RLG00000023428

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
23468713 .. 23470881
2169 bp
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UTR
Exon/CDS
Intron
RLM00000023428

Sequence Viewer

Length: 474 bp
ATGTCTACACTCTCTAGTGCAAATGACTTGCAGTCTCAACTCTATGGAATCCTGAAAAAATTGGTGGTGTTGGAAGAAAAATATAGAGCTAGGCAACCAAAATGTGCGACGATTCCCTTTGGAGAAATGTCAATTTCATTCCAACTTCCAGCAGATTTTCCTCTTCATCAGATAGACGTGGAAAAGTTGGTGCCCCCAGAGAGGGAGACTACTAGTACAAATAGGAGCATGCGTCAATTTTCTTTCTTTGAAAGGCTGAAAGGGTGGAAAATCGCGGTCAGGCGAAGAAAAAATAATCCGACGTTCGACTCGTATTTTCACCACGAGAAACTAAAGAAAGTTTTGCGTTCGTATATGGAGGTGGCCGTGCAATCGGAAAGAAAAAGACAACATCTATGCCGAAGGAAGAATCTACTACCAAAAGAATCAAGGCGAGATGAAAGAAAGTGCACAACTTTGAGCCGCCACCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

158

Amino Acids

18.68

Weight (kDa)

10.22

Isoelectric Point (pI)

70.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 190
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 275
AciI CCGC 2 cut(s) 275, 463
AcoI YGGCCR 1 cut(s) 363
AfaI GTAC 1 cut(s) 217
AfiI CCNNNNNNNGG 2 cut(s) 201, 202
AgsI TTSAA 1 cut(s) 251
AhdI GACNNNNNGTC 1 cut(s) 31
AhlI ACTAGT 1 cut(s) 212
AjiI CACGTC 1 cut(s) 178
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
Alw21I GWGCWC 1 cut(s) 452
Alw26I GTCTC 2 cut(s) 39, 200
Alw44I GTGCAC 1 cut(s) 448
AoxI GGCC 1 cut(s) 363
ApaLI GTGCAC 1 cut(s) 448
AsuHPI GGTGA 1 cut(s) 311
BaeGI GKGCMC 2 cut(s) 195, 452
BanI GGYRCC 1 cut(s) 190
BauI CACGAG 1 cut(s) 323
Bbv12I GWGCWC 1 cut(s) 452
BceAI ACGGC 1 cut(s) 350
BcoDI GTCTC 2 cut(s) 39, 200
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 3 cut(s) 15, 90, 213
BisI GCNGC 1 cut(s) 463
BlsI GCNGC 1 cut(s) 464
BmeRI GACNNNNNGTC 1 cut(s) 31
BmgBI CACGTC 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 192
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 202
BseLI CCNNNNNNNGG 2 cut(s) 201, 202
BseSI GKGCMC 2 cut(s) 195, 452
Bsh1236I CGCG 1 cut(s) 275
BshFI GGCC 1 cut(s) 365
BshNI GGYRCC 1 cut(s) 190
BsiHKAI GWGCWC 1 cut(s) 452
BslI CCNNNNNNNGG 2 cut(s) 201, 202
BsmAI GTCTC 2 cut(s) 39, 200
BsnI GGCC 1 cut(s) 365
Bsp1286I GDGCHC 2 cut(s) 195, 452
BspACI CCGC 2 cut(s) 275, 463
BspANI GGCC 1 cut(s) 365
BspFNI CGCG 1 cut(s) 275
BspLI GGNNCC 1 cut(s) 192
BspT107I GGYRCC 1 cut(s) 190
BssSI CACGAG 1 cut(s) 323
Bst2BI CACGAG 1 cut(s) 323
Bst6I CTCTTC 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 230
BstFNI CGCG 1 cut(s) 275
BstMAI GTCTC 2 cut(s) 39, 200
BstNSI RCATGY 1 cut(s) 232
BstSLI GKGCMC 2 cut(s) 195, 452
BstUI CGCG 1 cut(s) 275
BsuRI GGCC 1 cut(s) 365
BtrI CACGTC 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 230
CseI GACGC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 216
CviAII CATG 1 cut(s) 229
CviJI RGCY 4 cut(s) 89, 256, 365, 462
CviKI_1 RGCY 4 cut(s) 89, 256, 365, 462
CviQI GTAC 1 cut(s) 216
DriI GACNNNNNGTC 1 cut(s) 31
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 168
Eam1105I GACNNNNNGTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 168
FaeI CATG 1 cut(s) 232
FaiI YATR 6 cut(s) 45, 84, 230, 354, 356, 397
FatI CATG 1 cut(s) 228
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 463
Fsp4HI GCNGC 1 cut(s) 463
FspBI CTAG 3 cut(s) 15, 90, 213
GluI GCNGC 1 cut(s) 463
HaeIII GGCC 1 cut(s) 365
HgaI GACGC 1 cut(s) 221
Hin1II CATG 1 cut(s) 232
HinfI GANTC 5 cut(s) 48, 112, 308, 409, 425
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 2 cut(s) 6, 450
Hpy188I TCNGA 3 cut(s) 171, 300, 376
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 2 cut(s) 6, 450
Hpy99I CGWCG 2 cut(s) 112, 304
HpyAV CCTTC 1 cut(s) 396
HpyCH4IV ACGT 2 cut(s) 177, 302
HpyCH4V TGCA 4 cut(s) 20, 31, 370, 450
HpySE526I ACGT 2 cut(s) 177, 302
Hsp92II CATG 1 cut(s) 232
LmnI GCTCC 1 cut(s) 225
LpnPI CCDG 4 cut(s) 65, 162, 210, 265
MaeI CTAG 3 cut(s) 15, 90, 213
MaeII ACGT 2 cut(s) 177, 302
MboII GAAGA 4 cut(s) 86, 155, 297, 418
MhlI GDGCHC 2 cut(s) 195, 452
MluCI AATT 3 cut(s) 59, 132, 236
MlyI GAGTC 1 cut(s) 302
MmeI TCCRAC 3 cut(s) 51, 166, 323
MnlI CCTC 3 cut(s) 171, 195, 352
MvnI CGCG 1 cut(s) 275
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 1 cut(s) 192
NspI RCATGY 1 cut(s) 232
PaeI GCATGC 1 cut(s) 232
PcsI WCGNNNNNNNCGW 1 cut(s) 308
PfeI GAWTC 4 cut(s) 48, 112, 409, 425
PkrI GCNGC 1 cut(s) 464
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 192
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
SatI GCNGC 1 cut(s) 463
SchI GAGTC 1 cut(s) 302
SduI GDGCHC 2 cut(s) 195, 452
SetI ASST 4 cut(s) 91, 180, 305, 363
SpeI ACTAGT 1 cut(s) 212
SphI GCATGC 1 cut(s) 232
Sse9I AATT 3 cut(s) 59, 132, 236
SsiI CCGC 2 cut(s) 275, 463
SspMI CTAG 3 cut(s) 15, 90, 213
TaiI ACGT 2 cut(s) 180, 305
TaqI TCGA 1 cut(s) 306
TasI AATT 3 cut(s) 59, 132, 236
TatI WGTACW 1 cut(s) 215
TauI GCSGC 1 cut(s) 465
TfiI GAWTC 4 cut(s) 48, 112, 409, 425
TspDTI ATGAA 3 cut(s) 126, 155, 453
VneI GTGCAC 1 cut(s) 448
XceI RCATGY 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 3 cut(s) 15, 90, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.