Rw3G021640

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
26237735 .. 26239936
2202 bp
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UTR
Exon/CDS
Intron
Rw3G021640.1

Sequence Viewer

Length: 513 bp
ATGCACCTGTTTGATGAGTTACATTTGCAACTTCACCAAACGATAAAAAGATTGGTGGTGGAAAAACACGAAGTGAGACAAGCAAGAGTTATGATGTTTCCTGTTGGGGAAACTTCCTTTTCATTCCAACTTCCAGCAGATTTTCCTCTTCATCAGATTGACGTGGAAAAGTTGGTGCCCCCTGAGAGGGAAGTTACTGGTACAAGTGGGTGTATCCGTAAATTTTCATTCTTTGAAAGGCTCAAGGGATGGAATATCGAGGTTAGGCAAAGACAAACTGGACGTGCCCTCGACTCGTATTTCTATCACGAGAAGTCCAACAAAGTTTTGCGATCCGTTATAGAGGTGGTAGGTTTCATCCTCTATGAAGATCCAACGGCTGTGAAATCTGAAAAAAGAAAGGCAGCATCGACTTTGCCAAAGGAAGAATCCAGTAACAAAAGAGTCAACGTGGAGATGAAACAAAGTGAGGATTTCAATATCCAAGATGGCAATGAGTTAACTATATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

170

Amino Acids

19.87

Weight (kDa)

7.03

Isoelectric Point (pI)

63.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 175
AclWI GGATC 2 cut(s) 327, 365
AcsI RAATTY 1 cut(s) 221
AdeI CACNNNGTG 1 cut(s) 73
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 2 cut(s) 186, 187
AgsI TTSAA 2 cut(s) 236, 478
AjiI CACGTC 2 cut(s) 163, 284
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 2 cut(s) 327, 365
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 26
BaeGI GKGCMC 2 cut(s) 180, 289
BanI GGYRCC 1 cut(s) 175
BauI CACGAG 1 cut(s) 308
BbvI GCAGC 1 cut(s) 416
BccI CCATC 2 cut(s) 243, 482
BceAI ACGGC 1 cut(s) 393
BciVI GTATCC 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 70
BfuI GTATCC 1 cut(s) 224
BisI GCNGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 406
BmgBI CACGTC 2 cut(s) 163, 284
BmiI GGNNCC 1 cut(s) 177
BmsI GCATC 1 cut(s) 416
BpuEI CTTGAG 1 cut(s) 227
Bsc4I CCNNNNNNNGG 2 cut(s) 186, 187
Bse1I ACTGG 3 cut(s) 202, 283, 432
Bse3DI GCAATG 1 cut(s) 499
BseGI GGATG 2 cut(s) 254, 357
BseLI CCNNNNNNNGG 2 cut(s) 186, 187
BseMI GCAATG 1 cut(s) 499
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 3 cut(s) 202, 283, 432
BseSI GKGCMC 2 cut(s) 180, 289
BseXI GCAGC 1 cut(s) 416
BshNI GGYRCC 1 cut(s) 175
BslI CCNNNNNNNGG 2 cut(s) 186, 187
BsmAI GTCTC 1 cut(s) 70
Bsp1286I GDGCHC 2 cut(s) 180, 289
Bsp143I GATC 2 cut(s) 332, 370
BspCNI CTCAG 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 177
BspPI GGATC 2 cut(s) 327, 365
BspT107I GGYRCC 1 cut(s) 175
BsrDI GCAATG 1 cut(s) 499
BsrI ACTGG 3 cut(s) 202, 283, 432
BssMI GATC 2 cut(s) 332, 370
BssSI CACGAG 1 cut(s) 308
Bst2BI CACGAG 1 cut(s) 308
Bst6I CTCTTC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 2 cut(s) 254, 357
BstKTI GATC 2 cut(s) 335, 373
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 2 cut(s) 332, 370
BstSLI GKGCMC 2 cut(s) 180, 289
BstV1I GCAGC 1 cut(s) 416
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BsuI GTATCC 1 cut(s) 224
BtrI CACGTC 2 cut(s) 163, 284
BtsCI GGATG 2 cut(s) 254, 357
Csp6I GTAC 1 cut(s) 201
CviJI RGCY 2 cut(s) 241, 380
CviKI_1 RGCY 2 cut(s) 241, 380
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 1 cut(s) 183
DpnI GATC 2 cut(s) 334, 372
DpnII GATC 2 cut(s) 332, 370
DraIII CACNNNGTG 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
FaiI YATR 5 cut(s) 92, 341, 366, 506, 508
Fnu4HI GCNGC 1 cut(s) 405
FokI GGATG 2 cut(s) 261, 344
Fsp4HI GCNGC 1 cut(s) 405
GluI GCNGC 1 cut(s) 405
HincII GTYRAC 2 cut(s) 448, 501
HindII GTYRAC 2 cut(s) 448, 501
HinfI GANTC 3 cut(s) 293, 428, 444
HpaI GTTAAC 1 cut(s) 501
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 2 cut(s) 448, 501
Hpy188I TCNGA 2 cut(s) 156, 391
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 2 cut(s) 448, 501
HpyCH4IV ACGT 3 cut(s) 162, 283, 450
HpyCH4V TGCA 2 cut(s) 4, 28
HpyF3I CTNAG 1 cut(s) 183
HpySE526I ACGT 3 cut(s) 162, 283, 450
KspAI GTTAAC 1 cut(s) 501
Kzo9I GATC 2 cut(s) 332, 370
LpnPI CCDG 7 cut(s) 20, 114, 147, 183, 195, 264, 445
Lsp1109I GCAGC 1 cut(s) 416
LweI GCATC 1 cut(s) 416
MaeII ACGT 3 cut(s) 162, 283, 450
MaeIII GTNAC 3 cut(s) 18, 193, 434
MalI GATC 2 cut(s) 334, 372
MboI GATC 2 cut(s) 332, 370
MboII GAAGA 3 cut(s) 140, 380, 437
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 2 cut(s) 180, 289
MluCI AATT 1 cut(s) 221
MlyI GAGTC 2 cut(s) 287, 453
MmeI TCCRAC 3 cut(s) 151, 342, 398
MnlI CCTC 7 cut(s) 156, 180, 253, 299, 337, 371, 463
MseI TTAA 1 cut(s) 500
NdeII GATC 2 cut(s) 332, 370
NlaIV GGNNCC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 428
PkrI GCNGC 1 cut(s) 406
PleI GAGTC 2 cut(s) 287, 452
PpsI GAGTC 2 cut(s) 287, 452
PspN4I GGNNCC 1 cut(s) 177
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SaqAI TTAA 1 cut(s) 500
SatI GCNGC 1 cut(s) 405
Sau3AI GATC 2 cut(s) 332, 370
SchI GAGTC 2 cut(s) 287, 453
SduI GDGCHC 2 cut(s) 180, 289
SetI ASST 7 cut(s) 9, 165, 264, 286, 348, 355, 453
SfaNI GCATC 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 1 cut(s) 221
TaiI ACGT 3 cut(s) 165, 286, 453
TaqI TCGA 3 cut(s) 258, 291, 410
TasI AATT 1 cut(s) 221
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 1 cut(s) 500
Tru9I TTAA 1 cut(s) 500
TseI GCWGC 1 cut(s) 404
TspDTI ATGAA 6 cut(s) 111, 140, 216, 346, 381, 473
TspGWI ACGGA 2 cut(s) 206, 325
XapI RAATTY 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.