Rh4DG027700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001250
Physical Location & Seq
Reverse (-)
4936156 .. 4938768
2613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG027700.1

Sequence Viewer

Length: 1227 bp
ATGGCATCACCCAGATCCTCCACTTCAGCATGCTTGTCGCCATCATCGACTAGTAGCACTTCACTTGCATCCTCGGCTACAACTGCACCGGATCCCTTACCACCCAAGTTTGACACGGTACTGTCGTCATCGCCATGTCAGCCGGTAGTGTCACCACCACCCCAATCTGTAACACCAGTTTCACAGAAGCCGTTCGATTTAGATCAGGTCATGGGCAACTTTCCACGGGCGCAAATAGTGGACTACCATGAGACACAAAGACGCCAAGTGGTCTCTCCATCTCCTTCTTCAAAGGAATTGGTTCTTTATAAGCCGGAGACACAGCGACAAGAAAATCTACAGGAACGACTTGGGCAAGTCATCAAGGATCTTGTTCATAAAGAGGTGACCGAGTTGATGAAACAAGCAGAGGCGGAGATAGCGAAGGAACGAAAGGCTGAGCATTACAGTGGCAGAAGTAGCATGGAAGAGGCGTCTGAGTCAACAAGGGAAGACAATAAACTGATGATAGTAGCGGTAGAGGAGGCTCAGGCTGACCATGAGAGCCCTAAAATAACGAACACGGAACCGACCTTCACTACCAGGCCAGGCCGATCAGCCACCAAACTAATGGCCCATATTTCCAATGTGTCTTTCCAAATGCCTGATGATTTCGAAGTTGACGATGACGCAATAAACGAGTTTGTGCCTAATGATGAAGTGCTTAGGGAAATTACTGCTCAAGGTAGGAAAAAATATAGTTTCTTTGACAGACTCCATGGATGGAAAATGGAGTGTAGATTAAGACTGAATGGCGTTCGACAATTCGATAAGTATTTCACACATGTTCAATCGAAGATTGTGACGAGATCAATTCCTGAAGTTGTGAGGTTTATCCTTTATGAGGTGAGCCCTAAACAAATGAGGGAAGCCAACAGCAACCGTAAATCGATAGATTTTTGGGAGCCAGCTAATGAGAGCCCTAAAAATATATTAAAGGATGAATACCCAAGTATGTCATCTGAAGGCGCTGCTGGTGATTTTGAAGAAGAGGAGGAGTCGTACGTGCAGATGTTTCTTCGCGTAGCCTGGAGTAACCTGATGAACGGCACTGCAGCGGAGGTGCCATTGTTAAGTGAATGGGAAAAATTCAAGGCTGCAAAAAAGAAGGCCAGAACTACACCTTGCAAACCAGAGGTTGGTACATCCAACTTGGATGCTGAAGCTGTAGAGACAGAAGGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook

Protein Analysis

408

Amino Acids

45.87

Weight (kDa)

5.25

Isoelectric Point (pI)

61.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
AccB1I GGYRCC 1 cut(s) 1102
AccB7I CCANNNNNTGG 1 cut(s) 1178
AccII CGCG 1 cut(s) 1062
AciI CCGC 3 cut(s) 413, 515, 1097
AclWI GGATC 4 cut(s) 9, 86, 99, 375
AcsI RAATTY 1 cut(s) 1127
AcuI CTGAAG 4 cut(s) 9, 879, 1023, 1221
AcyI GRCGYC 2 cut(s) 262, 473
AfaI GTAC 3 cut(s) 120, 1043, 1183
AfiI CCNNNNNNNGG 2 cut(s) 883, 1178
AflIII ACRYGT 1 cut(s) 823
AgsI TTSAA 4 cut(s) 291, 830, 1025, 1132
AhlI ACTAGT 1 cut(s) 50
AjnI CCWGG 3 cut(s) 581, 586, 1067
AjuI GAANNNNNNNTTGG 2 cut(s) 617, 649
AluBI AGCT 2 cut(s) 950, 1205
AluI AGCT 2 cut(s) 950, 1205
Alw26I GTCTC 4 cut(s) 245, 277, 311, 1205
AlwI GGATC 4 cut(s) 9, 86, 99, 375
AoxI GGCC 4 cut(s) 584, 589, 612, 1149
ApeKI GCWGC 3 cut(s) 1010, 1094, 1136
ApoI RAATTY 1 cut(s) 1127
Asp700I GAANNNNTTC 2 cut(s) 191, 300
AspLEI GCGC 2 cut(s) 232, 1010
AspS9I GGNCC 1 cut(s) 613
AsuHPI GGTGA 4 cut(s) 144, 397, 898, 1028
AsuII TTCGAA 1 cut(s) 654
BaeI ACNNNNGTAYC 2 cut(s) 110, 143
BamHI GGATCC 1 cut(s) 91
BanI GGYRCC 1 cut(s) 1102
BanII GRGCYC 3 cut(s) 548, 893, 962
BbsI GAAGAC 1 cut(s) 498
BbvI GCAGC 3 cut(s) 997, 1106, 1123
BccI CCATC 3 cut(s) 49, 286, 756
BceAI ACGGC 2 cut(s) 175, 1102
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BciT130I CCWGG 3 cut(s) 583, 588, 1069
BcoDI GTCTC 4 cut(s) 245, 277, 311, 1205
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 1 cut(s) 51
BfmI CTRYAG 3 cut(s) 338, 1092, 1206
BfoI RGCGCY 1 cut(s) 1011
BisI GCNGC 3 cut(s) 1011, 1095, 1137
BlpI GCTNAGC 1 cut(s) 438
BlsI GCNGC 3 cut(s) 1012, 1096, 1138
Bme1390I CCNGG 3 cut(s) 583, 588, 1069
BmgT120I GGNCC 1 cut(s) 613
BmiI GGNNCC 4 cut(s) 93, 567, 945, 1104
BmrFI CCNGG 3 cut(s) 583, 588, 1069
BmsI GCATC 3 cut(s) 14, 77, 1186
BpiI GAAGAC 1 cut(s) 498
BpmI CTGGAG 1 cut(s) 1090
Bpu10I CCTNAGC 2 cut(s) 528, 704
Bpu1102I GCTNAGC 1 cut(s) 438
Bpu14I TTCGAA 1 cut(s) 654
BpuEI CTTGAG 1 cut(s) 705
Bsa29I ATCGAT 1 cut(s) 929
BsaAI YACGTR 1 cut(s) 1045
BsaBI GATNNNNATC 1 cut(s) 201
BsaHI GRCGYC 2 cut(s) 262, 473
BsaI GGTCTC 1 cut(s) 277
BsaJI CCNNGG 3 cut(s) 72, 224, 757
BsaWI WCCGGW 1 cut(s) 88
BsaXI ACNNNNNCTCC 2 cut(s) 1025, 1055
Bsc4I CCNNNNNNNGG 2 cut(s) 883, 1178
Bse118I RCCGGY 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 176
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 3 cut(s) 583, 588, 1069
BseCI ATCGAT 1 cut(s) 929
BseDI CCNNGG 3 cut(s) 72, 224, 757
BseGI GGATG 5 cut(s) 68, 767, 985, 1184, 1201
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 2 cut(s) 883, 1178
BseMII CTCAG 3 cut(s) 429, 468, 542
BseNI ACTGG 1 cut(s) 176
BseRI GAGGAG 3 cut(s) 536, 1046, 1049
BseXI GCAGC 3 cut(s) 997, 1106, 1123
BsgI GTGCAG 2 cut(s) 69, 1067
Bsh1236I CGCG 1 cut(s) 1062
BshFI GGCC 4 cut(s) 586, 591, 614, 1151
BshNI GGYRCC 1 cut(s) 1102
BshVI ATCGAT 1 cut(s) 929
BsiSI CCGG 3 cut(s) 89, 143, 314
BsiWI CGTACG 1 cut(s) 1041
BslI CCNNNNNNNGG 2 cut(s) 883, 1178
BsmAI GTCTC 4 cut(s) 245, 277, 311, 1205
BsnI GGCC 4 cut(s) 586, 591, 614, 1151
Bso31I GGTCTC 1 cut(s) 277
Bsp119I TTCGAA 1 cut(s) 654
Bsp1286I GDGCHC 3 cut(s) 548, 893, 962
Bsp143I GATC 6 cut(s) 14, 91, 202, 367, 593, 848
Bsp1720I GCTNAGC 1 cut(s) 438
Bsp19I CCATGG 1 cut(s) 757
BspACI CCGC 3 cut(s) 413, 515, 1097
BspANI GGCC 4 cut(s) 586, 591, 614, 1151
BspCNI CTCAG 3 cut(s) 430, 469, 541
BspDI ATCGAT 1 cut(s) 929
BspFNI CGCG 1 cut(s) 1062
BspLI GGNNCC 4 cut(s) 93, 567, 945, 1104
BspMAI CTGCAG 1 cut(s) 1096
BspPI GGATC 4 cut(s) 9, 86, 99, 375
BspT104I TTCGAA 1 cut(s) 654
BspT107I GGYRCC 1 cut(s) 1102
BspTNI GGTCTC 1 cut(s) 277
BsrFI RCCGGY 1 cut(s) 142
BsrI ACTGG 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 142
BssECI CCNNGG 3 cut(s) 72, 224, 757
BssMI GATC 6 cut(s) 14, 91, 202, 367, 593, 848
BssNI GRCGYC 2 cut(s) 262, 473
BssT1I CCWWGG 1 cut(s) 757
Bst2UI CCWGG 3 cut(s) 583, 588, 1069
Bst4CI ACNGT 4 cut(s) 118, 123, 449, 923
Bst6I CTCTTC 2 cut(s) 462, 1023
BstACI GRCGYC 2 cut(s) 262, 473
BstBAI YACGTR 1 cut(s) 1045
BstBI TTCGAA 1 cut(s) 654
BstC8I GCNNGC 2 cut(s) 31, 948
BstDEI CTNAG 4 cut(s) 438, 477, 528, 704
BstDSI CCRYGG 2 cut(s) 224, 757
BstEII GGTNACC 1 cut(s) 385
BstENI CCTNNNNNAGG 1 cut(s) 881
BstF5I GGATG 5 cut(s) 68, 767, 985, 1184, 1201
BstFNI CGCG 1 cut(s) 1062
BstH2I RGCGCY 1 cut(s) 1011
BstHHI GCGC 2 cut(s) 232, 1010
BstKTI GATC 6 cut(s) 17, 94, 205, 370, 596, 851
BstMAI GTCTC 4 cut(s) 245, 277, 311, 1205
BstMBI GATC 6 cut(s) 14, 91, 202, 367, 593, 848
BstMWI GCNNNNNNNGC 5 cut(s) 74, 83, 139, 419, 459
BstNI CCWGG 3 cut(s) 583, 588, 1069
BstNSI RCATGY 2 cut(s) 33, 827
BstPI GGTNACC 1 cut(s) 385
BstSCI CCNGG 3 cut(s) 581, 586, 1067
BstSFI CTRYAG 3 cut(s) 338, 1092, 1206
BstUI CGCG 1 cut(s) 1062
BstV1I GCAGC 3 cut(s) 997, 1106, 1123
BstV2I GAAGAC 1 cut(s) 498
BstX2I RGATCY 3 cut(s) 14, 91, 367
BstXI CCANNNNNNTGG 1 cut(s) 610
BstYI RGATCY 3 cut(s) 14, 91, 367
Bsu15I ATCGAT 1 cut(s) 929
BsuRI GGCC 4 cut(s) 586, 591, 614, 1151
BsuTUI ATCGAT 1 cut(s) 929
BtgI CCRYGG 2 cut(s) 224, 757
BtgZI GCGATG 1 cut(s) 114
BtsCI GGATG 5 cut(s) 68, 767, 985, 1184, 1201
BtsI GCAGTG 1 cut(s) 1089
BtsIMutI CAGTG 2 cut(s) 454, 1089
Cac8I GCNNGC 2 cut(s) 31, 948
CfoI GCGC 2 cut(s) 232, 1010
Cfr10I RCCGGY 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 613
ClaI ATCGAT 1 cut(s) 929
CseI GACGC 3 cut(s) 270, 462, 677
Csp6I GTAC 3 cut(s) 119, 1042, 1182
CviAII CATG 8 cut(s) 30, 135, 211, 248, 463, 539, 758, 824
CviQI GTAC 3 cut(s) 119, 1042, 1182
DdeI CTNAG 4 cut(s) 438, 477, 528, 704
DpnI GATC 6 cut(s) 16, 93, 204, 369, 595, 850
DpnII GATC 6 cut(s) 14, 91, 202, 367, 593, 848
Eam1104I CTCTTC 2 cut(s) 462, 1023
EarI CTCTTC 2 cut(s) 462, 1023
EciI GGCGGA 1 cut(s) 428
Eco130I CCWWGG 1 cut(s) 757
Eco24I GRGCYC 3 cut(s) 548, 893, 962
Eco31I GGTCTC 1 cut(s) 277
Eco57I CTGAAG 4 cut(s) 9, 879, 1023, 1221
Eco91I GGTNACC 1 cut(s) 385
EcoNI CCTNNNNNAGG 1 cut(s) 881
EcoO65I GGTNACC 1 cut(s) 385
EcoRII CCWGG 3 cut(s) 581, 586, 1067
EcoT14I CCWWGG 1 cut(s) 757
EcoT38I GRGCYC 3 cut(s) 548, 893, 962
ErhI CCWWGG 1 cut(s) 757
FaeI CATG 8 cut(s) 33, 138, 214, 251, 466, 542, 761, 827
FatI CATG 8 cut(s) 29, 134, 210, 247, 462, 538, 757, 823
Fnu4HI GCNGC 3 cut(s) 1011, 1095, 1137
FokI GGATG 5 cut(s) 55, 774, 992, 1171, 1208
FriOI GRGCYC 3 cut(s) 548, 893, 962
Fsp4HI GCNGC 3 cut(s) 1011, 1095, 1137
FspBI CTAG 1 cut(s) 51
GlaI GCGC 2 cut(s) 231, 1009
GluI GCNGC 3 cut(s) 1011, 1095, 1137
GsuI CTGGAG 1 cut(s) 1090
HaeII RGCGCY 1 cut(s) 1011
HaeIII GGCC 4 cut(s) 586, 591, 614, 1151
HapII CCGG 3 cut(s) 89, 143, 314
HgaI GACGC 3 cut(s) 270, 462, 677
HhaI GCGC 2 cut(s) 232, 1010
Hin1I GRCGYC 2 cut(s) 262, 473
Hin1II CATG 8 cut(s) 33, 138, 214, 251, 466, 542, 761, 827
Hin6I GCGC 2 cut(s) 230, 1008
HinP1I GCGC 2 cut(s) 230, 1008
HincII GTYRAC 2 cut(s) 483, 661
HindII GTYRAC 2 cut(s) 483, 661
HinfI GANTC 3 cut(s) 479, 753, 1037
HpaII CCGG 3 cut(s) 89, 143, 314
HphI GGTGA 4 cut(s) 144, 397, 898, 1028
Hpy166II GTNNAC 3 cut(s) 241, 483, 661
Hpy188I TCNGA 2 cut(s) 478, 1003
Hpy188III TCNNGA 1 cut(s) 857
Hpy8I GTNNAC 3 cut(s) 241, 483, 661
HpyAV CCTTC 6 cut(s) 294, 418, 583, 998, 1141, 1211
HpyCH4III ACNGT 4 cut(s) 118, 123, 449, 923
HpyCH4IV ACGT 1 cut(s) 1044
HpyCH4V TGCA 6 cut(s) 68, 86, 1048, 1094, 1139, 1167
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 83, 139, 419, 459
HpyF3I CTNAG 4 cut(s) 438, 477, 528, 704
HpySE526I ACGT 1 cut(s) 1044
Hsp92I GRCGYC 2 cut(s) 262, 473
Hsp92II CATG 8 cut(s) 33, 138, 214, 251, 466, 542, 761, 827
HspAI GCGC 2 cut(s) 230, 1008
Kzo9I GATC 6 cut(s) 14, 91, 202, 367, 593, 848
LmnI GCTCC 1 cut(s) 943
Lsp1109I GCAGC 3 cut(s) 997, 1106, 1123
LweI GCATC 3 cut(s) 14, 77, 1186
MaeI CTAG 1 cut(s) 51
MaeII ACGT 1 cut(s) 1044
MaeIII GTNAC 5 cut(s) 150, 169, 385, 841, 1073
MalI GATC 6 cut(s) 16, 93, 204, 369, 595, 850
MboI GATC 6 cut(s) 14, 91, 202, 367, 593, 848
MboII GAAGA 7 cut(s) 279, 479, 503, 847, 1037, 1040, 1049
MflI RGATCY 3 cut(s) 14, 91, 367
MhlI GDGCHC 3 cut(s) 548, 893, 962
MluCI AATT 5 cut(s) 296, 711, 803, 852, 1127
MlyI GAGTC 3 cut(s) 488, 747, 1046
MmeI TCCRAC 1 cut(s) 1212
MroXI GAANNNNTTC 2 cut(s) 191, 300
MseI TTAA 3 cut(s) 782, 974, 1112
MslI CAYNNNNRTG 2 cut(s) 133, 447
MspA1I CMGCKG 1 cut(s) 1097
MspI CCGG 3 cut(s) 89, 143, 314
MspR9I CCNGG 3 cut(s) 583, 588, 1069
MvaI CCWGG 3 cut(s) 583, 588, 1069
MvnI CGCG 1 cut(s) 1062
MwoI GCNNNNNNNGC 5 cut(s) 74, 83, 139, 419, 459
NcoI CCATGG 1 cut(s) 757
NdeII GATC 6 cut(s) 14, 91, 202, 367, 593, 848
NlaIII CATG 8 cut(s) 33, 138, 214, 251, 466, 542, 761, 827
NlaIV GGNNCC 4 cut(s) 93, 567, 945, 1104
NmeAIII GCCGAG 1 cut(s) 53
NmuCI GTSAC 3 cut(s) 150, 385, 841
NspI RCATGY 2 cut(s) 33, 827
NspV TTCGAA 1 cut(s) 654
PaeI GCATGC 1 cut(s) 33
PciI ACATGT 1 cut(s) 823
PcsI WCGNNNNNNNCGW 4 cut(s) 44, 122, 660, 675
PdmI GAANNNNTTC 2 cut(s) 191, 300
Pfl23II CGTACG 1 cut(s) 1041
PflMI CCANNNNNTGG 1 cut(s) 1178
PkrI GCNGC 3 cut(s) 1012, 1096, 1138
PleI GAGTC 3 cut(s) 487, 747, 1045
PpsI GAGTC 3 cut(s) 487, 747, 1045
Ppu21I YACGTR 1 cut(s) 1045
PscI ACATGT 1 cut(s) 823
PsiI TTATAA 1 cut(s) 309
Psp6I CCWGG 3 cut(s) 581, 586, 1067
PspEI GGTNACC 1 cut(s) 385
PspGI CCWGG 3 cut(s) 581, 586, 1067
PspLI CGTACG 1 cut(s) 1041
PspN4I GGNNCC 4 cut(s) 93, 567, 945, 1104
PspPI GGNCC 1 cut(s) 613
PstI CTGCAG 1 cut(s) 1096
PsuI RGATCY 3 cut(s) 14, 91, 367
RsaI GTAC 3 cut(s) 120, 1043, 1183
RsaNI GTAC 3 cut(s) 119, 1042, 1182
RseI CAYNNNNRTG 2 cut(s) 133, 447
SaqAI TTAA 3 cut(s) 782, 974, 1112
SatI GCNGC 3 cut(s) 1011, 1095, 1137
Sau3AI GATC 6 cut(s) 14, 91, 202, 367, 593, 848
Sau96I GGNCC 1 cut(s) 613
SchI GAGTC 3 cut(s) 488, 747, 1046
ScrFI CCNGG 3 cut(s) 583, 588, 1069
SduI GDGCHC 3 cut(s) 548, 893, 962
SfaNI GCATC 3 cut(s) 14, 77, 1186
SfcI CTRYAG 3 cut(s) 338, 1092, 1206
SfuI TTCGAA 1 cut(s) 654
SmiMI CAYNNNNRTG 2 cut(s) 133, 447
SmlI CTYRAG 1 cut(s) 720
SmoI CTYRAG 1 cut(s) 720
SpeI ACTAGT 1 cut(s) 50
SphI GCATGC 1 cut(s) 33
Sse9I AATT 5 cut(s) 296, 711, 803, 852, 1127
SsiI CCGC 3 cut(s) 413, 515, 1097
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 3 cut(s) 581, 586, 1067
StyI CCWWGG 1 cut(s) 757
TaaI ACNGT 4 cut(s) 118, 123, 449, 923
TaiI ACGT 1 cut(s) 1047
TaqI TCGA 7 cut(s) 47, 195, 654, 799, 807, 833, 929
TaqII GACCGA 1 cut(s) 404
TasI AATT 5 cut(s) 296, 711, 803, 852, 1127
Tru1I TTAA 3 cut(s) 782, 974, 1112
Tru9I TTAA 3 cut(s) 782, 974, 1112
TscAI CASTG 2 cut(s) 454, 1096
TseFI GTSAC 3 cut(s) 150, 385, 841
TseI GCWGC 3 cut(s) 1010, 1094, 1136
Tsp45I GTSAC 3 cut(s) 150, 385, 841
TspDTI ATGAA 5 cut(s) 365, 413, 711, 996, 1097
TspGWI ACGGA 1 cut(s) 578
TspRI CASTG 2 cut(s) 454, 1096
Van91I CCANNNNNTGG 1 cut(s) 1178
XagI CCTNNNNNAGG 1 cut(s) 881
XapI RAATTY 1 cut(s) 1127
XceI RCATGY 2 cut(s) 33, 827
XcmI CCANNNNNNNNNTGG 1 cut(s) 607
XmnI GAANNNNTTC 2 cut(s) 191, 300
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.