RLG00000009923

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001250
Physical Location & Seq
Forward (+)
60206786 .. 60211594
4809 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009923

Sequence Viewer

Length: 1266 bp
ATGGCATCACCCAGATCCTCCACTTCAGCATGGTTGTCGCCATCATCGACTAGTAGCACTTCACTTGCATCCTCGGCTACAACTGCACCGGTTCCCTCACCACCCAAGTTTGACAAGGTACTGTCGTCATCCCCATGTCAGCCGGCAGTGTCACCACCACTCCAATCTGTAACACCAGTTTCACAGACGCCGTTCGATTTAGATCAGGTCATGGGCAACTTTCCACGGGCGCAAATAGTGGACTACCATGAGACACAAAGACGCCAAGTGGTCTCTCCATCTCCTTCTTCAAAGGAATTGGTTCTTTATAAGCCGGAGACACAGCGACAAGAAAATCTACAGGAACGACTTGGGCAAGTCATCAAGGATCTTGTTCATAAAGAGGTGACCGAGTTGATGAAACAAGCAGAGGCGGAGACAGCGAAGGAACGGAAGACTGAGCATTACAGTGGCAGAAGTAGCATGGAAGAAGCGTCTGAGTCAACGAAGGAAGACAATAAACTGATGATAGTAGCGGTAGAGGAGGCTCAGGCTGACCATGAGAGCCTTAAAATAACGACCACGGAACCGACCTTCACTACCAGGCCAGGCCGATCAGCCACCAAACTAATGGCCCATATTTCCAATGTGTCCTTTCAAATGCCTGATGATTTCGAAGTTGACGATGACACAATAAACGAGTTTGTGCCTAATGATGAAGTGCTCAGGGAAATTACTGCTCAAGGTAGGAAAAAATACAGTTTCTTTGACAGACTTCATGGATGGAAAATGGAGTGTAGATTAAGACTGAATGGCGTTCGACAATTCGATAAGTATTTCACACATGTTCAATCGAAGATTGTGACGAGATCAATTCCTGAAGTTGTGAGGTTTATCCTTTATGAGGTGAACCCTAAACAAATGAGGGAAGCCAACAGCAAACGTAAATCGATAGATTTTTGGCCAGCTAATGAGAGCCCTAAAAATATATTAATGGATGAATACCCAAGTATGTCATCTGAAGGCGCTGCTGGTGATTTTGAAGAAGACGAGGAGTCGTACGTGCAGATGTTTCTTCGCTTAGCCTGGAGTAACCTGATGAACGGCACTGCAGAGGAGGTGCCATTGTTAAGTGAATGGGAAAAATTCATGGCTGCGAAAAAGAAGGCCCGAACTACACCTTGCAAACCAGAGGTTGGTACATCCAACTTGGATGCTGAAGCTGTAGAGACAGCAAACGCCTTGATGGGACTAGCTGACGATGAAATGACTGATGAAGGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook

Protein Analysis

422

Amino Acids

47.35

Weight (kDa)

5.05

Isoelectric Point (pI)

59.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
AccB1I GGYRCC 1 cut(s) 1099
AccB7I CCANNNNNTGG 1 cut(s) 1175
AciI CCGC 2 cut(s) 413, 515
AclWI GGATC 2 cut(s) 9, 375
AcoI YGGCCR 1 cut(s) 941
AcsI RAATTY 1 cut(s) 1124
AcuI CTGAAG 4 cut(s) 9, 879, 1020, 1218
AcyI GRCGYC 2 cut(s) 188, 262
AfaI GTAC 3 cut(s) 120, 1040, 1180
AfiI CCNNNNNNNGG 2 cut(s) 883, 1175
AflIII ACRYGT 1 cut(s) 823
AgeI ACCGGT 1 cut(s) 88
AgsI TTSAA 4 cut(s) 291, 638, 830, 1022
AhdI GACNNNNNGTC 1 cut(s) 1033
AhlI ACTAGT 1 cut(s) 50
AjnI CCWGG 3 cut(s) 581, 586, 1064
AluBI AGCT 3 cut(s) 947, 1202, 1235
AluI AGCT 3 cut(s) 947, 1202, 1235
Alw21I GWGCWC 1 cut(s) 705
Alw26I GTCTC 5 cut(s) 245, 277, 311, 410, 1202
AlwI GGATC 2 cut(s) 9, 375
AoxI GGCC 5 cut(s) 584, 589, 612, 941, 1146
ApeKI GCWGC 2 cut(s) 1007, 1133
ApoI RAATTY 1 cut(s) 1124
AseI ATTAAT 1 cut(s) 971
AsiGI ACCGGT 1 cut(s) 88
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 2 cut(s) 232, 1007
AspS9I GGNCC 2 cut(s) 613, 1147
AsuHPI GGTGA 5 cut(s) 90, 144, 397, 898, 1025
AsuII TTCGAA 1 cut(s) 654
BaeI ACNNNNGTAYC 2 cut(s) 110, 143
BalI TGGCCA 1 cut(s) 943
BanI GGYRCC 1 cut(s) 1099
BanII GRGCYC 1 cut(s) 959
BbsI GAAGAC 3 cut(s) 440, 498, 1032
Bbv12I GWGCWC 1 cut(s) 705
BbvI GCAGC 2 cut(s) 994, 1120
BccI CCATC 4 cut(s) 49, 286, 756, 1219
BceAI ACGGC 2 cut(s) 175, 1099
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BciT130I CCWGG 3 cut(s) 583, 588, 1066
BcoDI GTCTC 5 cut(s) 245, 277, 311, 410, 1202
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 2 cut(s) 51, 1232
BfmI CTRYAG 3 cut(s) 338, 1089, 1203
BfoI RGCGCY 1 cut(s) 1008
BisI GCNGC 2 cut(s) 1008, 1134
BlpI GCTNAGC 1 cut(s) 1060
BlsI GCNGC 2 cut(s) 1009, 1135
Bme1390I CCNGG 3 cut(s) 583, 588, 1066
BmeRI GACNNNNNGTC 1 cut(s) 1033
BmgT120I GGNCC 2 cut(s) 613, 1147
BmiI GGNNCC 3 cut(s) 93, 567, 1101
BmrFI CCNGG 3 cut(s) 583, 588, 1066
BmsI GCATC 3 cut(s) 14, 77, 1183
BpiI GAAGAC 3 cut(s) 440, 498, 1032
BpmI CTGGAG 1 cut(s) 1087
Bpu10I CCTNAGC 2 cut(s) 528, 704
Bpu1102I GCTNAGC 1 cut(s) 1060
Bpu14I TTCGAA 1 cut(s) 654
BpuEI CTTGAG 1 cut(s) 705
Bsa29I ATCGAT 1 cut(s) 929
BsaAI YACGTR 1 cut(s) 1042
BsaBI GATNNNNATC 1 cut(s) 201
BsaHI GRCGYC 2 cut(s) 188, 262
BsaI GGTCTC 1 cut(s) 277
BsaJI CCNNGG 3 cut(s) 72, 224, 561
BsaWI WCCGGW 1 cut(s) 88
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bsc4I CCNNNNNNNGG 2 cut(s) 883, 1175
Bse118I RCCGGY 2 cut(s) 88, 142
Bse1I ACTGG 1 cut(s) 176
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 3 cut(s) 583, 588, 1066
BseCI ATCGAT 1 cut(s) 929
BseDI CCNNGG 3 cut(s) 72, 224, 561
BseGI GGATG 6 cut(s) 68, 128, 767, 982, 1181, 1198
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 2 cut(s) 883, 1175
BseMII CTCAG 4 cut(s) 429, 468, 542, 718
BseNI ACTGG 1 cut(s) 176
BseRI GAGGAG 3 cut(s) 536, 1046, 1109
BseXI GCAGC 2 cut(s) 994, 1120
BsgI GTGCAG 2 cut(s) 69, 1064
BshFI GGCC 5 cut(s) 586, 591, 614, 943, 1148
BshNI GGYRCC 1 cut(s) 1099
BshTI ACCGGT 1 cut(s) 88
BshVI ATCGAT 1 cut(s) 929
BsiHKAI GWGCWC 1 cut(s) 705
BsiSI CCGG 3 cut(s) 89, 143, 314
BsiWI CGTACG 1 cut(s) 1038
BslFI GGGAC 1 cut(s) 1242
BslI CCNNNNNNNGG 2 cut(s) 883, 1175
BsmAI GTCTC 5 cut(s) 245, 277, 311, 410, 1202
BsmFI GGGAC 1 cut(s) 1242
BsnI GGCC 5 cut(s) 586, 591, 614, 943, 1148
Bso31I GGTCTC 1 cut(s) 277
Bsp119I TTCGAA 1 cut(s) 654
Bsp1286I GDGCHC 2 cut(s) 705, 959
Bsp143I GATC 5 cut(s) 14, 202, 367, 593, 848
Bsp1720I GCTNAGC 1 cut(s) 1060
BspACI CCGC 2 cut(s) 413, 515
BspANI GGCC 5 cut(s) 586, 591, 614, 943, 1148
BspCNI CTCAG 4 cut(s) 430, 469, 541, 717
BspDI ATCGAT 1 cut(s) 929
BspLI GGNNCC 3 cut(s) 93, 567, 1101
BspMAI CTGCAG 1 cut(s) 1093
BspPI GGATC 2 cut(s) 9, 375
BspT104I TTCGAA 1 cut(s) 654
BspT107I GGYRCC 1 cut(s) 1099
BspTNI GGTCTC 1 cut(s) 277
BsrFI RCCGGY 2 cut(s) 88, 142
BsrI ACTGG 1 cut(s) 176
BssAI RCCGGY 2 cut(s) 88, 142
BssECI CCNNGG 3 cut(s) 72, 224, 561
BssMI GATC 5 cut(s) 14, 202, 367, 593, 848
BssNI GRCGYC 2 cut(s) 188, 262
Bst2UI CCWGG 3 cut(s) 583, 588, 1066
Bst4CI ACNGT 3 cut(s) 123, 449, 740
BstACI GRCGYC 2 cut(s) 188, 262
BstBAI YACGTR 1 cut(s) 1042
BstBI TTCGAA 1 cut(s) 654
BstC8I GCNNGC 2 cut(s) 144, 945
BstDEI CTNAG 5 cut(s) 438, 477, 528, 704, 1060
BstDSI CCRYGG 2 cut(s) 224, 561
BstEII GGTNACC 1 cut(s) 385
BstENI CCTNNNNNAGG 1 cut(s) 881
BstF5I GGATG 6 cut(s) 68, 128, 767, 982, 1181, 1198
BstH2I RGCGCY 1 cut(s) 1008
BstHHI GCGC 2 cut(s) 232, 1007
BstKTI GATC 5 cut(s) 17, 205, 370, 596, 851
BstMAI GTCTC 5 cut(s) 245, 277, 311, 410, 1202
BstMBI GATC 5 cut(s) 14, 202, 367, 593, 848
BstMWI GCNNNNNNNGC 4 cut(s) 74, 83, 419, 459
BstNI CCWGG 3 cut(s) 583, 588, 1066
BstNSI RCATGY 1 cut(s) 827
BstPI GGTNACC 1 cut(s) 385
BstSCI CCNGG 3 cut(s) 581, 586, 1064
BstSFI CTRYAG 3 cut(s) 338, 1089, 1203
BstV1I GCAGC 2 cut(s) 994, 1120
BstV2I GAAGAC 3 cut(s) 440, 498, 1032
BstX2I RGATCY 2 cut(s) 14, 367
BstXI CCANNNNNNTGG 1 cut(s) 610
BstYI RGATCY 2 cut(s) 14, 367
Bsu15I ATCGAT 1 cut(s) 929
BsuRI GGCC 5 cut(s) 586, 591, 614, 943, 1148
BsuTUI ATCGAT 1 cut(s) 929
BtgI CCRYGG 2 cut(s) 224, 561
BtsCI GGATG 6 cut(s) 68, 128, 767, 982, 1181, 1198
BtsI GCAGTG 2 cut(s) 153, 1086
BtsIMutI CAGTG 3 cut(s) 153, 454, 1086
Cac8I GCNNGC 2 cut(s) 144, 945
CfoI GCGC 2 cut(s) 232, 1007
Cfr10I RCCGGY 2 cut(s) 88, 142
Cfr13I GGNCC 2 cut(s) 613, 1147
ClaI ATCGAT 1 cut(s) 929
CseI GACGC 3 cut(s) 196, 270, 462
Csp6I GTAC 3 cut(s) 119, 1039, 1179
CspAI ACCGGT 1 cut(s) 88
CviAII CATG 9 cut(s) 30, 135, 211, 248, 463, 539, 758, 824, 1129
CviQI GTAC 3 cut(s) 119, 1039, 1179
DdeI CTNAG 5 cut(s) 438, 477, 528, 704, 1060
DpnI GATC 5 cut(s) 16, 204, 369, 595, 850
DpnII GATC 5 cut(s) 14, 202, 367, 593, 848
DriI GACNNNNNGTC 1 cut(s) 1033
EaeI YGGCCR 1 cut(s) 941
Eam1105I GACNNNNNGTC 1 cut(s) 1033
EciI GGCGGA 1 cut(s) 428
Eco24I GRGCYC 1 cut(s) 959
Eco31I GGTCTC 1 cut(s) 277
Eco57I CTGAAG 4 cut(s) 9, 879, 1020, 1218
Eco91I GGTNACC 1 cut(s) 385
EcoNI CCTNNNNNAGG 1 cut(s) 881
EcoO65I GGTNACC 1 cut(s) 385
EcoRII CCWGG 3 cut(s) 581, 586, 1064
EcoT38I GRGCYC 1 cut(s) 959
FaeI CATG 9 cut(s) 33, 138, 214, 251, 466, 542, 761, 827, 1132
FaqI GGGAC 1 cut(s) 1242
FatI CATG 9 cut(s) 29, 134, 210, 247, 462, 538, 757, 823, 1128
Fnu4HI GCNGC 2 cut(s) 1008, 1134
FokI GGATG 6 cut(s) 55, 115, 774, 989, 1168, 1205
FriOI GRGCYC 1 cut(s) 959
Fsp4HI GCNGC 2 cut(s) 1008, 1134
FspBI CTAG 2 cut(s) 51, 1232
GlaI GCGC 2 cut(s) 231, 1006
GluI GCNGC 2 cut(s) 1008, 1134
GsuI CTGGAG 1 cut(s) 1087
HaeII RGCGCY 1 cut(s) 1008
HaeIII GGCC 5 cut(s) 586, 591, 614, 943, 1148
HapII CCGG 3 cut(s) 89, 143, 314
HgaI GACGC 3 cut(s) 196, 270, 462
HhaI GCGC 2 cut(s) 232, 1007
Hin1I GRCGYC 2 cut(s) 188, 262
Hin1II CATG 9 cut(s) 33, 138, 214, 251, 466, 542, 761, 827, 1132
Hin6I GCGC 2 cut(s) 230, 1005
HinP1I GCGC 2 cut(s) 230, 1005
HincII GTYRAC 2 cut(s) 483, 661
HindII GTYRAC 2 cut(s) 483, 661
HinfI GANTC 2 cut(s) 479, 1034
HpaII CCGG 3 cut(s) 89, 143, 314
HphI GGTGA 5 cut(s) 90, 144, 397, 898, 1025
Hpy166II GTNNAC 4 cut(s) 241, 483, 661, 889
Hpy188I TCNGA 2 cut(s) 478, 1000
Hpy188III TCNNGA 1 cut(s) 857
Hpy8I GTNNAC 4 cut(s) 241, 483, 661, 889
HpyAV CCTTC 7 cut(s) 294, 418, 481, 583, 995, 1138, 1250
HpyCH4III ACNGT 3 cut(s) 123, 449, 740
HpyCH4IV ACGT 2 cut(s) 922, 1041
HpyCH4V TGCA 5 cut(s) 68, 86, 1045, 1091, 1164
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 83, 419, 459
HpyF3I CTNAG 5 cut(s) 438, 477, 528, 704, 1060
HpySE526I ACGT 2 cut(s) 922, 1041
Hsp92I GRCGYC 2 cut(s) 188, 262
Hsp92II CATG 9 cut(s) 33, 138, 214, 251, 466, 542, 761, 827, 1132
HspAI GCGC 2 cut(s) 230, 1005
KroI GCCGGC 1 cut(s) 142
KroNI GCCGGC 1 cut(s) 144
Kzo9I GATC 5 cut(s) 14, 202, 367, 593, 848
Lsp1109I GCAGC 2 cut(s) 994, 1120
LweI GCATC 3 cut(s) 14, 77, 1183
MaeI CTAG 2 cut(s) 51, 1232
MaeII ACGT 2 cut(s) 922, 1041
MaeIII GTNAC 5 cut(s) 150, 169, 385, 841, 1070
MalI GATC 5 cut(s) 16, 204, 369, 595, 850
MboI GATC 5 cut(s) 14, 202, 367, 593, 848
MboII GAAGA 8 cut(s) 279, 445, 479, 503, 847, 1034, 1037, 1046
MflI RGATCY 2 cut(s) 14, 367
MhlI GDGCHC 2 cut(s) 705, 959
MlsI TGGCCA 1 cut(s) 943
MluCI AATT 5 cut(s) 296, 711, 803, 852, 1124
MluNI TGGCCA 1 cut(s) 943
MlyI GAGTC 2 cut(s) 488, 1043
MmeI TCCRAC 1 cut(s) 1209
Mox20I TGGCCA 1 cut(s) 943
MroNI GCCGGC 1 cut(s) 142
MroXI GAANNNNTTC 1 cut(s) 300
MscI TGGCCA 1 cut(s) 943
MseI TTAA 4 cut(s) 549, 782, 971, 1109
MslI CAYNNNNRTG 2 cut(s) 133, 447
Msp20I TGGCCA 1 cut(s) 943
MspI CCGG 3 cut(s) 89, 143, 314
MspR9I CCNGG 3 cut(s) 583, 588, 1066
MvaI CCWGG 3 cut(s) 583, 588, 1066
MwoI GCNNNNNNNGC 4 cut(s) 74, 83, 419, 459
NaeI GCCGGC 1 cut(s) 144
NdeII GATC 5 cut(s) 14, 202, 367, 593, 848
NgoMIV GCCGGC 1 cut(s) 142
NlaIII CATG 9 cut(s) 33, 138, 214, 251, 466, 542, 761, 827, 1132
NlaIV GGNNCC 3 cut(s) 93, 567, 1101
NmeAIII GCCGAG 1 cut(s) 53
NmuCI GTSAC 3 cut(s) 150, 385, 841
NspI RCATGY 1 cut(s) 827
NspV TTCGAA 1 cut(s) 654
PciI ACATGT 1 cut(s) 823
PcsI WCGNNNNNNNCGW 2 cut(s) 44, 660
PdiI GCCGGC 1 cut(s) 144
PdmI GAANNNNTTC 1 cut(s) 300
Pfl23II CGTACG 1 cut(s) 1038
PflMI CCANNNNNTGG 1 cut(s) 1175
PinAI ACCGGT 1 cut(s) 88
PkrI GCNGC 2 cut(s) 1009, 1135
PleI GAGTC 2 cut(s) 487, 1042
PpsI GAGTC 2 cut(s) 487, 1042
Ppu21I YACGTR 1 cut(s) 1042
PscI ACATGT 1 cut(s) 823
PshBI ATTAAT 1 cut(s) 971
PsiI TTATAA 1 cut(s) 309
Psp6I CCWGG 3 cut(s) 581, 586, 1064
PspEI GGTNACC 1 cut(s) 385
PspGI CCWGG 3 cut(s) 581, 586, 1064
PspLI CGTACG 1 cut(s) 1038
PspN4I GGNNCC 3 cut(s) 93, 567, 1101
PspPI GGNCC 2 cut(s) 613, 1147
PstI CTGCAG 1 cut(s) 1093
PsuI RGATCY 2 cut(s) 14, 367
RsaI GTAC 3 cut(s) 120, 1040, 1180
RsaNI GTAC 3 cut(s) 119, 1039, 1179
RseI CAYNNNNRTG 2 cut(s) 133, 447
SaqAI TTAA 4 cut(s) 549, 782, 971, 1109
SatI GCNGC 2 cut(s) 1008, 1134
Sau3AI GATC 5 cut(s) 14, 202, 367, 593, 848
Sau96I GGNCC 2 cut(s) 613, 1147
SchI GAGTC 2 cut(s) 488, 1043
ScrFI CCNGG 3 cut(s) 583, 588, 1066
SduI GDGCHC 2 cut(s) 705, 959
SfaNI GCATC 3 cut(s) 14, 77, 1183
SfcI CTRYAG 3 cut(s) 338, 1089, 1203
SfuI TTCGAA 1 cut(s) 654
SmiMI CAYNNNNRTG 2 cut(s) 133, 447
SmlI CTYRAG 1 cut(s) 720
SmoI CTYRAG 1 cut(s) 720
SpeI ACTAGT 1 cut(s) 50
Sse9I AATT 5 cut(s) 296, 711, 803, 852, 1124
SsiI CCGC 2 cut(s) 413, 515
SspMI CTAG 2 cut(s) 51, 1232
StyD4I CCNGG 3 cut(s) 581, 586, 1064
TaaI ACNGT 3 cut(s) 123, 449, 740
TaiI ACGT 2 cut(s) 925, 1044
TaqI TCGA 7 cut(s) 47, 195, 654, 799, 807, 833, 929
TaqII GACCGA 1 cut(s) 404
TasI AATT 5 cut(s) 296, 711, 803, 852, 1124
Tru1I TTAA 4 cut(s) 549, 782, 971, 1109
Tru9I TTAA 4 cut(s) 549, 782, 971, 1109
TscAI CASTG 3 cut(s) 153, 454, 1093
TseFI GTSAC 3 cut(s) 150, 385, 841
TseI GCWGC 2 cut(s) 1007, 1133
Tsp45I GTSAC 3 cut(s) 150, 385, 841
TspDTI ATGAA 8 cut(s) 365, 413, 711, 746, 993, 1094, 1117, 1257
TspGWI ACGGA 2 cut(s) 445, 578
TspRI CASTG 3 cut(s) 153, 454, 1093
Van91I CCANNNNNTGG 1 cut(s) 1175
VspI ATTAAT 1 cut(s) 971
XagI CCTNNNNNAGG 1 cut(s) 881
XapI RAATTY 1 cut(s) 1124
XceI RCATGY 1 cut(s) 827
XcmI CCANNNNNNNNNTGG 1 cut(s) 607
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 2 cut(s) 51, 1232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.