Rmu_sc0038645.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038645.1
OG0001250
Physical Location & Seq
Forward (+)
732 .. 1504
773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038645.1_g000001.1.cds

Sequence Viewer

Length: 525 bp
atggtatcacccagatcctccacttcagcatggttgtccccatcatcgactagtagcacttcacttgcatcctcggctacaactgcaccggttcccttaccacccaagtttgacacggtactatcgtcatcgccatgtcagccggtagtgtcaccaccaccccaatctgtagcaccggtttcacagaagccgttcgatttagatcaggtcatgggcaactttccacgggcgcaaatagtggactaccatgagacacaaagacgccaagtggtctctccatctccttcttcaaaggaattggttctttataagccggagacacagcgacaagaaaatctacaggaacgacttgggcaagtcatcaaggatcttgttcatgtaacaatgtttgccctagaaaccccggaagaggcgtctgagtcaacgaaggaagacaataaactgatgatagtagcggtagaggaggctcaggctgaccatgagagccctaaaataacgaacacggtgattttttattcttcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.02

Weight (kDa)

5.04

Isoelectric Point (pI)

74.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
AciI CCGC 1 cut(s) 455
AclWI GGATC 2 cut(s) 9, 375
AcuI CTGAAG 1 cut(s) 9
AcyI GRCGYC 2 cut(s) 262, 413
AfaI GTAC 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 409
AgeI ACCGGT 2 cut(s) 88, 175
AgsI TTSAA 1 cut(s) 291
AhlI ACTAGT 1 cut(s) 50
Alw26I GTCTC 3 cut(s) 245, 277, 311
AlwI GGATC 2 cut(s) 9, 375
AsiGI ACCGGT 2 cut(s) 88, 175
Asp700I GAANNNNTTC 2 cut(s) 191, 300
AspLEI GCGC 1 cut(s) 232
AsuC2I CCSGG 1 cut(s) 404
AsuHPI GGTGA 2 cut(s) 144, 517
BaeI ACNNNNGTAYC 2 cut(s) 110, 143
BanII GRGCYC 1 cut(s) 488
BbsI GAAGAC 1 cut(s) 438
BccI CCATC 2 cut(s) 49, 286
BceAI ACGGC 1 cut(s) 175
BcnI CCSGG 1 cut(s) 404
BcoDI GTCTC 3 cut(s) 245, 277, 311
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 2 cut(s) 51, 395
BfmI CTRYAG 2 cut(s) 168, 338
Bme1390I CCNGG 1 cut(s) 404
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 404
BmsI GCATC 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 438
Bpu10I CCTNAGC 1 cut(s) 468
BpuMI CCSGG 1 cut(s) 404
BsaBI GATNNNNATC 1 cut(s) 201
BsaHI GRCGYC 2 cut(s) 262, 413
BsaI GGTCTC 1 cut(s) 277
BsaJI CCNNGG 3 cut(s) 72, 224, 402
BsaWI WCCGGW 2 cut(s) 88, 175
Bsc4I CCNNNNNNNGG 1 cut(s) 409
Bse118I RCCGGY 3 cut(s) 88, 142, 175
Bse8I GATNNNNATC 1 cut(s) 201
BseDI CCNNGG 3 cut(s) 72, 224, 402
BseGI GGATG 1 cut(s) 68
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 409
BseMII CTCAG 2 cut(s) 408, 482
BseRI GAGGAG 1 cut(s) 476
BsgI GTGCAG 1 cut(s) 69
BshTI ACCGGT 2 cut(s) 88, 175
BsiSI CCGG 5 cut(s) 89, 143, 176, 314, 404
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 409
BsmAI GTCTC 3 cut(s) 245, 277, 311
BsmFI GGGAC 1 cut(s) 22
Bso31I GGTCTC 1 cut(s) 277
Bsp1286I GDGCHC 1 cut(s) 488
Bsp143I GATC 3 cut(s) 14, 202, 367
BspACI CCGC 1 cut(s) 455
BspCNI CTCAG 2 cut(s) 409, 481
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 2 cut(s) 9, 375
BspTNI GGTCTC 1 cut(s) 277
BsrFI RCCGGY 3 cut(s) 88, 142, 175
BssAI RCCGGY 3 cut(s) 88, 142, 175
BssECI CCNNGG 3 cut(s) 72, 224, 402
BssMI GATC 3 cut(s) 14, 202, 367
BssNI GRCGYC 2 cut(s) 262, 413
Bst4CI ACNGT 2 cut(s) 118, 505
Bst6I CTCTTC 1 cut(s) 402
BstACI GRCGYC 2 cut(s) 262, 413
BstDEI CTNAG 2 cut(s) 417, 468
BstDSI CCRYGG 1 cut(s) 224
BstF5I GGATG 1 cut(s) 68
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 3 cut(s) 17, 205, 370
BstMAI GTCTC 3 cut(s) 245, 277, 311
BstMBI GATC 3 cut(s) 14, 202, 367
BstMWI GCNNNNNNNGC 3 cut(s) 74, 83, 139
BstSCI CCNGG 1 cut(s) 402
BstSFI CTRYAG 2 cut(s) 168, 338
BstV2I GAAGAC 1 cut(s) 438
BstX2I RGATCY 2 cut(s) 14, 367
BstYI RGATCY 2 cut(s) 14, 367
BtgI CCRYGG 1 cut(s) 224
BtgZI GCGATG 1 cut(s) 114
BtsCI GGATG 1 cut(s) 68
CfoI GCGC 1 cut(s) 232
Cfr10I RCCGGY 3 cut(s) 88, 142, 175
CseI GACGC 2 cut(s) 270, 402
Csp6I GTAC 1 cut(s) 119
CspAI ACCGGT 2 cut(s) 88, 175
CviAII CATG 6 cut(s) 30, 135, 211, 248, 377, 479
CviJI RGCY 7 cut(s) 77, 142, 190, 313, 467, 473, 486
CviKI_1 RGCY 7 cut(s) 77, 142, 190, 313, 467, 473, 486
CviQI GTAC 1 cut(s) 119
DdeI CTNAG 2 cut(s) 417, 468
DpnI GATC 3 cut(s) 16, 204, 369
DpnII GATC 3 cut(s) 14, 202, 367
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 488
Eco31I GGTCTC 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 488
FaeI CATG 6 cut(s) 33, 138, 214, 251, 380, 482
FaiI YATR 8 cut(s) 31, 136, 212, 249, 309, 378, 480, 523
FaqI GGGAC 1 cut(s) 22
FatI CATG 6 cut(s) 29, 134, 210, 247, 376, 478
FokI GGATG 1 cut(s) 55
FriOI GRGCYC 1 cut(s) 488
FspBI CTAG 2 cut(s) 51, 395
GlaI GCGC 1 cut(s) 231
HapII CCGG 5 cut(s) 89, 143, 176, 314, 404
HgaI GACGC 2 cut(s) 270, 402
HhaI GCGC 1 cut(s) 232
Hin1I GRCGYC 2 cut(s) 262, 413
Hin1II CATG 6 cut(s) 33, 138, 214, 251, 380, 482
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HincII GTYRAC 1 cut(s) 423
HindII GTYRAC 1 cut(s) 423
HinfI GANTC 1 cut(s) 419
HpaII CCGG 5 cut(s) 89, 143, 176, 314, 404
HphI GGTGA 2 cut(s) 144, 517
Hpy166II GTNNAC 2 cut(s) 241, 423
Hpy188I TCNGA 1 cut(s) 418
Hpy8I GTNNAC 2 cut(s) 241, 423
HpyAV CCTTC 2 cut(s) 294, 421
HpyCH4III ACNGT 2 cut(s) 118, 505
HpyCH4V TGCA 2 cut(s) 68, 86
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 83, 139
HpyF3I CTNAG 2 cut(s) 417, 468
Hsp92I GRCGYC 2 cut(s) 262, 413
Hsp92II CATG 6 cut(s) 33, 138, 214, 251, 380, 482
HspAI GCGC 1 cut(s) 230
Kzo9I GATC 3 cut(s) 14, 202, 367
LpnPI CCDG 9 cut(s) 25, 102, 156, 189, 191, 326, 327, 417, 455
LweI GCATC 1 cut(s) 77
MaeI CTAG 2 cut(s) 51, 395
MaeIII GTNAC 2 cut(s) 150, 379
MalI GATC 3 cut(s) 16, 204, 369
MboI GATC 3 cut(s) 14, 202, 367
MboII GAAGA 4 cut(s) 279, 419, 443, 510
MflI RGATCY 2 cut(s) 14, 367
MhlI GDGCHC 1 cut(s) 488
MluCI AATT 1 cut(s) 296
MlyI GAGTC 1 cut(s) 428
MnlI CCTC 5 cut(s) 28, 82, 403, 454, 457
MroXI GAANNNNTTC 2 cut(s) 191, 300
MslI CAYNNNNRTG 1 cut(s) 133
MspI CCGG 5 cut(s) 89, 143, 176, 314, 404
MspR9I CCNGG 1 cut(s) 404
MwoI GCNNNNNNNGC 3 cut(s) 74, 83, 139
NciI CCSGG 1 cut(s) 404
NdeII GATC 3 cut(s) 14, 202, 367
NlaIII CATG 6 cut(s) 33, 138, 214, 251, 380, 482
NlaIV GGNNCC 1 cut(s) 93
NmeAIII GCCGAG 1 cut(s) 53
NmuCI GTSAC 1 cut(s) 150
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PdmI GAANNNNTTC 2 cut(s) 191, 300
PinAI ACCGGT 2 cut(s) 88, 175
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
PsiI TTATAA 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 93
PsuI RGATCY 2 cut(s) 14, 367
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 133
Sau3AI GATC 3 cut(s) 14, 202, 367
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 1 cut(s) 404
SduI GDGCHC 1 cut(s) 488
SetI ASST 1 cut(s) 210
SfaNI GCATC 1 cut(s) 77
SfcI CTRYAG 2 cut(s) 168, 338
SmiMI CAYNNNNRTG 1 cut(s) 133
SpeI ACTAGT 1 cut(s) 50
Sse9I AATT 1 cut(s) 296
SsiI CCGC 1 cut(s) 455
SspMI CTAG 2 cut(s) 51, 395
StyD4I CCNGG 1 cut(s) 402
TaaI ACNGT 2 cut(s) 118, 505
TaqI TCGA 2 cut(s) 47, 195
TasI AATT 1 cut(s) 296
TseFI GTSAC 1 cut(s) 150
Tsp45I GTSAC 1 cut(s) 150
TspDTI ATGAA 2 cut(s) 365, 510
XmnI GAANNNNTTC 2 cut(s) 191, 300
XspI CTAG 2 cut(s) 51, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.