Rh3DG340600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001250
Physical Location & Seq
Forward (+)
38067806 .. 38082570
14765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG340600.1

Sequence Viewer

Length: 564 bp
ATGTCTTTCGCTTACAACAGTGAATCCTCCGCACCTAAAAATGCAGACACTCTTGCCTATCTTCAAAGTAGTAACACTCAAAGTAGTCAGGATCTGCATGTCCTACTACTTGAAGGAATGAAAAAAATAGTTTCTGTTGCAACATCAAAACTAAAACAAATGCAAGGAAAACCAATTCCAGCTCTACCCCTCTCAATCAAACGCGAAGAAGAGGACGAGGTCATCCCCATAAGTAGTGAGAAGGATTTAGAGACACTACTCAACTATAAGCCACCAAAGGCTGCGACGCTGCTCATGGGAGAAATTGAGGTCTCTTTTCATTTACCCGAAGATCTAGCACTGCATGAGTTAGATCTTGAGAAGTTGCAGCCCTTGGAAAGTACAAGTACCAATACTCCGAGCAGTCGACAATTTACCATCTCAGAGAGGCTTGCTGGATGGAAGATCGAACGCTATATAAGAATTAAAAACCCGAAGCAGCATGACATGTATTTTCGTCACCATCAATCAAGGGCGAAGTTTCGATCAGTGGTAGAGGTGGCAAATTTTATACTTTACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook

Protein Analysis

187

Amino Acids

21.33

Weight (kDa)

6.32

Isoelectric Point (pI)

56.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 406
AccII CGCG 1 cut(s) 204
AciI CCGC 1 cut(s) 30
AclWI GGATC 1 cut(s) 99
AcsI RAATTY 1 cut(s) 544
AfaI GTAC 2 cut(s) 382, 388
AflIII ACRYGT 1 cut(s) 486
AgsI TTSAA 2 cut(s) 65, 113
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw26I GTCTC 2 cut(s) 245, 316
AlwI GGATC 1 cut(s) 99
AlwNI CAGNNNCTG 1 cut(s) 94
ApeKI GCWGC 4 cut(s) 281, 289, 367, 478
ApoI RAATTY 1 cut(s) 544
AsuHPI GGTGA 1 cut(s) 491
BbvI GCAGC 4 cut(s) 268, 276, 379, 490
BccI CCATC 3 cut(s) 425, 432, 510
BcoDI GTCTC 2 cut(s) 245, 316
BfaI CTAG 1 cut(s) 335
BglII AGATCT 2 cut(s) 331, 352
BisI GCNGC 4 cut(s) 282, 290, 368, 479
BlsI GCNGC 4 cut(s) 283, 291, 369, 480
BpuEI CTTGAG 1 cut(s) 377
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 379, 409
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 2 cut(s) 222, 443
BseMII CTCAG 1 cut(s) 435
BseXI GCAGC 4 cut(s) 268, 276, 379, 490
Bsh1236I CGCG 1 cut(s) 204
BsmAI GTCTC 2 cut(s) 245, 316
Bso31I GGTCTC 1 cut(s) 316
Bsp143I GATC 5 cut(s) 91, 331, 352, 444, 524
BspACI CCGC 1 cut(s) 30
BspCNI CTCAG 1 cut(s) 434
BspFNI CGCG 1 cut(s) 204
BspPI GGATC 1 cut(s) 99
BspTNI GGTCTC 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 5 cut(s) 91, 331, 352, 444, 524
BssT1I CCWWGG 1 cut(s) 372
Bst4CI ACNGT 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 1 cut(s) 421
BstF5I GGATG 2 cut(s) 222, 443
BstFNI CGCG 1 cut(s) 204
BstKTI GATC 5 cut(s) 94, 334, 355, 447, 527
BstMAI GTCTC 2 cut(s) 245, 316
BstMBI GATC 5 cut(s) 91, 331, 352, 444, 524
BstNSI RCATGY 2 cut(s) 101, 490
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 4 cut(s) 268, 276, 379, 490
BstX2I RGATCY 3 cut(s) 91, 331, 352
BstYI RGATCY 3 cut(s) 91, 331, 352
BtsCI GGATG 2 cut(s) 222, 443
BtsI GCAGTG 1 cut(s) 338
BtsIMutI CAGTG 3 cut(s) 25, 338, 534
Cac8I GCNNGC 1 cut(s) 432
CaiI CAGNNNCTG 1 cut(s) 94
CseI GACGC 1 cut(s) 295
Csp6I GTAC 2 cut(s) 381, 387
CviAII CATG 5 cut(s) 98, 295, 344, 482, 487
CviJI RGCY 5 cut(s) 182, 271, 281, 370, 430
CviKI_1 RGCY 5 cut(s) 182, 271, 281, 370, 430
CviQI GTAC 2 cut(s) 381, 387
DdeI CTNAG 1 cut(s) 421
DpnI GATC 5 cut(s) 93, 333, 354, 446, 526
DpnII GATC 5 cut(s) 91, 331, 352, 444, 524
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco130I CCWWGG 1 cut(s) 372
Eco31I GGTCTC 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 5 cut(s) 101, 298, 347, 485, 490
FatI CATG 5 cut(s) 97, 294, 343, 481, 486
FblI GTMKAC 1 cut(s) 406
Fnu4HI GCNGC 4 cut(s) 282, 290, 368, 479
FokI GGATG 2 cut(s) 209, 450
Fsp4HI GCNGC 4 cut(s) 282, 290, 368, 479
FspBI CTAG 1 cut(s) 335
GluI GCNGC 4 cut(s) 282, 290, 368, 479
HgaI GACGC 1 cut(s) 295
Hin1II CATG 5 cut(s) 101, 298, 347, 485, 490
HincII GTYRAC 1 cut(s) 407
HindII GTYRAC 1 cut(s) 407
HinfI GANTC 1 cut(s) 23
HphI GGTGA 1 cut(s) 491
Hpy166II GTNNAC 1 cut(s) 407
Hpy188I TCNGA 2 cut(s) 399, 424
Hpy188III TCNNGA 2 cut(s) 89, 356
Hpy8I GTNNAC 1 cut(s) 407
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 2 cut(s) 107, 235
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4V TGCA 6 cut(s) 44, 97, 140, 163, 343, 367
HpyF3I CTNAG 1 cut(s) 421
Hsp92II CATG 5 cut(s) 101, 298, 347, 485, 490
Kzo9I GATC 5 cut(s) 91, 331, 352, 444, 524
LpnPI CCDG 3 cut(s) 74, 192, 420
Lsp1109I GCAGC 4 cut(s) 268, 276, 379, 490
MaeI CTAG 1 cut(s) 335
MaeIII GTNAC 2 cut(s) 71, 497
MalI GATC 5 cut(s) 93, 333, 354, 446, 526
MboI GATC 5 cut(s) 91, 331, 352, 444, 524
MboII GAAGA 5 cut(s) 53, 218, 221, 341, 454
MflI RGATCY 3 cut(s) 91, 331, 352
MluCI AATT 5 cut(s) 174, 303, 410, 462, 544
MnlI CCTC 7 cut(s) 37, 200, 205, 211, 301, 420, 529
MseI TTAA 1 cut(s) 465
MvnI CGCG 1 cut(s) 204
NdeII GATC 5 cut(s) 91, 331, 352, 444, 524
NlaIII CATG 5 cut(s) 101, 298, 347, 485, 490
NmuCI GTSAC 1 cut(s) 497
NspI RCATGY 2 cut(s) 101, 490
PciI ACATGT 1 cut(s) 486
PfeI GAWTC 1 cut(s) 23
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 4 cut(s) 283, 291, 369, 480
PscI ACATGT 1 cut(s) 486
PstNI CAGNNNCTG 1 cut(s) 94
PsuI RGATCY 3 cut(s) 91, 331, 352
PsyI GACNNNGTC 1 cut(s) 218
RsaI GTAC 2 cut(s) 382, 388
RsaNI GTAC 2 cut(s) 381, 387
SalI GTCGAC 1 cut(s) 405
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 4 cut(s) 282, 290, 368, 479
Sau3AI GATC 5 cut(s) 91, 331, 352, 444, 524
SetI ASST 5 cut(s) 37, 184, 222, 312, 540
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 5 cut(s) 174, 303, 410, 462, 544
SsiI CCGC 1 cut(s) 30
SspMI CTAG 1 cut(s) 335
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 1 cut(s) 20
TaqI TCGA 3 cut(s) 406, 447, 523
TasI AATT 5 cut(s) 174, 303, 410, 462, 544
TatI WGTACW 1 cut(s) 380
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 3 cut(s) 25, 345, 534
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 4 cut(s) 281, 289, 367, 478
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 2 cut(s) 134, 308
TspRI CASTG 3 cut(s) 25, 345, 534
Tth111I GACNNNGTC 1 cut(s) 218
XapI RAATTY 1 cut(s) 544
XceI RCATGY 2 cut(s) 101, 490
XmiI GTMKAC 1 cut(s) 406
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.