Rh3CG338600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001250
Physical Location & Seq
Forward (+)
37848917 .. 37850304
1388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG338600.1

Sequence Viewer

Length: 735 bp
ATGTCTTTCGCTTACAACAGTGAATCCTCCGCACCTAAAAATGCAGACACTCTTGCCTATCTTCAAAGTAGTAACACTCAAAGTAGTCAGGATCTGCATGTCCTACTACTTGAAGGAATGAAAAAAATAGTTTCTGTTGCAACATCAAAACTAAAACAAATGCAAGGAAAACCAATTCCAGCTCTACCCCTCTCAATCAAACGCGAAGAAGAGGACGAGGTCATCCCCATAAGTAGTGAGAAGGATTTAGAGACACTACTCAACTATAAGCCACCAAAGGCTGCGACGCTGCTCATGGGAGAAATTGAGGTCTCTTTTCATTTACCCGAAGATCTAGCACTGCATGAGTTAGATCTTGAGAAGTTGCAGCCCTTGGAAAGTACAAGTACCAATACTCCGAGCAGTCGACAATTTACCATCTCAGAGAGGCTTGCTGGATGGAAGATCGAACGCTATATAAGAATTAAAAACCCGAAGCAGCATGACATGTATTTTCGTCACCATCAATCAAGGGCGAAGTTTCGATCAGTGGTAGAGGTGGCAAATTTTATACTTTACGAGGTATGTTTAACTGACATTATTATTGCTGCTCTGATAAATATGGCAAATTTTATACTATATGAGATTACCCTTCTTAGTAATCTTAGTTTTCTCATCTTCAGAAGTATTGAAACGCATTATGAGGAATGTCAGATAAGAATACGCGGAATTAGCAGGACTATCTGGTCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook

Protein Analysis

244

Amino Acids

27.94

Weight (kDa)

6.19

Isoelectric Point (pI)

55.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 724
AccI GTMKAC 1 cut(s) 406
AccII CGCG 2 cut(s) 204, 705
AciI CCGC 2 cut(s) 30, 705
AclWI GGATC 1 cut(s) 99
AcsI RAATTY 2 cut(s) 544, 607
AcuI CTGAAG 1 cut(s) 643
AfaI GTAC 2 cut(s) 382, 388
AflIII ACRYGT 1 cut(s) 486
AgsI TTSAA 3 cut(s) 65, 113, 671
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw26I GTCTC 2 cut(s) 245, 316
AlwI GGATC 1 cut(s) 99
AlwNI CAGNNNCTG 1 cut(s) 94
ApeKI GCWGC 5 cut(s) 281, 289, 367, 478, 587
ApoI RAATTY 2 cut(s) 544, 607
AsuHPI GGTGA 1 cut(s) 491
BbvI GCAGC 5 cut(s) 268, 276, 379, 490, 574
BccI CCATC 3 cut(s) 425, 432, 510
BcoDI GTCTC 2 cut(s) 245, 316
BfaI CTAG 1 cut(s) 335
BglII AGATCT 2 cut(s) 331, 352
BisI GCNGC 5 cut(s) 282, 290, 368, 479, 588
BlsI GCNGC 5 cut(s) 283, 291, 369, 480, 589
BpuEI CTTGAG 1 cut(s) 377
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 379, 409
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 2 cut(s) 222, 443
BseMII CTCAG 1 cut(s) 435
BseXI GCAGC 5 cut(s) 268, 276, 379, 490, 574
Bsh1236I CGCG 2 cut(s) 204, 705
BsmAI GTCTC 2 cut(s) 245, 316
Bso31I GGTCTC 1 cut(s) 316
Bsp143I GATC 5 cut(s) 91, 331, 352, 444, 524
BspACI CCGC 2 cut(s) 30, 705
BspCNI CTCAG 1 cut(s) 434
BspFNI CGCG 2 cut(s) 204, 705
BspPI GGATC 1 cut(s) 99
BspTNI GGTCTC 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 5 cut(s) 91, 331, 352, 444, 524
BssT1I CCWWGG 1 cut(s) 372
Bst4CI ACNGT 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 3 cut(s) 421, 635, 644
BstF5I GGATG 2 cut(s) 222, 443
BstFNI CGCG 2 cut(s) 204, 705
BstKTI GATC 5 cut(s) 94, 334, 355, 447, 527
BstMAI GTCTC 2 cut(s) 245, 316
BstMBI GATC 5 cut(s) 91, 331, 352, 444, 524
BstMWI GCNNNNNNNGC 1 cut(s) 711
BstNSI RCATGY 2 cut(s) 101, 490
BstUI CGCG 2 cut(s) 204, 705
BstV1I GCAGC 5 cut(s) 268, 276, 379, 490, 574
BstX2I RGATCY 3 cut(s) 91, 331, 352
BstYI RGATCY 3 cut(s) 91, 331, 352
BtsCI GGATG 2 cut(s) 222, 443
BtsI GCAGTG 1 cut(s) 338
BtsIMutI CAGTG 3 cut(s) 25, 338, 534
Cac8I GCNNGC 1 cut(s) 432
CaiI CAGNNNCTG 1 cut(s) 94
CseI GACGC 1 cut(s) 295
Csp6I GTAC 2 cut(s) 381, 387
CviAII CATG 5 cut(s) 98, 295, 344, 482, 487
CviJI RGCY 5 cut(s) 182, 271, 281, 370, 430
CviKI_1 RGCY 5 cut(s) 182, 271, 281, 370, 430
CviQI GTAC 2 cut(s) 381, 387
DdeI CTNAG 3 cut(s) 421, 635, 644
DpnI GATC 5 cut(s) 93, 333, 354, 446, 526
DpnII GATC 5 cut(s) 91, 331, 352, 444, 524
DrdI GACNNNNNNGTC 1 cut(s) 724
DseDI GACNNNNNNGTC 1 cut(s) 724
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco130I CCWWGG 1 cut(s) 372
Eco31I GGTCTC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 643
EcoT14I CCWWGG 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 5 cut(s) 101, 298, 347, 485, 490
FatI CATG 5 cut(s) 97, 294, 343, 481, 486
FblI GTMKAC 1 cut(s) 406
Fnu4HI GCNGC 5 cut(s) 282, 290, 368, 479, 588
FokI GGATG 2 cut(s) 209, 450
Fsp4HI GCNGC 5 cut(s) 282, 290, 368, 479, 588
FspBI CTAG 1 cut(s) 335
GluI GCNGC 5 cut(s) 282, 290, 368, 479, 588
HgaI GACGC 1 cut(s) 295
Hin1II CATG 5 cut(s) 101, 298, 347, 485, 490
HincII GTYRAC 1 cut(s) 407
HindII GTYRAC 1 cut(s) 407
HinfI GANTC 1 cut(s) 23
HphI GGTGA 1 cut(s) 491
Hpy166II GTNNAC 1 cut(s) 407
Hpy188I TCNGA 5 cut(s) 399, 424, 594, 662, 693
Hpy188III TCNNGA 2 cut(s) 89, 356
Hpy8I GTNNAC 1 cut(s) 407
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 3 cut(s) 107, 235, 641
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4V TGCA 6 cut(s) 44, 97, 140, 163, 343, 367
HpyF10VI GCNNNNNNNGC 1 cut(s) 711
HpyF3I CTNAG 3 cut(s) 421, 635, 644
Hsp92II CATG 5 cut(s) 101, 298, 347, 485, 490
Kzo9I GATC 5 cut(s) 91, 331, 352, 444, 524
LpnPI CCDG 5 cut(s) 74, 192, 420, 700, 709
Lsp1109I GCAGC 5 cut(s) 268, 276, 379, 490, 574
MaeI CTAG 1 cut(s) 335
MaeIII GTNAC 2 cut(s) 71, 497
MalI GATC 5 cut(s) 93, 333, 354, 446, 526
MboI GATC 5 cut(s) 91, 331, 352, 444, 524
MboII GAAGA 6 cut(s) 53, 218, 221, 341, 454, 649
MflI RGATCY 3 cut(s) 91, 331, 352
MluCI AATT 7 cut(s) 174, 303, 410, 462, 544, 607, 708
MnlI CCTC 9 cut(s) 37, 200, 205, 211, 301, 420, 529, 553, 676
MseI TTAA 2 cut(s) 465, 569
MvnI CGCG 2 cut(s) 204, 705
MwoI GCNNNNNNNGC 1 cut(s) 711
NdeII GATC 5 cut(s) 91, 331, 352, 444, 524
NlaIII CATG 5 cut(s) 101, 298, 347, 485, 490
NmuCI GTSAC 1 cut(s) 497
NspI RCATGY 2 cut(s) 101, 490
PciI ACATGT 1 cut(s) 486
PfeI GAWTC 1 cut(s) 23
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 5 cut(s) 283, 291, 369, 480, 589
PscI ACATGT 1 cut(s) 486
PstNI CAGNNNCTG 1 cut(s) 94
PsuI RGATCY 3 cut(s) 91, 331, 352
PsyI GACNNNGTC 1 cut(s) 218
RsaI GTAC 2 cut(s) 382, 388
RsaNI GTAC 2 cut(s) 381, 387
SalI GTCGAC 1 cut(s) 405
SaqAI TTAA 2 cut(s) 465, 569
SatI GCNGC 5 cut(s) 282, 290, 368, 479, 588
Sau3AI GATC 5 cut(s) 91, 331, 352, 444, 524
SetI ASST 6 cut(s) 37, 184, 222, 312, 540, 564
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 7 cut(s) 174, 303, 410, 462, 544, 607, 708
SsiI CCGC 2 cut(s) 30, 705
SspMI CTAG 1 cut(s) 335
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 1 cut(s) 20
TaqI TCGA 3 cut(s) 406, 447, 523
TasI AATT 7 cut(s) 174, 303, 410, 462, 544, 607, 708
TatI WGTACW 1 cut(s) 380
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 2 cut(s) 465, 569
Tru9I TTAA 2 cut(s) 465, 569
TscAI CASTG 3 cut(s) 25, 345, 534
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 5 cut(s) 281, 289, 367, 478, 587
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 2 cut(s) 134, 308
TspRI CASTG 3 cut(s) 25, 345, 534
Tth111I GACNNNGTC 1 cut(s) 218
XapI RAATTY 2 cut(s) 544, 607
XceI RCATGY 2 cut(s) 101, 490
XmiI GTMKAC 1 cut(s) 406
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.