Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001250

Physical Location & Seq

Genomic Coordinates Reverse (-)

45160978 .. 45163019

Gene Structure 2042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG181000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGATGTCTACTTCTGATCATGATGATCTCAGATCAATATTAACCAACATGGTGGTGAGGGGAAAAAGAAAACGAGTTGAAACCATACCAGCTGGTGAAATTGAAGTTTCATTCAAACTTTCTAGTCATTGCTATTCCAATCAGAGTCACAATGAGAAGGAAAGAGAAAATGAGACTACTAGTAGTACTCCTTGTCATTTGTCTTTCTTTGAGAGACTCAAAGGATGGAAGCTCGAGCGCAAACAAAGATGCAAGGGACAAATCAACACGTACTACCATCACTTCAAATCAAACATCGTCTTGCGATCAATTAAAGAGGTGATAGAATTTATGCTTAATGGAAAATATCCAAAAGAGCAGGCTGATCGCTGCAATGAGAAGATTCATTTTCTTTTCGGTTTGACTAAAGAAGAGTTTACAGGGTCATCGTCAACCTCCAATATGGAAGCACGAGATGTAAAACGCTTGAAAGGAGGATACTTCTTGAGGAGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook

Protein Analysis

165

Amino Acids

19.3

Weight (kDa)

9.39

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02611 FvH4_4g02612 FvH4_5g14730 FvH4_5g20350 FvH4_6g23221
malus_domestica	MD12G1142400.v1.1
prunus_persica	Prupe.6G255700_v2.0.a1
pyrus_communis	pycom12g13720
rosa_laevigata	RLG00000009914 RLG00000009922 RLG00000009923 RLG00000022757 RLG00000023405 RLG00000023428
rosa_multiflora	Rmu_sc0001380.1_g000014 Rmu_sc0006160.1_g000004 Rmu_sc0007142.1_g000001 Rmu_sc0038645.1_g000001
rosa_roxburghii	Rroxscaffold_5G00336460 Rroxscaffold_5G00336470 Rroxscaffold_5G00336560 Rroxscaffold_6G00392190 Rroxscaffold_6G00400500
rosa_rugosa	Rorug03G0191200 Rorug03G0330500 Rorug03G0330600
rosa_samantha	Rh2AG375900 Rh2CG353800 Rh3AG242100 Rh3AG305100 Rh3BG275700 Rh3BG277200 Rh3BG318200 Rh3CG338600 Rh3DG269100 Rh3DG340600 Rh4AG032000 Rh4AG032100 Rh4AG032700 Rh4AG181000 Rh4BG026100 Rh4BG026200 Rh4BG180200 Rh4CG035100 Rh4CG035200 Rh4CG035600 Rh4CG036600 Rh4CG192100 Rh4DG027700 Rh4DG027800 Rh4DG028400 Rh4DG176300
rosa_wichuraiana	Rw0G002680 Rw3G021640 Rw4G015120 Rw6G029820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	326
AfaI	GTAC	2 cut(s)	187, 272
AflIII	ACRYGT	1 cut(s)	267
AgsI	TTSAA	5 cut(s)	80, 104, 115, 286, 469
AhlI	ACTAGT	1 cut(s)	179
AluBI	AGCT	2 cut(s)	92, 232
AluI	AGCT	2 cut(s)	92, 232
Alw26I	GTCTC	2 cut(s)	167, 208
Ama87I	CYCGRG	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	369
ApoI	RAATTY	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	240
AsuHPI	GGTGA	3 cut(s)	67, 107, 331
AvaI	CYCGRG	1 cut(s)	233
BauI	CACGAG	1 cut(s)	450
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	2 cut(s)	219, 285
BcgI	CGANNNNNNTGC	2 cut(s)	347, 381
BciVI	GTATCC	1 cut(s)	470
BclI	TGATCA	1 cut(s)	16
BcoDI	GTCTC	2 cut(s)	167, 208
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	2 cut(s)	123, 180
BfuI	GTATCC	1 cut(s)	470
BisI	GCNGC	1 cut(s)	370
BlsI	GCNGC	1 cut(s)	371
BmcAI	AGTACT	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	239
BsaAI	YACGTR	1 cut(s)	270
Bse3DI	GCAATG	2 cut(s)	127, 379
BseGI	GGATG	1 cut(s)	230
BseMI	GCAATG	2 cut(s)	127, 379
BseMII	CTCAG	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	356
BsiHKCI	CYCGRG	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	270
BsmAI	GTCTC	2 cut(s)	167, 208
BsmFI	GGGAC	1 cut(s)	270
BsoBI	CYCGRG	1 cut(s)	233
Bsp143I	GATC	5 cut(s)	16, 25, 32, 305, 364
BspCNI	CTCAG	1 cut(s)	42
BspHI	TCATGA	1 cut(s)	19
BsrDI	GCAATG	2 cut(s)	127, 379
BssMI	GATC	5 cut(s)	16, 25, 32, 305, 364
BssSI	CACGAG	1 cut(s)	450
Bst2BI	CACGAG	1 cut(s)	450
Bst6I	CTCTTC	1 cut(s)	405
BstBAI	YACGTR	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	5 cut(s)	19, 28, 35, 308, 367
BstMAI	GTCTC	2 cut(s)	167, 208
BstMBI	GATC	5 cut(s)	16, 25, 32, 305, 364
BstV1I	GCAGC	1 cut(s)	356
BstXI	CCANNNNNNTGG	1 cut(s)	52
BsuI	GTATCC	1 cut(s)	470
BtsCI	GGATG	1 cut(s)	230
Cac8I	GCNNGC	1 cut(s)	360
CciI	TCATGA	1 cut(s)	19
CfoI	GCGC	1 cut(s)	240
Csp6I	GTAC	2 cut(s)	186, 271
CviAII	CATG	2 cut(s)	20, 49
CviJI	RGCY	3 cut(s)	92, 232, 362
CviKI_1	RGCY	3 cut(s)	92, 232, 362
CviQI	GTAC	2 cut(s)	186, 271
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	5 cut(s)	18, 27, 34, 307, 366
DpnII	GATC	5 cut(s)	16, 25, 32, 305, 364
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco88I	CYCGRG	1 cut(s)	233
FaeI	CATG	2 cut(s)	23, 52
FaiI	YATR	5 cut(s)	21, 50, 86, 332, 443
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	2 cut(s)	19, 48
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	1 cut(s)	370
FokI	GGATG	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	370
FspBI	CTAG	2 cut(s)	123, 180
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	1 cut(s)	370
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	2 cut(s)	23, 52
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HinfI	GANTC	3 cut(s)	145, 216, 382
HphI	GGTGA	3 cut(s)	67, 107, 331
Hpy166II	GTNNAC	3 cut(s)	9, 417, 432
Hpy188I	TCNGA	3 cut(s)	16, 32, 144
Hpy188III	TCNNGA	2 cut(s)	20, 484
Hpy8I	GTNNAC	3 cut(s)	9, 417, 432
HpyAV	CCTTC	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	2 cut(s)	252, 372
HpyF3I	CTNAG	1 cut(s)	29
HpySE526I	ACGT	1 cut(s)	269
Hsp92II	CATG	2 cut(s)	23, 52
HspAI	GCGC	1 cut(s)	238
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	5 cut(s)	16, 25, 32, 305, 364
LpnPI	CCDG	4 cut(s)	78, 102, 344, 405
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	1 cut(s)	239
MaeI	CTAG	2 cut(s)	123, 180
MaeII	ACGT	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	146
MalI	GATC	5 cut(s)	18, 27, 34, 307, 366
MboI	GATC	5 cut(s)	16, 25, 32, 305, 364
MboII	GAAGA	2 cut(s)	391, 422
MluCI	AATT	3 cut(s)	99, 309, 326
MlyI	GAGTC	2 cut(s)	154, 210
MnlI	CCTC	5 cut(s)	51, 310, 445, 467, 480
MseI	TTAA	3 cut(s)	41, 312, 336
MslI	CAYNNNNRTG	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	92
NdeII	GATC	5 cut(s)	16, 25, 32, 305, 364
NlaIII	CATG	2 cut(s)	23, 52
NmuCI	GTSAC	1 cut(s)	146
PaeR7I	CTCGAG	1 cut(s)	233
PagI	TCATGA	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	382
PkrI	GCNGC	1 cut(s)	371
PleI	GAGTC	2 cut(s)	153, 210
PpsI	GAGTC	2 cut(s)	153, 210
Ppu21I	YACGTR	1 cut(s)	270
PspXI	VCTCGAGB	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	92
RsaI	GTAC	2 cut(s)	187, 272
RsaNI	GTAC	2 cut(s)	186, 271
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	3 cut(s)	41, 312, 336
SatI	GCNGC	1 cut(s)	370
Sau3AI	GATC	5 cut(s)	16, 25, 32, 305, 364
ScaI	AGTACT	1 cut(s)	187
SchI	GAGTC	2 cut(s)	154, 210
SetI	ASST	5 cut(s)	94, 234, 272, 321, 437
SfaNI	GCATC	1 cut(s)	239
Sfr274I	CTCGAG	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	233, 484
SmoI	CTYRAG	2 cut(s)	233, 484
SpeI	ACTAGT	1 cut(s)	179
Sse9I	AATT	3 cut(s)	99, 309, 326
SspI	AATATT	1 cut(s)	39
SspMI	CTAG	2 cut(s)	123, 180
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	1 cut(s)	234
TasI	AATT	3 cut(s)	99, 309, 326
TatI	WGTACW	1 cut(s)	185
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	3 cut(s)	41, 312, 336
Tru9I	TTAA	3 cut(s)	41, 312, 336
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	1 cut(s)	369
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	2 cut(s)	99, 374
XapI	RAATTY	1 cut(s)	326
XhoI	CTCGAG	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	8
XspI	CTAG	2 cut(s)	123, 180
ZrmI	AGTACT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.