Rroxscaffold_5G00336460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001250
Physical Location & Seq
Reverse (-)
4269878 .. 4274640
4763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00336460.1

Sequence Viewer

Length: 1272 bp
ATGGCATCACCCAGATCCTCCACTTCAGCATGGTTGTCGCCATCATCAACTAGTAGCACTTCACTTGCATCCTCGGCTACAACTGCACCGGCTCCCTCACCACCCAAGTTTGACACGGTACTGTCGTCATCCCCATGTCAGCCGGCAGTGTCACCACCACCCCAATCTGTAACACCAGTTCCACAGATGCCGTTCGATTTAGATCAGGTCATGGGCAACTTTCCACAGGCGCAAATAGTGGACTACCATGAGACACAAAGACGCCAAGTGGTCTCTCCATCTCCTTCTTCAAAGGAATTGGTTCTTTATAAGCCGGAGACACAGCGACAAGAAAATCTACAGGAACGACTTGGGCAAGTCATCAAGGATCTTGTTCATAAAGAGGTGACCGAGTTGATGAAACAAGCAGAGGCGGAGATAGCGAAGGAACGAAAGGCTGAGCATTACAGTGGCAGAAGTAGCATGCAGGAAGAGGCGTCTGAGTCAACGAAGGAAGACAATAAACTGATGATAGTAGCGGTAGAGGAGGCTCAGGCTGACTATGAGAGCCCTAAAATAACGAACACGGAACCGACCTTCACTACCAGGCCAGGCCGATCAGCCACCAAACTAATGGCCCATATTTCCAATGTGTCCTTTCAAATGCCTGATGATTTTGAAGTTGACGATGACACAATAAACGAGTTTGTGCCTAATGATGAAGTGCTCAGGGAAATTACTGCTCAAGGTAGGAAAAAATATAGTTTCTTTGACAGACTTCATGGATGGAAAATGGAGTGTAGATTAAGACTGAATGGCGTTCGACAATTCGATAAGTATTTCACACACGTTCAATCGAAGATTGTGACGAGATCAATTCCTGAAGTTGTGAGGTTTATCCTTTATGAGGTGAGCCCTAAACAAATGAGGGAAGCCAACAGCAAACGTAAATCGATAGATTTTTGGGAGCCAGCTAATGAGAGCCCTAAAAATATATTAAAGGACGAATACCCAAGTATGTCGTCTGAAGGCGCTGCTAGTGATTTTGAAGAAGAGGAGGAGTCGTACGTGCAGATGTTTCTTCGCGTAGCCTGGAGTAACCTGATGAACGGCACTGCAGAGGAGGTGCCATTGTTAAGTGAATGGGAAAAATTCAAGGCTGCGAAAAAGAAGGACAGAACTACACCTTGCAAACCAGAGGTTGGTACATCCAACATGGATGCTGAAGCTGTAGAGACAGCAAACGCCTTGATGGGACTAGCTGACGATGAAATGAATGATGAAGGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook

Protein Analysis

423

Amino Acids

47.62

Weight (kDa)

4.95

Isoelectric Point (pI)

63.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
AccB1I GGYRCC 1 cut(s) 1105
AccB7I CCANNNNNTGG 1 cut(s) 1181
AccII CGCG 1 cut(s) 1065
AciI CCGC 2 cut(s) 413, 518
AclWI GGATC 2 cut(s) 9, 375
AcsI RAATTY 1 cut(s) 1130
AcuI CTGAAG 4 cut(s) 9, 882, 1026, 1224
AcyI GRCGYC 2 cut(s) 262, 476
AfaI GTAC 3 cut(s) 120, 1046, 1186
AfiI CCNNNNNNNGG 2 cut(s) 886, 1181
AflIII ACRYGT 1 cut(s) 826
AgsI TTSAA 6 cut(s) 291, 641, 659, 833, 1028, 1135
AhlI ACTAGT 1 cut(s) 50
AjnI CCWGG 3 cut(s) 584, 589, 1070
AluBI AGCT 3 cut(s) 953, 1208, 1241
AluI AGCT 3 cut(s) 953, 1208, 1241
Alw21I GWGCWC 1 cut(s) 708
Alw26I GTCTC 4 cut(s) 245, 277, 311, 1208
AlwI GGATC 2 cut(s) 9, 375
AoxI GGCC 3 cut(s) 587, 592, 615
ApeKI GCWGC 2 cut(s) 1013, 1139
ApoI RAATTY 1 cut(s) 1130
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 2 cut(s) 232, 1013
AspS9I GGNCC 1 cut(s) 616
AsuHPI GGTGA 4 cut(s) 90, 144, 397, 901
BaeI ACNNNNGTAYC 2 cut(s) 110, 143
BanI GGYRCC 1 cut(s) 1105
BanII GRGCYC 3 cut(s) 551, 896, 965
BbsI GAAGAC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 708
BbvI GCAGC 2 cut(s) 1000, 1126
BccI CCATC 4 cut(s) 49, 286, 759, 1225
BceAI ACGGC 2 cut(s) 175, 1105
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BciT130I CCWGG 3 cut(s) 586, 591, 1072
BcoDI GTCTC 4 cut(s) 245, 277, 311, 1208
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 3 cut(s) 51, 1017, 1238
BfmI CTRYAG 3 cut(s) 338, 1095, 1209
BfoI RGCGCY 1 cut(s) 1014
BisI GCNGC 2 cut(s) 1014, 1140
BlpI GCTNAGC 1 cut(s) 438
BlsI GCNGC 2 cut(s) 1015, 1141
Bme1390I CCNGG 3 cut(s) 586, 591, 1072
BmgT120I GGNCC 1 cut(s) 616
BmiI GGNNCC 4 cut(s) 93, 570, 948, 1107
BmrFI CCNGG 3 cut(s) 586, 591, 1072
BmsI GCATC 4 cut(s) 14, 77, 177, 1189
BpiI GAAGAC 1 cut(s) 501
BpmI CTGGAG 1 cut(s) 1093
Bpu10I CCTNAGC 2 cut(s) 531, 707
Bpu1102I GCTNAGC 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 708
Bsa29I ATCGAT 1 cut(s) 932
BsaAI YACGTR 1 cut(s) 1048
BsaBI GATNNNNATC 1 cut(s) 201
BsaHI GRCGYC 2 cut(s) 262, 476
BsaI GGTCTC 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 1028, 1058
Bsc4I CCNNNNNNNGG 2 cut(s) 886, 1181
Bse118I RCCGGY 2 cut(s) 88, 142
Bse1I ACTGG 1 cut(s) 176
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 3 cut(s) 586, 591, 1072
BseCI ATCGAT 1 cut(s) 932
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 5 cut(s) 68, 128, 770, 1187, 1204
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 2 cut(s) 886, 1181
BseMII CTCAG 4 cut(s) 429, 471, 545, 721
BseNI ACTGG 1 cut(s) 176
BseRI GAGGAG 4 cut(s) 539, 1049, 1052, 1115
BseXI GCAGC 2 cut(s) 1000, 1126
BsgI GTGCAG 2 cut(s) 69, 1070
Bsh1236I CGCG 1 cut(s) 1065
BshFI GGCC 3 cut(s) 589, 594, 617
BshNI GGYRCC 1 cut(s) 1105
BshVI ATCGAT 1 cut(s) 932
BsiHKAI GWGCWC 1 cut(s) 708
BsiSI CCGG 3 cut(s) 89, 143, 314
BsiWI CGTACG 1 cut(s) 1044
BslFI GGGAC 1 cut(s) 1248
BslI CCNNNNNNNGG 2 cut(s) 886, 1181
BsmAI GTCTC 4 cut(s) 245, 277, 311, 1208
BsmFI GGGAC 1 cut(s) 1248
BsnI GGCC 3 cut(s) 589, 594, 617
Bso31I GGTCTC 1 cut(s) 277
Bsp1286I GDGCHC 4 cut(s) 551, 708, 896, 965
Bsp143I GATC 5 cut(s) 14, 202, 367, 596, 851
Bsp1720I GCTNAGC 1 cut(s) 438
BspACI CCGC 2 cut(s) 413, 518
BspANI GGCC 3 cut(s) 589, 594, 617
BspCNI CTCAG 4 cut(s) 430, 472, 544, 720
BspDI ATCGAT 1 cut(s) 932
BspFNI CGCG 1 cut(s) 1065
BspLI GGNNCC 4 cut(s) 93, 570, 948, 1107
BspMAI CTGCAG 1 cut(s) 1099
BspPI GGATC 2 cut(s) 9, 375
BspT107I GGYRCC 1 cut(s) 1105
BspTNI GGTCTC 1 cut(s) 277
BsrFI RCCGGY 2 cut(s) 88, 142
BsrI ACTGG 1 cut(s) 176
BssAI RCCGGY 2 cut(s) 88, 142
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 5 cut(s) 14, 202, 367, 596, 851
BssNI GRCGYC 2 cut(s) 262, 476
Bst2UI CCWGG 3 cut(s) 586, 591, 1072
Bst4CI ACNGT 3 cut(s) 118, 123, 449
Bst6I CTCTTC 2 cut(s) 465, 1026
BstACI GRCGYC 2 cut(s) 262, 476
BstBAI YACGTR 1 cut(s) 1048
BstC8I GCNNGC 3 cut(s) 144, 464, 951
BstDEI CTNAG 4 cut(s) 438, 480, 531, 707
BstEII GGTNACC 1 cut(s) 385
BstENI CCTNNNNNAGG 1 cut(s) 884
BstF5I GGATG 5 cut(s) 68, 128, 770, 1187, 1204
BstFNI CGCG 1 cut(s) 1065
BstH2I RGCGCY 1 cut(s) 1014
BstHHI GCGC 2 cut(s) 232, 1013
BstKTI GATC 5 cut(s) 17, 205, 370, 599, 854
BstMAI GTCTC 4 cut(s) 245, 277, 311, 1208
BstMBI GATC 5 cut(s) 14, 202, 367, 596, 851
BstMWI GCNNNNNNNGC 4 cut(s) 74, 83, 419, 459
BstNI CCWGG 3 cut(s) 586, 591, 1072
BstNSI RCATGY 1 cut(s) 466
BstPI GGTNACC 1 cut(s) 385
BstSCI CCNGG 3 cut(s) 584, 589, 1070
BstSFI CTRYAG 3 cut(s) 338, 1095, 1209
BstUI CGCG 1 cut(s) 1065
BstV1I GCAGC 2 cut(s) 1000, 1126
BstV2I GAAGAC 1 cut(s) 501
BstX2I RGATCY 2 cut(s) 14, 367
BstXI CCANNNNNNTGG 1 cut(s) 613
BstYI RGATCY 2 cut(s) 14, 367
Bsu15I ATCGAT 1 cut(s) 932
BsuRI GGCC 3 cut(s) 589, 594, 617
BsuTUI ATCGAT 1 cut(s) 932
BtsCI GGATG 5 cut(s) 68, 128, 770, 1187, 1204
BtsI GCAGTG 2 cut(s) 153, 1092
BtsIMutI CAGTG 3 cut(s) 153, 454, 1092
Cac8I GCNNGC 3 cut(s) 144, 464, 951
CfoI GCGC 2 cut(s) 232, 1013
Cfr10I RCCGGY 2 cut(s) 88, 142
Cfr13I GGNCC 1 cut(s) 616
ClaI ATCGAT 1 cut(s) 932
CseI GACGC 2 cut(s) 270, 465
Csp6I GTAC 3 cut(s) 119, 1045, 1185
CviAII CATG 7 cut(s) 30, 135, 211, 248, 463, 761, 1195
CviQI GTAC 3 cut(s) 119, 1045, 1185
DdeI CTNAG 4 cut(s) 438, 480, 531, 707
DpnI GATC 5 cut(s) 16, 204, 369, 598, 853
DpnII GATC 5 cut(s) 14, 202, 367, 596, 851
Eam1104I CTCTTC 2 cut(s) 465, 1026
EarI CTCTTC 2 cut(s) 465, 1026
EciI GGCGGA 1 cut(s) 428
Eco24I GRGCYC 3 cut(s) 551, 896, 965
Eco31I GGTCTC 1 cut(s) 277
Eco57I CTGAAG 4 cut(s) 9, 882, 1026, 1224
Eco91I GGTNACC 1 cut(s) 385
EcoNI CCTNNNNNAGG 1 cut(s) 884
EcoO65I GGTNACC 1 cut(s) 385
EcoRII CCWGG 3 cut(s) 584, 589, 1070
EcoT38I GRGCYC 3 cut(s) 551, 896, 965
FaeI CATG 7 cut(s) 33, 138, 214, 251, 466, 764, 1198
FaqI GGGAC 1 cut(s) 1248
FatI CATG 7 cut(s) 29, 134, 210, 247, 462, 760, 1194
Fnu4HI GCNGC 2 cut(s) 1014, 1140
FokI GGATG 5 cut(s) 55, 115, 777, 1174, 1211
FriOI GRGCYC 3 cut(s) 551, 896, 965
Fsp4HI GCNGC 2 cut(s) 1014, 1140
FspBI CTAG 3 cut(s) 51, 1017, 1238
GlaI GCGC 2 cut(s) 231, 1012
GluI GCNGC 2 cut(s) 1014, 1140
GsuI CTGGAG 1 cut(s) 1093
HaeII RGCGCY 1 cut(s) 1014
HaeIII GGCC 3 cut(s) 589, 594, 617
HapII CCGG 3 cut(s) 89, 143, 314
HgaI GACGC 2 cut(s) 270, 465
HhaI GCGC 2 cut(s) 232, 1013
Hin1I GRCGYC 2 cut(s) 262, 476
Hin1II CATG 7 cut(s) 33, 138, 214, 251, 466, 764, 1198
Hin6I GCGC 2 cut(s) 230, 1011
HinP1I GCGC 2 cut(s) 230, 1011
HincII GTYRAC 2 cut(s) 486, 664
HindII GTYRAC 2 cut(s) 486, 664
HinfI GANTC 2 cut(s) 482, 1040
HpaII CCGG 3 cut(s) 89, 143, 314
HphI GGTGA 4 cut(s) 90, 144, 397, 901
Hpy166II GTNNAC 3 cut(s) 241, 486, 664
Hpy188I TCNGA 2 cut(s) 481, 1006
Hpy188III TCNNGA 1 cut(s) 860
Hpy8I GTNNAC 3 cut(s) 241, 486, 664
HpyAV CCTTC 7 cut(s) 294, 418, 484, 586, 1001, 1144, 1256
HpyCH4III ACNGT 3 cut(s) 118, 123, 449
HpyCH4IV ACGT 3 cut(s) 828, 925, 1047
HpyCH4V TGCA 6 cut(s) 68, 86, 466, 1051, 1097, 1170
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 83, 419, 459
HpyF3I CTNAG 4 cut(s) 438, 480, 531, 707
HpySE526I ACGT 3 cut(s) 828, 925, 1047
Hsp92I GRCGYC 2 cut(s) 262, 476
Hsp92II CATG 7 cut(s) 33, 138, 214, 251, 466, 764, 1198
HspAI GCGC 2 cut(s) 230, 1011
KroI GCCGGC 1 cut(s) 142
KroNI GCCGGC 1 cut(s) 144
Kzo9I GATC 5 cut(s) 14, 202, 367, 596, 851
LmnI GCTCC 2 cut(s) 97, 946
Lsp1109I GCAGC 2 cut(s) 1000, 1126
LweI GCATC 4 cut(s) 14, 77, 177, 1189
MaeI CTAG 3 cut(s) 51, 1017, 1238
MaeII ACGT 3 cut(s) 828, 925, 1047
MaeIII GTNAC 5 cut(s) 150, 169, 385, 844, 1076
MalI GATC 5 cut(s) 16, 204, 369, 598, 853
MboI GATC 5 cut(s) 14, 202, 367, 596, 851
MboII GAAGA 7 cut(s) 279, 482, 506, 850, 1040, 1043, 1052
MflI RGATCY 2 cut(s) 14, 367
MhlI GDGCHC 4 cut(s) 551, 708, 896, 965
MluCI AATT 5 cut(s) 296, 714, 806, 855, 1130
MlyI GAGTC 2 cut(s) 491, 1049
MmeI TCCRAC 1 cut(s) 1215
MroNI GCCGGC 1 cut(s) 142
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 3 cut(s) 785, 977, 1115
MslI CAYNNNNRTG 2 cut(s) 133, 447
MspI CCGG 3 cut(s) 89, 143, 314
MspR9I CCNGG 3 cut(s) 586, 591, 1072
MvaI CCWGG 3 cut(s) 586, 591, 1072
MvnI CGCG 1 cut(s) 1065
MwoI GCNNNNNNNGC 4 cut(s) 74, 83, 419, 459
NaeI GCCGGC 1 cut(s) 144
NdeII GATC 5 cut(s) 14, 202, 367, 596, 851
NgoMIV GCCGGC 1 cut(s) 142
NlaIII CATG 7 cut(s) 33, 138, 214, 251, 466, 764, 1198
NlaIV GGNNCC 4 cut(s) 93, 570, 948, 1107
NmeAIII GCCGAG 1 cut(s) 53
NmuCI GTSAC 3 cut(s) 150, 385, 844
NspI RCATGY 1 cut(s) 466
PaeI GCATGC 1 cut(s) 466
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PdiI GCCGGC 1 cut(s) 144
PdmI GAANNNNTTC 1 cut(s) 300
Pfl23II CGTACG 1 cut(s) 1044
PflMI CCANNNNNTGG 1 cut(s) 1181
PkrI GCNGC 2 cut(s) 1015, 1141
PleI GAGTC 2 cut(s) 490, 1048
PpsI GAGTC 2 cut(s) 490, 1048
Ppu21I YACGTR 1 cut(s) 1048
PsiI TTATAA 1 cut(s) 309
Psp6I CCWGG 3 cut(s) 584, 589, 1070
PspEI GGTNACC 1 cut(s) 385
PspGI CCWGG 3 cut(s) 584, 589, 1070
PspLI CGTACG 1 cut(s) 1044
PspN4I GGNNCC 4 cut(s) 93, 570, 948, 1107
PspPI GGNCC 1 cut(s) 616
PsrI GAACNNNNNNTAC 2 cut(s) 162, 194
PstI CTGCAG 1 cut(s) 1099
PsuI RGATCY 2 cut(s) 14, 367
RsaI GTAC 3 cut(s) 120, 1046, 1186
RsaNI GTAC 3 cut(s) 119, 1045, 1185
RseI CAYNNNNRTG 2 cut(s) 133, 447
SaqAI TTAA 3 cut(s) 785, 977, 1115
SatI GCNGC 2 cut(s) 1014, 1140
Sau3AI GATC 5 cut(s) 14, 202, 367, 596, 851
Sau96I GGNCC 1 cut(s) 616
SchI GAGTC 2 cut(s) 491, 1049
ScrFI CCNGG 3 cut(s) 586, 591, 1072
SduI GDGCHC 4 cut(s) 551, 708, 896, 965
SfaNI GCATC 4 cut(s) 14, 77, 177, 1189
SfcI CTRYAG 3 cut(s) 338, 1095, 1209
SmiMI CAYNNNNRTG 2 cut(s) 133, 447
SmlI CTYRAG 1 cut(s) 723
SmoI CTYRAG 1 cut(s) 723
SpeI ACTAGT 1 cut(s) 50
SphI GCATGC 1 cut(s) 466
Sse9I AATT 5 cut(s) 296, 714, 806, 855, 1130
SsiI CCGC 2 cut(s) 413, 518
SspMI CTAG 3 cut(s) 51, 1017, 1238
StyD4I CCNGG 3 cut(s) 584, 589, 1070
TaaI ACNGT 3 cut(s) 118, 123, 449
TaiI ACGT 3 cut(s) 831, 928, 1050
TaqI TCGA 5 cut(s) 195, 802, 810, 836, 932
TaqII GACCGA 1 cut(s) 404
TasI AATT 5 cut(s) 296, 714, 806, 855, 1130
Tru1I TTAA 3 cut(s) 785, 977, 1115
Tru9I TTAA 3 cut(s) 785, 977, 1115
TscAI CASTG 3 cut(s) 153, 454, 1099
TseFI GTSAC 3 cut(s) 150, 385, 844
TseI GCWGC 2 cut(s) 1013, 1139
Tsp45I GTSAC 3 cut(s) 150, 385, 844
TspDTI ATGAA 7 cut(s) 365, 413, 714, 749, 1100, 1263, 1268
TspGWI ACGGA 1 cut(s) 581
TspRI CASTG 3 cut(s) 153, 454, 1099
Van91I CCANNNNNTGG 1 cut(s) 1181
XagI CCTNNNNNAGG 1 cut(s) 884
XapI RAATTY 1 cut(s) 1130
XceI RCATGY 1 cut(s) 466
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 3 cut(s) 51, 1017, 1238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.