Rroxscaffold_6G00400500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001250
Physical Location & Seq
Reverse (-)
22606850 .. 22608795
1946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00400500.1

Sequence Viewer

Length: 645 bp
ATGGCTACTGTACTCTCTGGTGCAGATGAGTTGCATTTGCAACTTCACCAAACGATAAAAAGATTGGTGGCGAATGCCACATCCGAGTCCAAGAAGATATTTGAATCAGGAGCAGATCGCCCACAGGAATCAGAGAATGCGGTTCCTGTTTCTTATCTTCCCGCAGATGATGAAGGCGAGAAGATAGTAAAAATGTTGGAGGAAAAACACGAAGCAAGAGTTATGACGTTTCCTGTTGAGGAAACTTCCTTTTCATTCCAACTTCCAGCAGATTTTCCTCTTCATCAGATCGACGTGGAAAAGTTGGTGCCCCCTGAGAGGGAAGTTACTGGTACAAGTGGGTGTATCCGTAAATTTTCGTTCTTTGAAAGGCTCAAGGGATGGAATATTGAGGTTAGACGAAGACAAACTGGACGTGCCCTTGACTCGTATTTCTATCACGAGAAGTTCAACAAAGTTTTGCGATCCGTTATAGAGGTGGTAGGTTTCATCCTCTATGAAGATCCAACGGCTGTGAAATCTGAAAAGAGAAAGGCAGCATCGACTTTACCAAAGGAAGAATCCAGTACCAAAAGACTCAACGTGGAGATGAAACAAAGTGAGGATTTCAATATCCAAGATGGCAATGAATTAACTATATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook

Protein Analysis

214

Amino Acids

24.48

Weight (kDa)

5.53

Isoelectric Point (pI)

65.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 307
AciI CCGC 2 cut(s) 140, 162
AclWI GGATC 2 cut(s) 459, 497
AcsI RAATTY 1 cut(s) 353
AfaI GTAC 3 cut(s) 12, 334, 568
AfiI CCNNNNNNNGG 2 cut(s) 318, 319
AgsI TTSAA 4 cut(s) 104, 368, 451, 610
AjiI CACGTC 2 cut(s) 295, 416
AlwI GGATC 2 cut(s) 459, 497
ApeKI GCWGC 1 cut(s) 536
ApoI RAATTY 1 cut(s) 353
AsuHPI GGTGA 1 cut(s) 38
BaeGI GKGCMC 2 cut(s) 312, 421
BanI GGYRCC 1 cut(s) 307
BauI CACGAG 1 cut(s) 440
BbsI GAAGAC 1 cut(s) 409
BbvI GCAGC 1 cut(s) 548
BccI CCATC 2 cut(s) 375, 614
BceAI ACGGC 1 cut(s) 525
BciVI GTATCC 1 cut(s) 356
BfuI GTATCC 1 cut(s) 356
BisI GCNGC 1 cut(s) 537
BlsI GCNGC 1 cut(s) 538
BmgBI CACGTC 2 cut(s) 295, 416
BmiI GGNNCC 2 cut(s) 144, 309
BmsI GCATC 1 cut(s) 548
BpiI GAAGAC 1 cut(s) 409
BpuEI CTTGAG 1 cut(s) 359
Bsc4I CCNNNNNNNGG 2 cut(s) 318, 319
Bse1I ACTGG 3 cut(s) 334, 415, 564
Bse3DI GCAATG 1 cut(s) 631
BseGI GGATG 3 cut(s) 80, 386, 489
BseLI CCNNNNNNNGG 2 cut(s) 318, 319
BseMI GCAATG 1 cut(s) 631
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 3 cut(s) 334, 415, 564
BseSI GKGCMC 2 cut(s) 312, 421
BseXI GCAGC 1 cut(s) 548
BsgI GTGCAG 1 cut(s) 42
BshNI GGYRCC 1 cut(s) 307
BslI CCNNNNNNNGG 2 cut(s) 318, 319
BsmI GAATGC 2 cut(s) 79, 142
Bsp1286I GDGCHC 2 cut(s) 312, 421
Bsp143I GATC 4 cut(s) 115, 288, 464, 502
BspACI CCGC 2 cut(s) 140, 162
BspCNI CTCAG 1 cut(s) 307
BspLI GGNNCC 2 cut(s) 144, 309
BspPI GGATC 2 cut(s) 459, 497
BspT107I GGYRCC 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 631
BsrI ACTGG 3 cut(s) 334, 415, 564
BssMI GATC 4 cut(s) 115, 288, 464, 502
BssSI CACGAG 1 cut(s) 440
Bst2BI CACGAG 1 cut(s) 440
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 1 cut(s) 285
BstDEI CTNAG 1 cut(s) 315
BstF5I GGATG 3 cut(s) 80, 386, 489
BstKTI GATC 4 cut(s) 118, 291, 467, 505
BstMBI GATC 4 cut(s) 115, 288, 464, 502
BstSLI GKGCMC 2 cut(s) 312, 421
BstV1I GCAGC 1 cut(s) 548
BstV2I GAAGAC 1 cut(s) 409
BstX2I RGATCY 1 cut(s) 502
BstYI RGATCY 1 cut(s) 502
BsuI GTATCC 1 cut(s) 356
BtrI CACGTC 2 cut(s) 295, 416
BtsCI GGATG 3 cut(s) 80, 386, 489
Csp6I GTAC 3 cut(s) 11, 333, 567
CviJI RGCY 3 cut(s) 5, 373, 512
CviKI_1 RGCY 3 cut(s) 5, 373, 512
CviQI GTAC 3 cut(s) 11, 333, 567
DdeI CTNAG 1 cut(s) 315
DpnI GATC 4 cut(s) 117, 290, 466, 504
DpnII GATC 4 cut(s) 115, 288, 464, 502
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
FaiI YATR 5 cut(s) 224, 473, 498, 638, 640
FauI CCCGC 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 537
FokI GGATG 3 cut(s) 67, 393, 476
Fsp4HI GCNGC 1 cut(s) 537
GluI GCNGC 1 cut(s) 537
HinfI GANTC 6 cut(s) 86, 104, 128, 425, 560, 576
HphI GGTGA 1 cut(s) 38
Hpy188I TCNGA 4 cut(s) 85, 133, 288, 523
Hpy188III TCNNGA 2 cut(s) 108, 440
Hpy99I CGWCG 1 cut(s) 296
HpyAV CCTTC 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 4 cut(s) 227, 294, 415, 582
HpyCH4V TGCA 3 cut(s) 23, 34, 40
HpyF3I CTNAG 1 cut(s) 315
HpySE526I ACGT 4 cut(s) 227, 294, 415, 582
Kzo9I GATC 4 cut(s) 115, 288, 464, 502
LmnI GCTCC 1 cut(s) 110
Lsp1109I GCAGC 1 cut(s) 548
LweI GCATC 1 cut(s) 548
MaeII ACGT 4 cut(s) 227, 294, 415, 582
MaeIII GTNAC 1 cut(s) 325
MalI GATC 4 cut(s) 117, 290, 466, 504
MboI GATC 4 cut(s) 115, 288, 464, 502
MboII GAAGA 7 cut(s) 106, 149, 193, 272, 414, 512, 569
MflI RGATCY 1 cut(s) 502
MhlI GDGCHC 2 cut(s) 312, 421
MluCI AATT 2 cut(s) 353, 629
MlyI GAGTC 3 cut(s) 95, 419, 570
MmeI TCCRAC 3 cut(s) 177, 283, 530
MnlI CCTC 8 cut(s) 193, 232, 288, 312, 385, 469, 503, 595
MseI TTAA 1 cut(s) 632
Mva1269I GAATGC 2 cut(s) 79, 142
NdeII GATC 4 cut(s) 115, 288, 464, 502
NlaIV GGNNCC 2 cut(s) 144, 309
PctI GAATGC 2 cut(s) 79, 142
PfeI GAWTC 3 cut(s) 104, 128, 560
PkrI GCNGC 1 cut(s) 538
PleI GAGTC 3 cut(s) 94, 419, 570
PpsI GAGTC 3 cut(s) 94, 419, 570
PspN4I GGNNCC 2 cut(s) 144, 309
PsuI RGATCY 1 cut(s) 502
RsaI GTAC 3 cut(s) 12, 334, 568
RsaNI GTAC 3 cut(s) 11, 333, 567
SaqAI TTAA 1 cut(s) 632
SatI GCNGC 1 cut(s) 537
Sau3AI GATC 4 cut(s) 115, 288, 464, 502
SchI GAGTC 3 cut(s) 95, 419, 570
SduI GDGCHC 2 cut(s) 312, 421
SetI ASST 7 cut(s) 230, 297, 396, 418, 480, 487, 585
SfaNI GCATC 1 cut(s) 548
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 2 cut(s) 353, 629
SsiI CCGC 2 cut(s) 140, 162
SspI AATATT 1 cut(s) 388
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 4 cut(s) 230, 297, 418, 585
TaqI TCGA 2 cut(s) 291, 542
TasI AATT 2 cut(s) 353, 629
TatI WGTACW 1 cut(s) 10
TfiI GAWTC 3 cut(s) 104, 128, 560
Tru1I TTAA 1 cut(s) 632
Tru9I TTAA 1 cut(s) 632
TseI GCWGC 1 cut(s) 536
TspDTI ATGAA 7 cut(s) 186, 243, 272, 478, 513, 605, 642
TspGWI ACGGA 2 cut(s) 338, 457
XapI RAATTY 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.