Rh4CG035600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001250
Physical Location & Seq
Reverse (-)
7266734 .. 7267066
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG035600.1

Sequence Viewer

Length: 213 bp
ATGAGGAAAGCCAACAGCAAACGTAAATCGATAGATTTTTGGGAGCCAGCTAATGAGAGCCCTAAAAATATATTAAAGGATGAATACCCAAGTATGTCATCTGAAGGCGCTGCTAGTGATTTTGAAGAAGAGGAGGAGTCGTACTTGCAGATGTTTCTTTGCGTGGCCTGGAGTAACCTGATGAACGGCACTGCAGAGGAGGTGCTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

8.02

Weight (kDa)

4.38

Isoelectric Point (pI)

74.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 1 cut(s) 143
AgsI TTSAA 1 cut(s) 125
AjnI CCWGG 1 cut(s) 167
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 1 cut(s) 110
AspLEI GCGC 1 cut(s) 110
BanII GRGCYC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 97
BceAI ACGGC 1 cut(s) 202
BciT130I CCWGG 1 cut(s) 169
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 192
BfoI RGCGCY 1 cut(s) 111
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 169
BpmI CTGGAG 1 cut(s) 190
Bsa29I ATCGAT 1 cut(s) 29
BsaXI ACNNNNNCTCC 3 cut(s) 125, 155, 191
BseBI CCWGG 1 cut(s) 169
BseCI ATCGAT 1 cut(s) 29
BseGI GGATG 1 cut(s) 85
BseRI GAGGAG 3 cut(s) 146, 149, 212
BseXI GCAGC 1 cut(s) 97
BshFI GGCC 1 cut(s) 167
BshVI ATCGAT 1 cut(s) 29
BsnI GGCC 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 62
BspANI GGCC 1 cut(s) 167
BspDI ATCGAT 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 48
BstF5I GGATG 1 cut(s) 85
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 97
Bsu15I ATCGAT 1 cut(s) 29
BsuRI GGCC 1 cut(s) 167
BsuTUI ATCGAT 1 cut(s) 29
BtsCI GGATG 1 cut(s) 85
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 48
CfoI GCGC 1 cut(s) 110
ClaI ATCGAT 1 cut(s) 29
Csp6I GTAC 1 cut(s) 142
CviJI RGCY 5 cut(s) 11, 46, 50, 60, 167
CviKI_1 RGCY 5 cut(s) 11, 46, 50, 60, 167
CviQI GTAC 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 62
FaiI YATR 2 cut(s) 71, 95
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 92
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 114
GlaI GCGC 1 cut(s) 109
GluI GCNGC 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 190
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 1 cut(s) 167
HhaI GCGC 1 cut(s) 110
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HinfI GANTC 1 cut(s) 137
Hpy188I TCNGA 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 2 cut(s) 148, 194
HpySE526I ACGT 1 cut(s) 22
HspAI GCGC 1 cut(s) 108
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 4 cut(s) 60, 154, 181, 191
Lsp1109I GCAGC 1 cut(s) 97
MaeI CTAG 1 cut(s) 114
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 1 cut(s) 173
MboII GAAGA 2 cut(s) 137, 140
MhlI GDGCHC 1 cut(s) 62
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 4 cut(s) 124, 127, 190, 193
MseI TTAA 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 169
MvaI CCWGG 1 cut(s) 169
NlaIV GGNNCC 1 cut(s) 45
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
Psp6I CCWGG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 45
PstI CTGCAG 1 cut(s) 196
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 1 cut(s) 111
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 169
SduI GDGCHC 1 cut(s) 62
SetI ASST 4 cut(s) 25, 52, 180, 204
SfcI CTRYAG 1 cut(s) 192
SgeI CNNG 8 cut(s) 59, 102, 126, 157, 175, 180, 181, 190
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 167
TaiI ACGT 1 cut(s) 25
TaqI TCGA 1 cut(s) 29
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 1 cut(s) 196
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 96, 197
TspRI CASTG 1 cut(s) 196
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.