Rh3BG277200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001250
Physical Location & Seq
Forward (+)
27160190 .. 27176168
15979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG277200.1

Sequence Viewer

Length: 894 bp
ATGTCAACAGAGGTGCATGTGCAAAAGAATGGGCCAAGGAATGTGAACAGGAGTAGGCCAAGGAATGTCAACAGAGGTGGGCTAAGGAATGTCAACAGAGGGGAGGTGGCCGGAGCAGTCCGGGTCACGGTGGAGGACGAGGTGGTAGTGGTGGAAAGACGGCGGCTTGTGCAGATTGTTATTGATGGTTGTGCAGATTGTGATCGATGGTTGGCTTTGTTTACGGCGACCCCAGAGGAGTTCTGCTTCAACACACCATCTGCAGCCGCTCCTTTCAACTGCCTTTACTGCGGCTACACCGAACTCACCAACAATGCCACATCCGAGTCCAAGAAGATATTTGAATCAGGAGCAGATCTCCCACAGGAATCAAAGAATGCGGTTCCTATTTCTTATCTTCCCGCAGATGATGAAGGCGAGAAGATAGTAAAAATGTTGGAGGAAAAACACGAAGTGAGACAAGCAAGAGTTATGATGTTTCCTATTGGGGAAACTTCCTTTTCATTCCAACTTCCAGCAGATTTTCCTCTTCATCAGATTGACGTGGAAAAGTTGGTGCCCCCTGAGAGGGAAGTTACTGGTACAAGTGGGTGTATCCGTAAATTTTCATTCTTTGAAAGGCTCAAGGGATGGAATATCGAGGTTAGACAAAGACAAACTGGACGTGCCCTCGACTCGTATTTCTATCACGAGAAGTACAACAAAGTTTTGCGATCCGTTATAGAGGTGGTAGGTTTCATCCTCTATGAAGATCCAACGGCTGTGAAATCTGAAAAGAGAAAGGCAGCATCGACTTTACCAAAGGAAGAATCCAATAACAAAAGAGTCAACGTGGAGATGAAACAAAGTGAGGATTTCAATATCCAAGATGGCAATGAATTAACTATATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook

Protein Analysis

297

Amino Acids

33.79

Weight (kDa)

5.97

Isoelectric Point (pI)

56.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 556
AccBSI CCGCTC 1 cut(s) 269
AciI CCGC 5 cut(s) 163, 267, 291, 380, 402
AclWI GGATC 2 cut(s) 708, 746
AcoI YGGCCR 1 cut(s) 108
AcsI RAATTY 1 cut(s) 602
AdeI CACNNNGTG 1 cut(s) 454
AfaI GTAC 2 cut(s) 583, 698
AfiI CCNNNNNNNGG 3 cut(s) 127, 567, 568
AgsI TTSAA 5 cut(s) 250, 277, 344, 617, 859
AjiI CACGTC 2 cut(s) 544, 665
Alw26I GTCTC 1 cut(s) 451
AlwI GGATC 2 cut(s) 708, 746
AoxI GGCC 3 cut(s) 32, 56, 108
ApeKI GCWGC 2 cut(s) 263, 785
ApoI RAATTY 1 cut(s) 602
AspS9I GGNCC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 298
BaeGI GKGCMC 2 cut(s) 561, 670
BanI GGYRCC 1 cut(s) 556
BauI CACGAG 1 cut(s) 689
BbvI GCAGC 2 cut(s) 275, 797
BccI CCATC 5 cut(s) 179, 201, 265, 624, 863
BceAI ACGGC 3 cut(s) 176, 240, 774
BciVI GTATCC 1 cut(s) 605
BcnI CCSGG 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 451
BfmI CTRYAG 1 cut(s) 261
BfuI GTATCC 1 cut(s) 605
BglII AGATCT 1 cut(s) 355
BisI GCNGC 5 cut(s) 164, 264, 267, 292, 786
BlsI GCNGC 5 cut(s) 165, 265, 268, 293, 787
Bme1390I CCNGG 1 cut(s) 122
BmgBI CACGTC 2 cut(s) 544, 665
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 2 cut(s) 384, 558
BmrFI CCNGG 1 cut(s) 122
BmsI GCATC 1 cut(s) 797
BplI GAGNNNNNCTC 2 cut(s) 342, 374
Bpu10I CCTNAGC 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 1 cut(s) 122
Bsa29I ATCGAT 1 cut(s) 205
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 35, 59
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 567, 568
Bse1I ACTGG 2 cut(s) 583, 664
Bse3DI GCAATG 1 cut(s) 880
Bse8I GATNNNNATC 1 cut(s) 201
BseCI ATCGAT 1 cut(s) 205
BseDI CCNNGG 2 cut(s) 35, 59
BseGI GGATG 3 cut(s) 320, 635, 738
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 3 cut(s) 127, 567, 568
BseMI GCAATG 1 cut(s) 880
BseMII CTCAG 1 cut(s) 555
BseNI ACTGG 2 cut(s) 583, 664
BseRI GAGGAG 1 cut(s) 251
BseSI GKGCMC 2 cut(s) 561, 670
BseXI GCAGC 2 cut(s) 275, 797
BsgI GTGCAG 2 cut(s) 191, 213
BshFI GGCC 3 cut(s) 34, 58, 110
BshNI GGYRCC 1 cut(s) 556
BshVI ATCGAT 1 cut(s) 205
BsiSI CCGG 2 cut(s) 111, 121
BslI CCNNNNNNNGG 3 cut(s) 127, 567, 568
BsmAI GTCTC 1 cut(s) 451
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 3 cut(s) 34, 58, 110
Bsp1286I GDGCHC 2 cut(s) 561, 670
Bsp143I GATC 4 cut(s) 202, 355, 713, 751
BspACI CCGC 5 cut(s) 163, 267, 291, 380, 402
BspANI GGCC 3 cut(s) 34, 58, 110
BspCNI CTCAG 1 cut(s) 556
BspDI ATCGAT 1 cut(s) 205
BspLI GGNNCC 2 cut(s) 384, 558
BspMAI CTGCAG 1 cut(s) 265
BspPI GGATC 2 cut(s) 708, 746
BspT107I GGYRCC 1 cut(s) 556
BsrBI CCGCTC 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 880
BsrI ACTGG 2 cut(s) 583, 664
BssECI CCNNGG 2 cut(s) 35, 59
BssMI GATC 4 cut(s) 202, 355, 713, 751
BssSI CACGAG 1 cut(s) 689
BssT1I CCWWGG 2 cut(s) 35, 59
Bst2BI CACGAG 1 cut(s) 689
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 534
BstDEI CTNAG 2 cut(s) 83, 564
BstF5I GGATG 3 cut(s) 320, 635, 738
BstKTI GATC 4 cut(s) 205, 358, 716, 754
BstMAI GTCTC 1 cut(s) 451
BstMBI GATC 4 cut(s) 202, 355, 713, 751
BstMWI GCNNNNNNNGC 2 cut(s) 169, 288
BstNSI RCATGY 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 120
BstSFI CTRYAG 1 cut(s) 261
BstSLI GKGCMC 2 cut(s) 561, 670
BstV1I GCAGC 2 cut(s) 275, 797
BstX2I RGATCY 2 cut(s) 355, 751
BstYI RGATCY 2 cut(s) 355, 751
Bsu15I ATCGAT 1 cut(s) 205
BsuI GTATCC 1 cut(s) 605
BsuRI GGCC 3 cut(s) 34, 58, 110
BsuTUI ATCGAT 1 cut(s) 205
BtrI CACGTC 2 cut(s) 544, 665
BtsCI GGATG 3 cut(s) 320, 635, 738
Cfr13I GGNCC 1 cut(s) 32
ClaI ATCGAT 1 cut(s) 205
Csp6I GTAC 2 cut(s) 582, 697
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 1 cut(s) 17
CviQI GTAC 2 cut(s) 582, 697
DdeI CTNAG 2 cut(s) 83, 564
DpnI GATC 4 cut(s) 204, 357, 715, 753
DpnII GATC 4 cut(s) 202, 355, 713, 751
DraIII CACNNNGTG 1 cut(s) 454
EaeI YGGCCR 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
Eco130I CCWWGG 2 cut(s) 35, 59
EcoT14I CCWWGG 2 cut(s) 35, 59
ErhI CCWWGG 2 cut(s) 35, 59
FaeI CATG 1 cut(s) 20
FaiI YATR 6 cut(s) 18, 473, 722, 747, 887, 889
FatI CATG 1 cut(s) 16
FauI CCCGC 1 cut(s) 409
Fnu4HI GCNGC 5 cut(s) 164, 264, 267, 292, 786
FokI GGATG 3 cut(s) 307, 642, 725
Fsp4HI GCNGC 5 cut(s) 164, 264, 267, 292, 786
GluI GCNGC 5 cut(s) 164, 264, 267, 292, 786
HaeIII GGCC 3 cut(s) 34, 58, 110
HapII CCGG 2 cut(s) 111, 121
Hin1II CATG 1 cut(s) 20
HincII GTYRAC 4 cut(s) 6, 70, 94, 829
HindII GTYRAC 4 cut(s) 6, 70, 94, 829
HinfI GANTC 6 cut(s) 326, 344, 368, 674, 809, 825
HpaII CCGG 2 cut(s) 111, 121
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 6 cut(s) 6, 46, 70, 94, 222, 829
Hpy188I TCNGA 3 cut(s) 325, 537, 772
Hpy188III TCNNGA 2 cut(s) 348, 689
Hpy8I GTNNAC 6 cut(s) 6, 46, 70, 94, 222, 829
HpyAV CCTTC 1 cut(s) 407
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 3 cut(s) 543, 664, 831
HpyCH4V TGCA 5 cut(s) 16, 22, 172, 194, 263
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 288
HpyF3I CTNAG 2 cut(s) 83, 564
HpySE526I ACGT 3 cut(s) 543, 664, 831
Hsp92II CATG 1 cut(s) 20
Kzo9I GATC 4 cut(s) 202, 355, 713, 751
LmnI GCTCC 3 cut(s) 113, 274, 350
Lsp1109I GCAGC 2 cut(s) 275, 797
LweI GCATC 1 cut(s) 797
MaeII ACGT 3 cut(s) 543, 664, 831
MaeIII GTNAC 2 cut(s) 124, 574
MalI GATC 4 cut(s) 204, 357, 715, 753
MbiI CCGCTC 1 cut(s) 269
MboI GATC 4 cut(s) 202, 355, 713, 751
MboII GAAGA 6 cut(s) 346, 389, 433, 521, 761, 818
MflI RGATCY 2 cut(s) 355, 751
MhlI GDGCHC 2 cut(s) 561, 670
MluCI AATT 2 cut(s) 602, 878
MlyI GAGTC 3 cut(s) 335, 668, 834
MmeI TCCRAC 3 cut(s) 417, 532, 779
MseI TTAA 1 cut(s) 881
MspI CCGG 2 cut(s) 111, 121
MspR9I CCNGG 1 cut(s) 122
Mva1269I GAATGC 1 cut(s) 382
MwoI GCNNNNNNNGC 2 cut(s) 169, 288
NciI CCSGG 1 cut(s) 122
NdeII GATC 4 cut(s) 202, 355, 713, 751
NlaIII CATG 1 cut(s) 20
NlaIV GGNNCC 2 cut(s) 384, 558
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 1 cut(s) 20
PctI GAATGC 1 cut(s) 382
PfeI GAWTC 3 cut(s) 344, 368, 809
PkrI GCNGC 5 cut(s) 165, 265, 268, 293, 787
PleI GAGTC 3 cut(s) 334, 668, 833
PpsI GAGTC 3 cut(s) 334, 668, 833
PspN4I GGNNCC 2 cut(s) 384, 558
PspPI GGNCC 1 cut(s) 32
PstI CTGCAG 1 cut(s) 265
PsuI RGATCY 2 cut(s) 355, 751
RsaI GTAC 2 cut(s) 583, 698
RsaNI GTAC 2 cut(s) 582, 697
SaqAI TTAA 1 cut(s) 881
SatI GCNGC 5 cut(s) 164, 264, 267, 292, 786
Sau3AI GATC 4 cut(s) 202, 355, 713, 751
Sau96I GGNCC 1 cut(s) 32
SchI GAGTC 3 cut(s) 335, 668, 834
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 2 cut(s) 561, 670
SfaNI GCATC 1 cut(s) 797
SfcI CTRYAG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 623
SmoI CTYRAG 1 cut(s) 623
Sse9I AATT 2 cut(s) 602, 878
SsiI CCGC 5 cut(s) 163, 267, 291, 380, 402
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 2 cut(s) 35, 59
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 3 cut(s) 546, 667, 834
TaqI TCGA 4 cut(s) 205, 639, 672, 791
TasI AATT 2 cut(s) 602, 878
TatI WGTACW 1 cut(s) 696
TauI GCSGC 3 cut(s) 166, 269, 294
TfiI GAWTC 3 cut(s) 344, 368, 809
Tru1I TTAA 1 cut(s) 881
Tru9I TTAA 1 cut(s) 881
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 2 cut(s) 263, 785
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 8 cut(s) 426, 492, 521, 597, 727, 762, 854, 891
TspGWI ACGGA 2 cut(s) 587, 706
XapI RAATTY 1 cut(s) 602
XceI RCATGY 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.