FvH4_5g14730

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
8361859 .. 8362734
876 bp
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UTR
Exon/CDS
Intron
FvH4_5g14730.t1

Sequence Viewer

Length: 336 bp
ATGATAGTCCATGTTTTGAGAATTGTCGGGTGTGAAGGTGAAGAGGAAGATGATGCAGCTAAAAAGATCTTTATAGCAGCTAAATCAATCATCGAATCTATGATTTACCAGATCAAAGAGTATTTCACACACGTACAATCGAAGATTGTAACGAGATCAGTTCCTGAAATTGTTAGGTTTATCCTTTACGAGGTGACACCTAAACAAATGAAGGAAGCCAACAAAAAACACAAAGCGATAAGTATATCGGATCCGGCTAATGAGGGGGAGTCGTACATGGAGATGGTTTTACGTGTAGAATGGGACGCTGAAAGATCGAAGTGCTATCATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.9

Weight (kDa)

6.43

Isoelectric Point (pI)

51.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 245, 258
AfaI GTAC 2 cut(s) 135, 275
AfiI CCNNNNNNNGG 1 cut(s) 190
AflIII ACRYGT 2 cut(s) 130, 292
AluBI AGCT 2 cut(s) 59, 80
AluI AGCT 2 cut(s) 59, 80
AlwI GGATC 2 cut(s) 245, 258
AlwNI CAGNNNCTG 1 cut(s) 164
ApeKI GCWGC 2 cut(s) 56, 77
AsuHPI GGTGA 2 cut(s) 50, 205
BamHI GGATCC 1 cut(s) 250
BbvI GCAGC 2 cut(s) 68, 89
BccI CCATC 1 cut(s) 277
BglII AGATCT 1 cut(s) 66
BisI GCNGC 2 cut(s) 57, 78
BlsI GCNGC 2 cut(s) 58, 79
BmiI GGNNCC 1 cut(s) 252
BmsI GCATC 1 cut(s) 43
BsaAI YACGTR 2 cut(s) 133, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 190
BseXI GCAGC 2 cut(s) 68, 89
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 317
Bsp143I GATC 5 cut(s) 66, 111, 155, 250, 314
BspLI GGNNCC 1 cut(s) 252
BspPI GGATC 2 cut(s) 245, 258
BssMI GATC 5 cut(s) 66, 111, 155, 250, 314
Bst6I CTCTTC 1 cut(s) 36
BstBAI YACGTR 2 cut(s) 133, 293
BstENI CCTNNNNNAGG 1 cut(s) 188
BstKTI GATC 5 cut(s) 69, 114, 158, 253, 317
BstMBI GATC 5 cut(s) 66, 111, 155, 250, 314
BstV1I GCAGC 2 cut(s) 68, 89
BstX2I RGATCY 2 cut(s) 66, 250
BstYI RGATCY 2 cut(s) 66, 250
CaiI CAGNNNCTG 1 cut(s) 164
CseI GACGC 1 cut(s) 314
Csp6I GTAC 2 cut(s) 134, 274
CviAII CATG 2 cut(s) 11, 277
CviJI RGCY 4 cut(s) 59, 80, 218, 257
CviKI_1 RGCY 4 cut(s) 59, 80, 218, 257
CviQI GTAC 2 cut(s) 134, 274
DpnI GATC 5 cut(s) 68, 113, 157, 252, 316
DpnII GATC 5 cut(s) 66, 111, 155, 250, 314
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
EcoNI CCTNNNNNAGG 1 cut(s) 188
FaeI CATG 2 cut(s) 14, 280
FaiI YATR 6 cut(s) 12, 74, 101, 245, 278, 330
FaqI GGGAC 1 cut(s) 317
FatI CATG 2 cut(s) 10, 276
Fnu4HI GCNGC 2 cut(s) 57, 78
Fsp4HI GCNGC 2 cut(s) 57, 78
GluI GCNGC 2 cut(s) 57, 78
HapII CCGG 1 cut(s) 254
HgaI GACGC 1 cut(s) 314
Hin1II CATG 2 cut(s) 14, 280
HinfI GANTC 2 cut(s) 95, 269
HpaII CCGG 1 cut(s) 254
HphI GGTGA 2 cut(s) 50, 205
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 1 cut(s) 164
HpyAV CCTTC 2 cut(s) 29, 205
HpyCH4IV ACGT 2 cut(s) 132, 292
HpyCH4V TGCA 1 cut(s) 56
HpySE526I ACGT 2 cut(s) 132, 292
Hsp92II CATG 2 cut(s) 14, 280
Kzo9I GATC 5 cut(s) 66, 111, 155, 250, 314
LpnPI CCDG 3 cut(s) 122, 177, 267
Lsp1109I GCAGC 2 cut(s) 68, 89
LweI GCATC 1 cut(s) 43
MaeII ACGT 2 cut(s) 132, 292
MaeIII GTNAC 2 cut(s) 148, 193
MalI GATC 5 cut(s) 68, 113, 157, 252, 316
MboI GATC 5 cut(s) 66, 111, 155, 250, 314
MboII GAAGA 3 cut(s) 53, 59, 154
MflI RGATCY 2 cut(s) 66, 250
MluCI AATT 2 cut(s) 21, 168
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 3 cut(s) 37, 184, 256
MslI CAYNNNNRTG 1 cut(s) 281
MspI CCGG 1 cut(s) 254
NdeII GATC 5 cut(s) 66, 111, 155, 250, 314
NlaIII CATG 2 cut(s) 14, 280
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 193
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 2 cut(s) 58, 79
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
Ppu21I YACGTR 2 cut(s) 133, 293
PspN4I GGNNCC 1 cut(s) 252
PstNI CAGNNNCTG 1 cut(s) 164
PsuI RGATCY 2 cut(s) 66, 250
RsaI GTAC 2 cut(s) 135, 275
RsaNI GTAC 2 cut(s) 134, 274
RseI CAYNNNNRTG 1 cut(s) 281
SatI GCNGC 2 cut(s) 57, 78
Sau3AI GATC 5 cut(s) 66, 111, 155, 250, 314
SchI GAGTC 1 cut(s) 278
SetI ASST 8 cut(s) 40, 61, 82, 135, 179, 195, 202, 295
SfaNI GCATC 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 281
Sse9I AATT 2 cut(s) 21, 168
TaiI ACGT 2 cut(s) 135, 295
TaqI TCGA 3 cut(s) 93, 140, 317
TasI AATT 2 cut(s) 21, 168
TfiI GAWTC 1 cut(s) 95
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 2 cut(s) 56, 77
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 224
XagI CCTNNNNNAGG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.