RLG00000009914

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001250
Physical Location & Seq
Reverse (-)
60098950 .. 60101096
2147 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009914

Sequence Viewer

Length: 1296 bp
ATGTCATCACCAAGGTCCTCCTTCTCTTCAGCATGCCTATCGCCATCATCGACCTGTAGCACTTCACCTTCATCCTCGGCTACAACTGCACTGTTTTCCTCACCACCCACGTTTGACACGGTACTGTCGTCATCCTCATGCGAGTCGGTAGTGTCACCACCACCCCAATTTGTAGCACCAGTTTCACCGACGCCGTTCGATTTAGATCAGATCATGGGCGACTTTCCACGGGCGCAAATGGTGGACTACCATGAGATACAAAGACGCCAAGTGGTCTCTCCATCTCCTCCTTCAAAGGAATTGGTTCTTTATAAGCCAGAGACACAGCGTCAAGAAAACCTGCAGGAACGACTTGGAGAAGTCGTCAAGGATGCTGTTTATAAAGAGGTGACTAAGTTGATGAAACAAGCAGAGGCAGAGATAGCGAAGGAACAAAAGGCTGAGCACGAAAGTGGCAGAACTAGCATGGAAGAGGCCTCTGTATTTACGAGGGAAGAAGGTAAACTGATGATAGTAGTGGCAGAGCAGGCTGAGGCTAACCATGAGAGCCCTAAAATAACCAACACGGAACCGGCTGTCACTACAAGGCCAGGCCGATCGGCCACCAAGCAAGTGGCGCATATTTCCAATGTGTCTTTTCAAATTCCTGATGATTTCGAAGTTGACGATCACACACTAAACAGATTTGTGCCTAATGATGAAGTCCTCAGGGAAATTACTGCTCAGAGTAGGAAAAAATATAATTTCTCTGACAGACTCCATGGATGGAAAATGGAGTGTAGAATAAGACAGAACGGCGTTCGACAATTTGACAAGTATTTTACGCATGTACAATCAAAGGTTGTGACTAGATCAATTCCAGAGGTCGTAAGGTTTATCCTTTATGAGGTAACCCCTAAACAAATGAGGGAAGCCAACAGCAAACGCAAATTGGTAGATTTCTTGGAAGCAGCTGATGAGAGCCCTCAAAATATGTTAAAGGATGAATACTCAAGCATGTCATCTGAAGGCGCTGCCGGTGATTCTGAAGAAGAGGGGGAGTCGTACGAGGAGATGTTTTTTCGCGTAGCCTGGAGTAACCAGATAAACGGCACTAGAGAGGTAGTGCCGTTATTAAGCGAATGGGAAAAATTCAAGGCTGCGAAAAAGAAGGCTAGAACAACACCATGTAAACCAGAAGTTGGTACACCCAACTTGGATGCTGAAGCTATGGAGACAGCAAACGCCTTGATGGGACTAGCTGAGAATGAAAGTTCGGTGAGGAGAAGGCCGAAGGCTTGTAATGATAGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook

Protein Analysis

432

Amino Acids

48.41

Weight (kDa)

5.55

Isoelectric Point (pI)

60.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 312, 381
Acc36I ACCTGC 1 cut(s) 348
AccB7I CCANNNNNTGG 1 cut(s) 1181
AccII CGCG 1 cut(s) 1065
AcoI YGGCCR 1 cut(s) 600
AcsI RAATTY 2 cut(s) 642, 1130
AcuI CTGAAG 4 cut(s) 12, 1026, 1047, 1224
AcyI GRCGYC 2 cut(s) 191, 265
AfaI GTAC 4 cut(s) 123, 831, 1046, 1186
AfiI CCNNNNNNNGG 2 cut(s) 886, 1181
AgsI TTSAA 3 cut(s) 294, 641, 1135
AhdI GACNNNNNGTC 1 cut(s) 327
AjnI CCWGG 2 cut(s) 589, 1070
AleI CACNNNNGTG 1 cut(s) 450
AluBI AGCT 3 cut(s) 953, 1208, 1241
AluI AGCT 3 cut(s) 953, 1208, 1241
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 3 cut(s) 280, 314, 1208
AoxI GGCC 5 cut(s) 474, 587, 592, 600, 1268
ApeKI GCWGC 3 cut(s) 950, 1013, 1139
ApoI RAATTY 2 cut(s) 642, 1130
Asp700I GAANNNNTTC 1 cut(s) 303
AspLEI GCGC 3 cut(s) 235, 619, 1013
AspS9I GGNCC 1 cut(s) 15
AsuHPI GGTGA 7 cut(s) 57, 93, 147, 177, 400, 1031, 1270
AsuII TTCGAA 1 cut(s) 657
AvaII GGWCC 1 cut(s) 15
AxyI CCTNAGG 1 cut(s) 707
BaeI ACNNNNGTAYC 2 cut(s) 113, 146
BanII GRGCYC 2 cut(s) 551, 965
Bbv12I GWGCWC 1 cut(s) 447
BbvCI CCTCAGC 1 cut(s) 531
BbvI GCAGC 3 cut(s) 962, 1000, 1126
BccI CCATC 4 cut(s) 52, 289, 759, 1225
BceAI ACGGC 4 cut(s) 178, 811, 1093, 1105
BcgI CGANNNNNNTGC 2 cut(s) 21, 55
BciT130I CCWGG 2 cut(s) 591, 1072
BcoDI GTCTC 3 cut(s) 280, 314, 1208
BfaI CTAG 5 cut(s) 462, 849, 1095, 1155, 1238
BfmI CTRYAG 2 cut(s) 55, 341
BfoI RGCGCY 1 cut(s) 1014
BfuAI ACCTGC 1 cut(s) 348
BisI GCNGC 3 cut(s) 951, 1014, 1140
BlpI GCTNAGC 1 cut(s) 441
BlsI GCNGC 3 cut(s) 952, 1015, 1141
Bme1390I CCNGG 2 cut(s) 591, 1072
Bme18I GGWCC 1 cut(s) 15
BmeRI GACNNNNNGTC 1 cut(s) 327
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 570
BmrFI CCNGG 2 cut(s) 591, 1072
BmsI GCATC 2 cut(s) 361, 1189
BpmI CTGGAG 1 cut(s) 1093
Bpu10I CCTNAGC 1 cut(s) 531
Bpu1102I GCTNAGC 1 cut(s) 441
Bpu14I TTCGAA 1 cut(s) 657
BpuEI CTTGAG 1 cut(s) 976
BsaBI GATNNNNATC 1 cut(s) 204
BsaHI GRCGYC 2 cut(s) 191, 265
BsaI GGTCTC 1 cut(s) 280
BsaJI CCNNGG 4 cut(s) 11, 75, 227, 760
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 2 cut(s) 886, 1181
Bse118I RCCGGY 2 cut(s) 571, 1016
Bse1I ACTGG 1 cut(s) 179
Bse21I CCTNAGG 1 cut(s) 707
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 2 cut(s) 591, 1072
BseDI CCNNGG 4 cut(s) 11, 75, 227, 760
BseGI GGATG 6 cut(s) 71, 131, 376, 770, 988, 1204
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 2 cut(s) 886, 1181
BseMII CTCAG 5 cut(s) 432, 522, 721, 737, 1233
BseNI ACTGG 1 cut(s) 179
BseRI GAGGAG 3 cut(s) 276, 1064, 1276
BseXI GCAGC 3 cut(s) 962, 1000, 1126
BsgI GTGCAG 1 cut(s) 72
Bsh1236I CGCG 1 cut(s) 1065
Bsh1285I CGRYCG 1 cut(s) 599
BshFI GGCC 5 cut(s) 476, 589, 594, 602, 1270
BsiEI CGRYCG 1 cut(s) 599
BsiHKAI GWGCWC 1 cut(s) 447
BsiSI CCGG 2 cut(s) 572, 1017
BsiWI CGTACG 1 cut(s) 1044
BslFI GGGAC 1 cut(s) 1248
BslI CCNNNNNNNGG 2 cut(s) 886, 1181
BsmAI GTCTC 3 cut(s) 280, 314, 1208
BsmFI GGGAC 1 cut(s) 1248
BsnI GGCC 5 cut(s) 476, 589, 594, 602, 1270
Bso31I GGTCTC 1 cut(s) 280
Bsp119I TTCGAA 1 cut(s) 657
Bsp1286I GDGCHC 3 cut(s) 447, 551, 965
Bsp1407I TGTACA 1 cut(s) 829
Bsp143I GATC 5 cut(s) 205, 210, 596, 667, 851
Bsp1720I GCTNAGC 1 cut(s) 441
Bsp19I CCATGG 1 cut(s) 760
BspANI GGCC 5 cut(s) 476, 589, 594, 602, 1270
BspCNI CTCAG 5 cut(s) 433, 523, 720, 736, 1234
BspFNI CGCG 1 cut(s) 1065
BspLI GGNNCC 1 cut(s) 570
BspMAI CTGCAG 1 cut(s) 345
BspMI ACCTGC 1 cut(s) 348
BspT104I TTCGAA 1 cut(s) 657
BspTNI GGTCTC 1 cut(s) 280
BsrFI RCCGGY 2 cut(s) 571, 1016
BsrGI TGTACA 1 cut(s) 829
BsrI ACTGG 1 cut(s) 179
BssAI RCCGGY 2 cut(s) 571, 1016
BssECI CCNNGG 4 cut(s) 11, 75, 227, 760
BssMI GATC 5 cut(s) 205, 210, 596, 667, 851
BssNI GRCGYC 2 cut(s) 191, 265
BssT1I CCWWGG 2 cut(s) 11, 760
Bst2UI CCWGG 2 cut(s) 591, 1072
Bst4CI ACNGT 3 cut(s) 93, 121, 126
Bst6I CTCTTC 3 cut(s) 31, 465, 1026
BstACI GRCGYC 2 cut(s) 191, 265
BstAUI TGTACA 1 cut(s) 829
BstBI TTCGAA 1 cut(s) 657
BstC8I GCNNGC 2 cut(s) 34, 528
BstDEI CTNAG 6 cut(s) 393, 441, 531, 707, 723, 1242
BstDSI CCRYGG 2 cut(s) 227, 760
BstEII GGTNACC 1 cut(s) 889
BstENI CCTNNNNNAGG 1 cut(s) 884
BstF5I GGATG 6 cut(s) 71, 131, 376, 770, 988, 1204
BstFNI CGCG 1 cut(s) 1065
BstH2I RGCGCY 1 cut(s) 1014
BstHHI GCGC 3 cut(s) 235, 619, 1013
BstKTI GATC 5 cut(s) 208, 213, 599, 670, 854
BstMAI GTCTC 3 cut(s) 280, 314, 1208
BstMBI GATC 5 cut(s) 205, 210, 596, 667, 851
BstMCI CGRYCG 1 cut(s) 599
BstMWI GCNNNNNNNGC 5 cut(s) 86, 422, 462, 527, 616
BstNI CCWGG 2 cut(s) 591, 1072
BstNSI RCATGY 3 cut(s) 36, 830, 1000
BstPI GGTNACC 1 cut(s) 889
BstSCI CCNGG 2 cut(s) 589, 1070
BstSFI CTRYAG 2 cut(s) 55, 341
BstUI CGCG 1 cut(s) 1065
BstV1I GCAGC 3 cut(s) 962, 1000, 1126
BstXI CCANNNNNNTGG 1 cut(s) 613
Bsu36I CCTNAGG 1 cut(s) 707
BsuRI GGCC 5 cut(s) 476, 589, 594, 602, 1270
BtgI CCRYGG 2 cut(s) 227, 760
BtsCI GGATG 6 cut(s) 71, 131, 376, 770, 988, 1204
BtsIMutI CAGTG 1 cut(s) 89
BveI ACCTGC 1 cut(s) 348
Cac8I GCNNGC 2 cut(s) 34, 528
CfoI GCGC 3 cut(s) 235, 619, 1013
Cfr10I RCCGGY 2 cut(s) 571, 1016
Cfr13I GGNCC 1 cut(s) 15
CseI GACGC 3 cut(s) 199, 273, 317
Csp6I GTAC 4 cut(s) 122, 830, 1045, 1185
CviQI GTAC 4 cut(s) 122, 830, 1045, 1185
DdeI CTNAG 6 cut(s) 393, 441, 531, 707, 723, 1242
DpnI GATC 5 cut(s) 207, 212, 598, 669, 853
DpnII GATC 5 cut(s) 205, 210, 596, 667, 851
DriI GACNNNNNGTC 1 cut(s) 327
EaeI YGGCCR 1 cut(s) 600
Eam1104I CTCTTC 3 cut(s) 31, 465, 1026
Eam1105I GACNNNNNGTC 1 cut(s) 327
EarI CTCTTC 3 cut(s) 31, 465, 1026
Eco130I CCWWGG 2 cut(s) 11, 760
Eco147I AGGCCT 1 cut(s) 476
Eco24I GRGCYC 2 cut(s) 551, 965
Eco31I GGTCTC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 15
Eco57I CTGAAG 4 cut(s) 12, 1026, 1047, 1224
Eco81I CCTNAGG 1 cut(s) 707
Eco91I GGTNACC 1 cut(s) 889
EcoNI CCTNNNNNAGG 1 cut(s) 884
EcoO109I RGGNCCY 1 cut(s) 15
EcoO65I GGTNACC 1 cut(s) 889
EcoRII CCWGG 2 cut(s) 589, 1070
EcoT14I CCWWGG 2 cut(s) 11, 760
EcoT38I GRGCYC 2 cut(s) 551, 965
ErhI CCWWGG 2 cut(s) 11, 760
FaqI GGGAC 1 cut(s) 1248
Fnu4HI GCNGC 3 cut(s) 951, 1014, 1140
FokI GGATG 6 cut(s) 58, 118, 383, 777, 995, 1211
FriOI GRGCYC 2 cut(s) 551, 965
Fsp4HI GCNGC 3 cut(s) 951, 1014, 1140
FspBI CTAG 5 cut(s) 462, 849, 1095, 1155, 1238
GlaI GCGC 3 cut(s) 234, 618, 1012
GluI GCNGC 3 cut(s) 951, 1014, 1140
GsuI CTGGAG 1 cut(s) 1093
HaeII RGCGCY 1 cut(s) 1014
HaeIII GGCC 5 cut(s) 476, 589, 594, 602, 1270
HapII CCGG 2 cut(s) 572, 1017
HgaI GACGC 3 cut(s) 199, 273, 317
HhaI GCGC 3 cut(s) 235, 619, 1013
Hin1I GRCGYC 2 cut(s) 191, 265
Hin6I GCGC 3 cut(s) 233, 617, 1011
HinP1I GCGC 3 cut(s) 233, 617, 1011
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HinfI GANTC 4 cut(s) 143, 756, 1022, 1040
HpaII CCGG 2 cut(s) 572, 1017
HphI GGTGA 7 cut(s) 57, 93, 147, 177, 400, 1031, 1270
Hpy166II GTNNAC 5 cut(s) 244, 503, 664, 1172, 1187
Hpy188I TCNGA 5 cut(s) 210, 726, 751, 1006, 1027
Hpy188III TCNNGA 3 cut(s) 332, 647, 860
Hpy8I GTNNAC 5 cut(s) 244, 503, 664, 1172, 1187
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 9 cut(s) 31, 78, 300, 421, 491, 1001, 1144, 1260, 1267
HpyCH4III ACNGT 3 cut(s) 93, 121, 126
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 2 cut(s) 89, 343
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 422, 462, 527, 616
HpyF3I CTNAG 6 cut(s) 393, 441, 531, 707, 723, 1242
HpySE526I ACGT 1 cut(s) 110
Hsp92I GRCGYC 2 cut(s) 191, 265
HspAI GCGC 3 cut(s) 233, 617, 1011
Kzo9I GATC 5 cut(s) 205, 210, 596, 667, 851
Lsp1109I GCAGC 3 cut(s) 962, 1000, 1126
LweI GCATC 2 cut(s) 361, 1189
MaeI CTAG 5 cut(s) 462, 849, 1095, 1155, 1238
MaeII ACGT 1 cut(s) 110
MaeIII GTNAC 6 cut(s) 153, 388, 577, 844, 889, 1076
MalI GATC 5 cut(s) 207, 212, 598, 669, 853
MboI GATC 5 cut(s) 205, 210, 596, 667, 851
MboII GAAGA 5 cut(s) 18, 482, 506, 1040, 1043
MhlI GDGCHC 3 cut(s) 447, 551, 965
MluCI AATT 9 cut(s) 167, 299, 642, 714, 742, 806, 855, 929, 1130
MlyI GAGTC 3 cut(s) 152, 750, 1049
MroXI GAANNNNTTC 1 cut(s) 303
MseI TTAA 2 cut(s) 977, 1115
MslI CAYNNNNRTG 2 cut(s) 136, 450
MspA1I CMGCKG 1 cut(s) 953
MspI CCGG 2 cut(s) 572, 1017
MspR9I CCNGG 2 cut(s) 591, 1072
MvaI CCWGG 2 cut(s) 591, 1072
MvnI CGCG 1 cut(s) 1065
MwoI GCNNNNNNNGC 5 cut(s) 86, 422, 462, 527, 616
NcoI CCATGG 1 cut(s) 760
NdeII GATC 5 cut(s) 205, 210, 596, 667, 851
NlaIV GGNNCC 1 cut(s) 570
NmeAIII GCCGAG 1 cut(s) 56
NmuCI GTSAC 4 cut(s) 153, 388, 577, 844
NspI RCATGY 3 cut(s) 36, 830, 1000
NspV TTCGAA 1 cut(s) 657
OliI CACNNNNGTG 1 cut(s) 450
PaeI GCATGC 1 cut(s) 36
PceI AGGCCT 1 cut(s) 476
PcsI WCGNNNNNNNCGW 3 cut(s) 47, 125, 663
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 1022
Pfl23II CGTACG 1 cut(s) 1044
PflMI CCANNNNNTGG 1 cut(s) 1181
PkrI GCNGC 3 cut(s) 952, 1015, 1141
Ple19I CGATCG 1 cut(s) 599
PleI GAGTC 3 cut(s) 151, 750, 1048
PpsI GAGTC 3 cut(s) 151, 750, 1048
PpuMI RGGWCCY 1 cut(s) 15
PsiI TTATAA 2 cut(s) 312, 381
Psp5II RGGWCCY 1 cut(s) 15
Psp6I CCWGG 2 cut(s) 589, 1070
PspEI GGTNACC 1 cut(s) 889
PspGI CCWGG 2 cut(s) 589, 1070
PspLI CGTACG 1 cut(s) 1044
PspN4I GGNNCC 1 cut(s) 570
PspPI GGNCC 1 cut(s) 15
PspPPI RGGWCCY 1 cut(s) 15
PstI CTGCAG 1 cut(s) 345
PvuI CGATCG 1 cut(s) 599
PvuII CAGCTG 1 cut(s) 953
RsaI GTAC 4 cut(s) 123, 831, 1046, 1186
RsaNI GTAC 4 cut(s) 122, 830, 1045, 1185
RseI CAYNNNNRTG 2 cut(s) 136, 450
SaqAI TTAA 2 cut(s) 977, 1115
SatI GCNGC 3 cut(s) 951, 1014, 1140
Sau3AI GATC 5 cut(s) 205, 210, 596, 667, 851
Sau96I GGNCC 1 cut(s) 15
SbfI CCTGCAGG 1 cut(s) 345
SchI GAGTC 3 cut(s) 152, 750, 1049
ScrFI CCNGG 2 cut(s) 591, 1072
SdaI CCTGCAGG 1 cut(s) 345
SduI GDGCHC 3 cut(s) 447, 551, 965
SfaNI GCATC 2 cut(s) 361, 1189
SfcI CTRYAG 2 cut(s) 55, 341
SfuI TTCGAA 1 cut(s) 657
SinI GGWCC 1 cut(s) 15
SmiMI CAYNNNNRTG 2 cut(s) 136, 450
SmlI CTYRAG 1 cut(s) 991
SmoI CTYRAG 1 cut(s) 991
SphI GCATGC 1 cut(s) 36
Sse8387I CCTGCAGG 1 cut(s) 345
Sse9I AATT 9 cut(s) 167, 299, 642, 714, 742, 806, 855, 929, 1130
SseBI AGGCCT 1 cut(s) 476
SspMI CTAG 5 cut(s) 462, 849, 1095, 1155, 1238
StuI AGGCCT 1 cut(s) 476
StyD4I CCNGG 2 cut(s) 589, 1070
StyI CCWWGG 2 cut(s) 11, 760
TaaI ACNGT 3 cut(s) 93, 121, 126
TaiI ACGT 1 cut(s) 113
TaqI TCGA 4 cut(s) 50, 198, 657, 802
TasI AATT 9 cut(s) 167, 299, 642, 714, 742, 806, 855, 929, 1130
TatI WGTACW 1 cut(s) 829
TfiI GAWTC 1 cut(s) 1022
Tru1I TTAA 2 cut(s) 977, 1115
Tru9I TTAA 2 cut(s) 977, 1115
TscAI CASTG 1 cut(s) 96
TseFI GTSAC 4 cut(s) 153, 388, 577, 844
TseI GCWGC 3 cut(s) 950, 1013, 1139
Tsp45I GTSAC 4 cut(s) 153, 388, 577, 844
TspDTI ATGAA 5 cut(s) 60, 416, 714, 999, 1263
TspGWI ACGGA 1 cut(s) 581
TspRI CASTG 1 cut(s) 96
Van91I CCANNNNNTGG 1 cut(s) 1181
VpaK11BI GGWCC 1 cut(s) 15
XagI CCTNNNNNAGG 1 cut(s) 884
XapI RAATTY 2 cut(s) 642, 1130
XceI RCATGY 3 cut(s) 36, 830, 1000
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XmnI GAANNNNTTC 1 cut(s) 303
XspI CTAG 5 cut(s) 462, 849, 1095, 1155, 1238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.