Rw0G002680

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00084
Physical Location & Seq
Forward (+)
13341 .. 16028
2688 bp
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UTR
Exon/CDS
Intron
Rw0G002680.1

Sequence Viewer

Length: 501 bp
ATGCACCTGTTTGGTTCATATGAGTTGCATTTGCAACTTCACCAAACGATAAAAAGATTGGTGGCGGTACGAAAACACAAAGTGAGACAAGCAAGAGTTATGATGTTTCCTGTCGGGGAAACTCCCTTTTCATTCCAACTTCCGGCAGATTTTCCTCTTCATCAGATTGACGTGGAAAAGTTACTGGTACAAGTGGGTTGTATCCGTAAATTTTCATTATTTGAAAGGCTCAAGGGATGGAATATCGAGGTTAGACAAAGACAAATTGGACGTGCCCTCGACTCGTATTTCTATCACGAGAAGTACAACAAAGTTTTGCGATCCGTTATAGAGGTGGTAGGTTTCATCCTCTATGAAGATCCAACGGCTGTGAAATCTGAAAAGAGAAAGGCAGCATCGACTTTACCAAAGGAAGAATCCAGTAACAAAAGAGTCAACGTGGAGATGAAACAAAGTGAGGATTTCAATATCCAAGATGGCAATGAATTAACTATATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

166

Amino Acids

19.51

Weight (kDa)

9.43

Isoelectric Point (pI)

63.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 65
AclWI GGATC 2 cut(s) 315, 353
AcsI RAATTY 1 cut(s) 209
AdeI CACNNNGTG 1 cut(s) 82
AfaI GTAC 3 cut(s) 69, 189, 305
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 2 cut(s) 224, 466
AjiI CACGTC 2 cut(s) 172, 272
Alw26I GTCTC 1 cut(s) 79
AlwI GGATC 2 cut(s) 315, 353
ApeKI GCWGC 1 cut(s) 392
ApoI RAATTY 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 32
BaeGI GKGCMC 1 cut(s) 277
BauI CACGAG 1 cut(s) 296
BbvI GCAGC 1 cut(s) 404
BccI CCATC 2 cut(s) 231, 470
BceAI ACGGC 1 cut(s) 381
BciVI GTATCC 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 79
BfuI GTATCC 1 cut(s) 212
BisI GCNGC 1 cut(s) 393
BlsI GCNGC 1 cut(s) 394
BmgBI CACGTC 2 cut(s) 172, 272
BmsI GCATC 1 cut(s) 404
BpuEI CTTGAG 1 cut(s) 215
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse1I ACTGG 2 cut(s) 189, 420
Bse3DI GCAATG 1 cut(s) 487
BseGI GGATG 2 cut(s) 242, 345
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMI GCAATG 1 cut(s) 487
BseNI ACTGG 2 cut(s) 189, 420
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 1 cut(s) 404
BsiSI CCGG 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 2 cut(s) 320, 358
BspACI CCGC 1 cut(s) 65
BspPI GGATC 2 cut(s) 315, 353
BsrDI GCAATG 1 cut(s) 487
BsrI ACTGG 2 cut(s) 189, 420
BssMI GATC 2 cut(s) 320, 358
BssSI CACGAG 1 cut(s) 296
Bst2BI CACGAG 1 cut(s) 296
Bst6I CTCTTC 1 cut(s) 162
BstF5I GGATG 2 cut(s) 242, 345
BstKTI GATC 2 cut(s) 323, 361
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 2 cut(s) 320, 358
BstSLI GKGCMC 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 404
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuI GTATCC 1 cut(s) 212
BtrI CACGTC 2 cut(s) 172, 272
BtsCI GGATG 2 cut(s) 242, 345
Csp6I GTAC 3 cut(s) 68, 188, 304
CviJI RGCY 2 cut(s) 229, 368
CviKI_1 RGCY 2 cut(s) 229, 368
CviQI GTAC 3 cut(s) 68, 188, 304
DpnI GATC 2 cut(s) 322, 360
DpnII GATC 2 cut(s) 320, 358
DraIII CACNNNGTG 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
FaiI YATR 7 cut(s) 19, 21, 101, 329, 354, 494, 496
FauNDI CATATG 1 cut(s) 19
Fnu4HI GCNGC 1 cut(s) 393
FokI GGATG 2 cut(s) 249, 332
Fsp4HI GCNGC 1 cut(s) 393
GluI GCNGC 1 cut(s) 393
HapII CCGG 1 cut(s) 143
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 3 cut(s) 281, 416, 432
HpaII CCGG 1 cut(s) 143
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 2 cut(s) 165, 379
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 1 cut(s) 436
HpyCH4IV ACGT 3 cut(s) 171, 271, 438
HpyCH4V TGCA 3 cut(s) 4, 28, 34
HpySE526I ACGT 3 cut(s) 171, 271, 438
Kzo9I GATC 2 cut(s) 320, 358
LpnPI CCDG 5 cut(s) 20, 123, 156, 170, 433
Lsp1109I GCAGC 1 cut(s) 404
LweI GCATC 1 cut(s) 404
MaeII ACGT 3 cut(s) 171, 271, 438
MaeIII GTNAC 2 cut(s) 180, 422
MalI GATC 2 cut(s) 322, 360
MboI GATC 2 cut(s) 320, 358
MboII GAAGA 3 cut(s) 149, 368, 425
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 3 cut(s) 209, 264, 485
MlyI GAGTC 2 cut(s) 275, 441
MmeI TCCRAC 2 cut(s) 160, 386
MnlI CCTC 6 cut(s) 165, 241, 287, 325, 359, 451
MseI TTAA 1 cut(s) 488
MspI CCGG 1 cut(s) 143
NdeI CATATG 1 cut(s) 19
NdeII GATC 2 cut(s) 320, 358
PfeI GAWTC 1 cut(s) 416
PkrI GCNGC 1 cut(s) 394
PleI GAGTC 2 cut(s) 275, 440
PpsI GAGTC 2 cut(s) 275, 440
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 3 cut(s) 69, 189, 305
RsaNI GTAC 3 cut(s) 68, 188, 304
SaqAI TTAA 1 cut(s) 488
SatI GCNGC 1 cut(s) 393
Sau3AI GATC 2 cut(s) 320, 358
SchI GAGTC 2 cut(s) 275, 441
SduI GDGCHC 1 cut(s) 277
SetI ASST 7 cut(s) 9, 174, 252, 274, 336, 343, 441
SfaNI GCATC 1 cut(s) 404
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 3 cut(s) 209, 264, 485
SsiI CCGC 1 cut(s) 65
TaiI ACGT 3 cut(s) 174, 274, 441
TaqI TCGA 3 cut(s) 246, 279, 398
TasI AATT 3 cut(s) 209, 264, 485
TatI WGTACW 1 cut(s) 303
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 1 cut(s) 488
Tru9I TTAA 1 cut(s) 488
TseI GCWGC 1 cut(s) 392
TspDTI ATGAA 8 cut(s) 6, 120, 149, 204, 334, 369, 461, 498
TspGWI ACGGA 2 cut(s) 194, 313
XapI RAATTY 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.