Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001250

Physical Location & Seq

Genomic Coordinates Reverse (-)

11702705 .. 11711938

Gene Structure 9234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022757

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTCTTTCACCTACAACAATGAATCCTCCACACCTAAAAATGTAGATACTATTGCCTATCTTCAAAGTAGTAACACTCAAAGTAGTCAGGACCTGTATGTCCTACTACTTGAAGGAATGAAAAAAATAGTTTCTGCTGCAACATCAGAACTCAAACATATGCAAGCAAAACCAATTCCAGCTCTACCTCTCTCAATCAAACGTGAAGAAGAGGACGAGGTTATCCCCATAAATAGTGAGAAGGATTTAGAAAGACTACTCAACTATAACCAACCAAAGGTTGCGACGCTGCTCATGGGAGAAATTGAGGTCTCTTTTCATTTACCTAAAGATCTTGCACTGCATGAGTTAGATCTTGAGAAGTTGCAGCCCTTAGAAGGTACAAGTACCAATACTTCGAGCATTCGACAATTTACTATCTCGGAGAGGCTTGCTGGATGGAAGATTAAACGTTATATAAGAGTTAAAAACCCAAAGCAGCGTGACACGTATTTTCGTCACCATCAATCAAGGGCGAAGTTCCGATCAGTGGTTGAGGTGGCGAATTTTATACTTTACGAGCTCGACCTCCACTCCAATTGGGAATTGCAACTCTCAACCCTCGGTATTACAACACTGGACTCTAGGTATGGCAACTCCGCTCAATCTGCGGCAGTTGGATCCGAGACCCAAATCAAAATCGAAGTTGGAATTCATGGTTTCTCTGATAAATCACTTGGTAGAAGGATTGCTCCTTCCAATCTTTACACTCACGAGACGTGGCTGCTCAAGGAAGCTATAAACCTCTACATTTCACTCAGAGCTCAGAACATTGCTCTTGACAATCTTCTGCTTCTCTTTGTTGCCAAGGCTTGTGCGGTTTTGGGTAATCTCAGAAAAGCAACAGAGCTTCACGATGAGGCAATTCGGTTCGGGTTTCATTTGGATATTGCTTTGGGCAATGCCATGGTTGAAATGTTTGGGAAGTGTATGTTGATGGGGCATGGCGGGGTTTCCATGAAATGCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

337

Amino Acids

37.9

Weight (kDa)

7.76

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02611 FvH4_4g02612 FvH4_5g14730 FvH4_5g20350 FvH4_6g23221
malus_domestica	MD12G1142400.v1.1
prunus_persica	Prupe.6G255700_v2.0.a1
pyrus_communis	pycom12g13720
rosa_laevigata	RLG00000009914 RLG00000009922 RLG00000009923 RLG00000022757 RLG00000023405 RLG00000023428
rosa_multiflora	Rmu_sc0001380.1_g000014 Rmu_sc0006160.1_g000004 Rmu_sc0007142.1_g000001 Rmu_sc0038645.1_g000001
rosa_roxburghii	Rroxscaffold_5G00336460 Rroxscaffold_5G00336470 Rroxscaffold_5G00336560 Rroxscaffold_6G00392190 Rroxscaffold_6G00400500
rosa_rugosa	Rorug03G0191200 Rorug03G0330500 Rorug03G0330600
rosa_samantha	Rh2AG375900 Rh2CG353800 Rh3AG242100 Rh3AG305100 Rh3BG275700 Rh3BG277200 Rh3BG318200 Rh3CG338600 Rh3DG269100 Rh3DG340600 Rh4AG032000 Rh4AG032100 Rh4AG032700 Rh4AG181000 Rh4BG026100 Rh4BG026200 Rh4BG180200 Rh4CG035100 Rh4CG035200 Rh4CG035600 Rh4CG036600 Rh4CG192100 Rh4DG027700 Rh4DG027800 Rh4DG028400 Rh4DG176300
rosa_wichuraiana	Rw0G002680 Rw3G021640 Rw4G015120 Rw6G029820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	98
AccBSI	CCGCTC	1 cut(s)	641
AciI	CCGC	4 cut(s)	639, 650, 857, 987
AclI	AACGTT	1 cut(s)	451
AclWI	GGATC	2 cut(s)	654, 667
AcsI	RAATTY	2 cut(s)	544, 690
AfaI	GTAC	2 cut(s)	382, 388
AfiI	CCNNNNNNNGG	3 cut(s)	277, 377, 529
AflIII	ACRYGT	1 cut(s)	486
AgsI	TTSAA	3 cut(s)	65, 113, 953
AjiI	CACGTC	1 cut(s)	759
AluBI	AGCT	5 cut(s)	182, 562, 776, 803, 889
AluI	AGCT	5 cut(s)	182, 562, 776, 803, 889
Alw21I	GWGCWC	2 cut(s)	564, 805
Alw26I	GTCTC	3 cut(s)	316, 659, 749
AlwI	GGATC	2 cut(s)	654, 667
AlwNI	CAGNNNCTG	1 cut(s)	94
ApeKI	GCWGC	5 cut(s)	137, 289, 367, 478, 763
ApoI	RAATTY	2 cut(s)	544, 690
AspS9I	GGNCC	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	491
AvaII	GGWCC	1 cut(s)	91
BamHI	GGATCC	1 cut(s)	659
BanII	GRGCYC	2 cut(s)	564, 805
BarI	GAAGNNNNNNTAC	2 cut(s)	379, 411
BauI	CACGAG	1 cut(s)	752
Bbv12I	GWGCWC	2 cut(s)	564, 805
BbvI	GCAGC	5 cut(s)	124, 276, 379, 490, 750
BccI	CCATC	3 cut(s)	432, 510, 970
BcoDI	GTCTC	3 cut(s)	316, 659, 749
BfaI	CTAG	1 cut(s)	624
BglII	AGATCT	2 cut(s)	331, 352
BisI	GCNGC	6 cut(s)	138, 290, 368, 479, 651, 764
BlsI	GCNGC	6 cut(s)	139, 291, 369, 480, 652, 765
Bme18I	GGWCC	1 cut(s)	91
BmgBI	CACGTC	1 cut(s)	759
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	661
BpuEI	CTTGAG	2 cut(s)	377, 752
BsaAI	YACGTR	1 cut(s)	489
BsaI	GGTCTC	2 cut(s)	316, 659
BsaJI	CCNNGG	3 cut(s)	601, 846, 945
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bsc4I	CCNNNNNNNGG	3 cut(s)	277, 377, 529
Bse118I	RCCGGY	1 cut(s)	1005
Bse1I	ACTGG	1 cut(s)	621
Bse3DI	GCAATG	2 cut(s)	810, 946
BseDI	CCNNGG	3 cut(s)	601, 846, 945
BseGI	GGATG	1 cut(s)	443
BseLI	CCNNNNNNNGG	3 cut(s)	277, 377, 529
BseMI	GCAATG	2 cut(s)	810, 946
BseMII	CTCAG	3 cut(s)	811, 818, 886
BseNI	ACTGG	1 cut(s)	621
BseXI	GCAGC	5 cut(s)	124, 276, 379, 490, 750
BsiHKAI	GWGCWC	2 cut(s)	564, 805
BsiSI	CCGG	1 cut(s)	1006
BslI	CCNNNNNNNGG	3 cut(s)	277, 377, 529
BsmAI	GTCTC	3 cut(s)	316, 659, 749
BsmBI	CGTCTC	1 cut(s)	749
BsmI	GAATGC	1 cut(s)	402
Bso31I	GGTCTC	2 cut(s)	316, 659
Bsp1286I	GDGCHC	2 cut(s)	564, 805
Bsp143I	GATC	4 cut(s)	331, 352, 524, 659
Bsp19I	CCATGG	1 cut(s)	945
BspACI	CCGC	4 cut(s)	639, 650, 857, 987
BspCNI	CTCAG	3 cut(s)	810, 817, 885
BspLI	GGNNCC	1 cut(s)	661
BspPI	GGATC	2 cut(s)	654, 667
BspTNI	GGTCTC	2 cut(s)	316, 659
BsrBI	CCGCTC	1 cut(s)	641
BsrDI	GCAATG	2 cut(s)	810, 946
BsrFI	RCCGGY	1 cut(s)	1005
BsrI	ACTGG	1 cut(s)	621
BssAI	RCCGGY	1 cut(s)	1005
BssECI	CCNNGG	3 cut(s)	601, 846, 945
BssMI	GATC	4 cut(s)	331, 352, 524, 659
BssSI	CACGAG	1 cut(s)	752
BssT1I	CCWWGG	2 cut(s)	846, 945
Bst2BI	CACGAG	1 cut(s)	752
Bst6I	CTCTTC	1 cut(s)	204
BstBAI	YACGTR	1 cut(s)	489
BstC8I	GCNNGC	2 cut(s)	165, 432
BstDEI	CTNAG	4 cut(s)	373, 797, 804, 872
BstDSI	CCRYGG	1 cut(s)	945
BstF5I	GGATG	1 cut(s)	443
BstKTI	GATC	4 cut(s)	334, 355, 527, 662
BstMAI	GTCTC	3 cut(s)	316, 659, 749
BstMBI	GATC	4 cut(s)	331, 352, 524, 659
BstMWI	GCNNNNNNNGC	1 cut(s)	647
BstV1I	GCAGC	5 cut(s)	124, 276, 379, 490, 750
BstX2I	RGATCY	3 cut(s)	331, 352, 659
BstYI	RGATCY	3 cut(s)	331, 352, 659
BtgI	CCRYGG	1 cut(s)	945
BtrI	CACGTC	1 cut(s)	759
BtsCI	GGATG	1 cut(s)	443
BtsI	GCAGTG	1 cut(s)	338
BtsIMutI	CAGTG	3 cut(s)	338, 534, 614
Cac8I	GCNNGC	2 cut(s)	165, 432
CaiI	CAGNNNCTG	1 cut(s)	94
Cfr10I	RCCGGY	1 cut(s)	1005
Cfr13I	GGNCC	1 cut(s)	91
CseI	GACGC	1 cut(s)	295
Csp6I	GTAC	2 cut(s)	381, 387
CspCI	CAANNNNNGTGG	2 cut(s)	560, 595
CviAII	CATG	6 cut(s)	295, 344, 695, 946, 983, 997
CviJI	RGCY	9 cut(s)	182, 370, 430, 562, 763, 776, 803, 851, 889
CviKI_1	RGCY	9 cut(s)	182, 370, 430, 562, 763, 776, 803, 851, 889
CviQI	GTAC	2 cut(s)	381, 387
DdeI	CTNAG	4 cut(s)	373, 797, 804, 872
DpnI	GATC	4 cut(s)	333, 354, 526, 661
DpnII	GATC	4 cut(s)	331, 352, 524, 659
DrdI	GACNNNNNNGTC	1 cut(s)	98
DseDI	GACNNNNNNGTC	1 cut(s)	98
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Ecl136II	GAGCTC	2 cut(s)	562, 803
Eco130I	CCWWGG	2 cut(s)	846, 945
Eco24I	GRGCYC	2 cut(s)	564, 805
Eco31I	GGTCTC	2 cut(s)	316, 659
Eco47I	GGWCC	1 cut(s)	91
Eco53kI	GAGCTC	2 cut(s)	562, 803
EcoICRI	GAGCTC	2 cut(s)	562, 803
EcoO109I	RGGNCCY	1 cut(s)	91
EcoRI	GAATTC	1 cut(s)	690
EcoT14I	CCWWGG	2 cut(s)	846, 945
EcoT38I	GRGCYC	2 cut(s)	564, 805
ErhI	CCWWGG	2 cut(s)	846, 945
Esp3I	CGTCTC	1 cut(s)	749
FaeI	CATG	6 cut(s)	298, 347, 698, 949, 986, 1000
FatI	CATG	6 cut(s)	294, 343, 694, 945, 982, 996
FauI	CCCGC	1 cut(s)	980
FauNDI	CATATG	1 cut(s)	159
Fnu4HI	GCNGC	6 cut(s)	138, 290, 368, 479, 651, 764
FokI	GGATG	1 cut(s)	450
FriOI	GRGCYC	2 cut(s)	564, 805
Fsp4HI	GCNGC	6 cut(s)	138, 290, 368, 479, 651, 764
FspBI	CTAG	1 cut(s)	624
GluI	GCNGC	6 cut(s)	138, 290, 368, 479, 651, 764
HapII	CCGG	1 cut(s)	1006
HgaI	GACGC	1 cut(s)	295
Hin1II	CATG	6 cut(s)	298, 347, 698, 949, 986, 1000
HinfI	GANTC	2 cut(s)	23, 620
HpaII	CCGG	1 cut(s)	1006
HphI	GGTGA	1 cut(s)	491
Hpy188I	TCNGA	8 cut(s)	148, 424, 524, 664, 706, 800, 807, 875
Hpy188III	TCNNGA	5 cut(s)	89, 356, 752, 818, 893
Hpy99I	CGWCG	1 cut(s)	289
HpyAV	CCTTC	5 cut(s)	107, 235, 371, 717, 744
HpyCH4IV	ACGT	4 cut(s)	202, 451, 488, 758
HpyCH4V	TGCA	6 cut(s)	140, 163, 338, 343, 367, 589
HpyF10VI	GCNNNNNNNGC	1 cut(s)	647
HpyF3I	CTNAG	4 cut(s)	373, 797, 804, 872
HpySE526I	ACGT	4 cut(s)	202, 451, 488, 758
Hsp92II	CATG	6 cut(s)	298, 347, 698, 949, 986, 1000
Kzo9I	GATC	4 cut(s)	331, 352, 524, 659
LmnI	GCTCC	1 cut(s)	736
LpnPI	CCDG	5 cut(s)	74, 107, 192, 420, 602
Lsp1109I	GCAGC	5 cut(s)	124, 276, 379, 490, 750
MaeI	CTAG	1 cut(s)	624
MaeII	ACGT	4 cut(s)	202, 451, 488, 758
MaeIII	GTNAC	3 cut(s)	71, 482, 497
MalI	GATC	4 cut(s)	333, 354, 526, 661
MbiI	CCGCTC	1 cut(s)	641
MboI	GATC	4 cut(s)	331, 352, 524, 659
MboII	GAAGA	5 cut(s)	53, 218, 221, 454, 818
MfeI	CAATTG	1 cut(s)	577
MflI	RGATCY	3 cut(s)	331, 352, 659
MhlI	GDGCHC	2 cut(s)	564, 805
MluCI	AATT	8 cut(s)	174, 303, 410, 544, 577, 584, 690, 903
MlyI	GAGTC	1 cut(s)	614
MmeI	TCCRAC	2 cut(s)	637, 667
MseI	TTAA	2 cut(s)	447, 465
MspI	CCGG	1 cut(s)	1006
MunI	CAATTG	1 cut(s)	577
Mva1269I	GAATGC	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	647
NcoI	CCATGG	1 cut(s)	945
NdeI	CATATG	1 cut(s)	159
NdeII	GATC	4 cut(s)	331, 352, 524, 659
NlaIII	CATG	6 cut(s)	298, 347, 698, 949, 986, 1000
NlaIV	GGNNCC	1 cut(s)	661
NmuCI	GTSAC	2 cut(s)	482, 497
PctI	GAATGC	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	6 cut(s)	139, 291, 369, 480, 652, 765
PleI	GAGTC	1 cut(s)	614
PpsI	GAGTC	1 cut(s)	614
Ppu21I	YACGTR	1 cut(s)	489
PpuMI	RGGWCCY	1 cut(s)	91
Psp124BI	GAGCTC	2 cut(s)	564, 805
Psp1406I	AACGTT	1 cut(s)	451
Psp5II	RGGWCCY	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	661
PspPI	GGNCC	1 cut(s)	91
PspPPI	RGGWCCY	1 cut(s)	91
PstNI	CAGNNNCTG	1 cut(s)	94
PsuI	RGATCY	3 cut(s)	331, 352, 659
RsaI	GTAC	2 cut(s)	382, 388
RsaNI	GTAC	2 cut(s)	381, 387
SacI	GAGCTC	2 cut(s)	564, 805
SaqAI	TTAA	2 cut(s)	447, 465
SatI	GCNGC	6 cut(s)	138, 290, 368, 479, 651, 764
Sau3AI	GATC	4 cut(s)	331, 352, 524, 659
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	614
SduI	GDGCHC	2 cut(s)	564, 805
SinI	GGWCC	1 cut(s)	91
SmlI	CTYRAG	2 cut(s)	356, 767
SmoI	CTYRAG	2 cut(s)	356, 767
Sse9I	AATT	8 cut(s)	174, 303, 410, 544, 577, 584, 690, 903
SsiI	CCGC	4 cut(s)	639, 650, 857, 987
SspMI	CTAG	1 cut(s)	624
SstI	GAGCTC	2 cut(s)	564, 805
StyI	CCWWGG	2 cut(s)	846, 945
TaiI	ACGT	4 cut(s)	205, 454, 491, 761
TaqI	TCGA	4 cut(s)	398, 406, 564, 681
TasI	AATT	8 cut(s)	174, 303, 410, 544, 577, 584, 690, 903
TauI	GCSGC	1 cut(s)	653
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	2 cut(s)	447, 465
Tru9I	TTAA	2 cut(s)	447, 465
TscAI	CASTG	3 cut(s)	345, 534, 621
TseFI	GTSAC	2 cut(s)	482, 497
TseI	GCWGC	5 cut(s)	137, 289, 367, 478, 763
Tsp45I	GTSAC	2 cut(s)	482, 497
TspDTI	ATGAA	5 cut(s)	36, 134, 308, 683, 908
TspRI	CASTG	3 cut(s)	345, 534, 621
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	2 cut(s)	544, 690
XspI	CTAG	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.