Rh2AG375900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001250
Physical Location & Seq
Forward (+)
56161736 .. 56164120
2385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG375900.1

Sequence Viewer

Length: 837 bp
ATGGAATCGTCAAATTCTGAGGAAGGTTTCTCCAGAGTTCTCCAAGTAGAAGAGACGGTACAAGATAAACTAATCGAAAACCTTAGTCATTTGGATTCTGAACGATTAAAAGAATTGAAATCTCAATCACCTTCTGGAGAAAGAATTTACCGAGTTGTCACAGGTCCCTTTCCTTTCCCAGCAACGCAAGACACTAATCTCCAAAGCATAATGGTAAATCATCGCCGGTGCCGATCTGCGACAACTCGCATGGCAGAAGTTTCTGATGTGATGTTTCAATTACCAGAAGATTTTGAAATTAGTGATGAAACTGTTAACAAGCTTATCCCTAAAGAAGAGAAAATTAGAAGATATGTTGAACATATGATAAAACAATACTCTTTCTTTGAAAGACTCCGTGGTTGGAGAATAGAGAGAAGGCAACGAGTCAGCAGACATCTTGATACGTATTACAATCATGAGCGTTCAAAGACAAAAGCAAGATCGACTCGTGATGTTGTAAACTTTATCATTTATGAGTATCCGCCTAAGCTAAAGGGAGTGGATAAACATGAATTTATGGATGGTTTGAAGGATGAGGATGGTAATGGTAATGTTATATTAGACAAGGAGACTTATGTGCGTGAGGCTTTGAGGATAGTATGGAGTAATCTAGTGAATAGCACAAACGAAGAGTCACCAGTATTCAAAGAAAAGGGAAGGAATGAAGTCAATATGTCAAATGTCATTTCATCTCCACCCCAAAATGACAATGAAGCTTTGGAGAATGAACAAAGCTCAGTTGAACCTCAAAGACGTGTGGTGTTGGGTGTGTGGATCCGATTCCACATAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook

Protein Analysis

278

Amino Acids

32.62

Weight (kDa)

6.06

Isoelectric Point (pI)

61.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 228
AciI CCGC 1 cut(s) 524
AclWI GGATC 2 cut(s) 811, 824
AcsI RAATTY 3 cut(s) 13, 144, 554
AfaI GTAC 1 cut(s) 60
AflIII ACRYGT 1 cut(s) 796
AgsI TTSAA 9 cut(s) 118, 278, 296, 359, 389, 468, 571, 688, 785
AjiI CACGTC 1 cut(s) 797
AluBI AGCT 4 cut(s) 322, 532, 758, 777
AluI AGCT 4 cut(s) 322, 532, 758, 777
Alw26I GTCTC 2 cut(s) 47, 605
AlwI GGATC 2 cut(s) 811, 824
ApoI RAATTY 3 cut(s) 13, 144, 554
ArsI GACNNNNNNTTYG 2 cut(s) 659, 691
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 2 cut(s) 120, 669
AvaII GGWCC 1 cut(s) 164
BamHI GGATCC 1 cut(s) 816
BanI GGYRCC 1 cut(s) 228
BarI GAAGNNNNNNTAC 2 cut(s) 42, 74
BauI CACGAG 1 cut(s) 489
BccI CCATC 2 cut(s) 557, 575
BciVI GTATCC 1 cut(s) 531
BcoDI GTCTC 2 cut(s) 47, 605
BfaI CTAG 1 cut(s) 653
BfuI GTATCC 1 cut(s) 531
Bme18I GGWCC 1 cut(s) 164
BmgBI CACGTC 1 cut(s) 797
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 3 cut(s) 166, 230, 818
BpmI CTGGAG 2 cut(s) 16, 156
Bpu10I CCTNAGC 1 cut(s) 528
BsaAI YACGTR 1 cut(s) 447
BsaJI CCNNGG 1 cut(s) 397
Bse118I RCCGGY 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 680
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 3 cut(s) 568, 580, 586
BseMII CTCAG 2 cut(s) 9, 792
BseNI ACTGG 1 cut(s) 680
BseYI CCCAGC 1 cut(s) 178
BshNI GGYRCC 1 cut(s) 228
BsiSI CCGG 1 cut(s) 226
BslFI GGGAC 1 cut(s) 150
BsmAI GTCTC 2 cut(s) 47, 605
BsmBI CGTCTC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 150
Bsp143I GATC 3 cut(s) 233, 482, 816
BspACI CCGC 1 cut(s) 524
BspCNI CTCAG 2 cut(s) 10, 791
BspHI TCATGA 1 cut(s) 457
BspLI GGNNCC 3 cut(s) 166, 230, 818
BspPI GGATC 2 cut(s) 811, 824
BspT107I GGYRCC 1 cut(s) 228
BsrFI RCCGGY 1 cut(s) 225
BsrI ACTGG 1 cut(s) 680
BssAI RCCGGY 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 3 cut(s) 233, 482, 816
BssSI CACGAG 1 cut(s) 489
Bst2BI CACGAG 1 cut(s) 489
Bst4CI ACNGT 2 cut(s) 58, 313
Bst6I CTCTTC 3 cut(s) 45, 330, 666
BstBAI YACGTR 1 cut(s) 447
BstDEI CTNAG 4 cut(s) 18, 83, 528, 778
BstDSI CCRYGG 1 cut(s) 397
BstF5I GGATG 3 cut(s) 568, 580, 586
BstKTI GATC 3 cut(s) 236, 485, 819
BstMAI GTCTC 2 cut(s) 47, 605
BstMBI GATC 3 cut(s) 233, 482, 816
BstSNI TACGTA 1 cut(s) 447
BstX2I RGATCY 1 cut(s) 816
BstYI RGATCY 1 cut(s) 816
BsuI GTATCC 1 cut(s) 531
BtgI CCRYGG 1 cut(s) 397
BtgZI GCGATG 1 cut(s) 206
BtrI CACGTC 1 cut(s) 797
BtsCI GGATG 3 cut(s) 568, 580, 586
CciI TCATGA 1 cut(s) 457
Cfr10I RCCGGY 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 59
CviAII CATG 3 cut(s) 250, 458, 551
CviJI RGCY 5 cut(s) 322, 532, 629, 758, 777
CviKI_1 RGCY 5 cut(s) 322, 532, 629, 758, 777
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 4 cut(s) 18, 83, 528, 778
DpnI GATC 3 cut(s) 235, 484, 818
DpnII GATC 3 cut(s) 233, 482, 816
Eam1104I CTCTTC 3 cut(s) 45, 330, 666
EarI CTCTTC 3 cut(s) 45, 330, 666
EciI GGCGGA 1 cut(s) 513
Eco105I TACGTA 1 cut(s) 447
Eco47I GGWCC 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 164
Esp3I CGTCTC 1 cut(s) 47
FaeI CATG 3 cut(s) 253, 461, 554
FaqI GGGAC 1 cut(s) 150
FatI CATG 3 cut(s) 249, 457, 550
FauNDI CATATG 1 cut(s) 363
FokI GGATG 3 cut(s) 575, 587, 593
FspBI CTAG 1 cut(s) 653
GsaI CCCAGC 1 cut(s) 182
GsuI CTGGAG 2 cut(s) 16, 156
HapII CCGG 1 cut(s) 226
Hin1II CATG 3 cut(s) 253, 461, 554
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 2 cut(s) 320, 756
HinfI GANTC 7 cut(s) 5, 95, 393, 426, 487, 674, 822
HpaI GTTAAC 1 cut(s) 316
HpaII CCGG 1 cut(s) 226
HphI GGTGA 2 cut(s) 120, 669
Hpy166II GTNNAC 2 cut(s) 316, 502
Hpy188I TCNGA 4 cut(s) 19, 100, 265, 821
Hpy188III TCNNGA 5 cut(s) 33, 135, 440, 458, 491
Hpy8I GTNNAC 2 cut(s) 316, 502
HpyAV CCTTC 5 cut(s) 17, 141, 411, 565, 693
HpyCH4III ACNGT 2 cut(s) 58, 313
HpyCH4IV ACGT 2 cut(s) 446, 796
HpyF3I CTNAG 4 cut(s) 18, 83, 528, 778
HpySE526I ACGT 2 cut(s) 446, 796
Hsp92II CATG 3 cut(s) 253, 461, 554
KspAI GTTAAC 1 cut(s) 316
Kzo9I GATC 3 cut(s) 233, 482, 816
LpnPI CCDG 7 cut(s) 46, 120, 147, 192, 239, 297, 693
MaeI CTAG 1 cut(s) 653
MaeII ACGT 2 cut(s) 446, 796
MaeIII GTNAC 2 cut(s) 157, 675
MalI GATC 3 cut(s) 235, 484, 818
MboI GATC 3 cut(s) 233, 482, 816
MboII GAAGA 5 cut(s) 62, 299, 347, 360, 683
MflI RGATCY 1 cut(s) 816
MluCI AATT 7 cut(s) 13, 113, 144, 278, 297, 342, 554
MlyI GAGTC 4 cut(s) 387, 435, 481, 683
MmeI TCCRAC 1 cut(s) 383
MnlI CCTC 5 cut(s) 13, 571, 619, 627, 798
MseI TTAA 2 cut(s) 107, 315
MspI CCGG 1 cut(s) 226
NdeI CATATG 1 cut(s) 363
NdeII GATC 3 cut(s) 233, 482, 816
NlaIII CATG 3 cut(s) 253, 461, 554
NlaIV GGNNCC 3 cut(s) 166, 230, 818
NmuCI GTSAC 2 cut(s) 157, 675
PagI TCATGA 1 cut(s) 457
PcsI WCGNNNNNNNCGW 1 cut(s) 229
PfeI GAWTC 3 cut(s) 5, 95, 822
PleI GAGTC 4 cut(s) 387, 434, 481, 682
PpsI GAGTC 4 cut(s) 387, 434, 481, 682
Ppu21I YACGTR 1 cut(s) 447
PpuMI RGGWCCY 1 cut(s) 164
Psp5II RGGWCCY 1 cut(s) 164
PspFI CCCAGC 1 cut(s) 178
PspN4I GGNNCC 3 cut(s) 166, 230, 818
PspPI GGNCC 1 cut(s) 164
PspPPI RGGWCCY 1 cut(s) 164
PsuI RGATCY 1 cut(s) 816
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 107, 315
Sau3AI GATC 3 cut(s) 233, 482, 816
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 4 cut(s) 387, 435, 481, 683
SgrAI CRCCGGYG 1 cut(s) 225
SinI GGWCC 1 cut(s) 164
SnaBI TACGTA 1 cut(s) 447
Sse9I AATT 7 cut(s) 13, 113, 144, 278, 297, 342, 554
SsiI CCGC 1 cut(s) 524
SspMI CTAG 1 cut(s) 653
TaaI ACNGT 2 cut(s) 58, 313
TaiI ACGT 2 cut(s) 449, 799
TaqI TCGA 2 cut(s) 75, 485
TasI AATT 7 cut(s) 13, 113, 144, 278, 297, 342, 554
TfiI GAWTC 3 cut(s) 5, 95, 822
Tru1I TTAA 2 cut(s) 107, 315
Tru9I TTAA 2 cut(s) 107, 315
TseFI GTSAC 2 cut(s) 157, 675
Tsp45I GTSAC 2 cut(s) 157, 675
TspDTI ATGAA 6 cut(s) 321, 567, 720, 720, 768, 783
TspGWI ACGGA 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 3 cut(s) 13, 144, 554
XspI CTAG 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.