Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001250

Physical Location & Seq

Genomic Coordinates Reverse (-)

34998295 .. 34999946

Gene Structure 1652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG176300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGATGTCTACTTCTAATCATGAAGATCTCAAATCGATATTAACCAACATGGTGGTGAAATCAAAATCAATTCTTGAATGTTTATTTCCAATAGCTGATGAAACAAAAACTAATCATCAAAGGACATCAACAAGTCTGAGGGGAAAAAGAAAACGAGTTGAAACCATACCAGCAGGTGAAATTGAAGTTTCATTCAAACTTTCTAGTGATTGCTATTCCAATCAGAGGCACAATGAGAAGGAAAGAGAAAATGAGACTACTAGTAGTGCTCCTTGTCATTTGTCTTTCTTTGAGAGACTCGAAGGATGGAAGCTCGAGCGCAAACAAAGATGCAAGGGACAAATCGACACGTACTACCATCACTTTAAATCAAACATCGTCTTGCGCTCAATTAAAGAGGTGATAGAATTTATGCTTAATGGAAAATATCCAAAAGAGCAGGCTGATCGCTCCAATGAGAAGATTCATTTTCTTTTCGGTTTGACTAAAGAAGAGTTTATAGGGTCATCCTCAACCTCCAATATAGAAGCACGAGATGTAAAACGCTTGAAAGGAGGATACTTCTTGAGGAGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook

Protein Analysis

192

Amino Acids

22.31

Weight (kDa)

9.23

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02611 FvH4_4g02612 FvH4_5g14730 FvH4_5g20350 FvH4_6g23221
malus_domestica	MD12G1142400.v1.1
prunus_persica	Prupe.6G255700_v2.0.a1
pyrus_communis	pycom12g13720
rosa_laevigata	RLG00000009914 RLG00000009922 RLG00000009923 RLG00000022757 RLG00000023405 RLG00000023428
rosa_multiflora	Rmu_sc0001380.1_g000014 Rmu_sc0006160.1_g000004 Rmu_sc0007142.1_g000001 Rmu_sc0038645.1_g000001
rosa_roxburghii	Rroxscaffold_5G00336460 Rroxscaffold_5G00336470 Rroxscaffold_5G00336560 Rroxscaffold_6G00392190 Rroxscaffold_6G00400500
rosa_rugosa	Rorug03G0191200 Rorug03G0330500 Rorug03G0330600
rosa_samantha	Rh2AG375900 Rh2CG353800 Rh3AG242100 Rh3AG305100 Rh3BG275700 Rh3BG277200 Rh3BG318200 Rh3CG338600 Rh3DG269100 Rh3DG340600 Rh4AG032000 Rh4AG032100 Rh4AG032700 Rh4AG181000 Rh4BG026100 Rh4BG026200 Rh4BG180200 Rh4CG035100 Rh4CG035200 Rh4CG035600 Rh4CG036600 Rh4CG192100 Rh4DG027700 Rh4DG027800 Rh4DG028400 Rh4DG176300
rosa_wichuraiana	Rw0G002680 Rw3G021640 Rw4G015120 Rw6G029820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	164
Acc36I	ACCTGC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	407
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	225
AflIII	ACRYGT	1 cut(s)	348
AgsI	TTSAA	5 cut(s)	77, 161, 185, 196, 550
AhlI	ACTAGT	1 cut(s)	260
AluBI	AGCT	2 cut(s)	95, 313
AluI	AGCT	2 cut(s)	95, 313
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	2 cut(s)	248, 289
Ama87I	CYCGRG	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	407
AspLEI	GCGC	2 cut(s)	321, 387
AsuHPI	GGTGA	3 cut(s)	67, 188, 412
AvaI	CYCGRG	1 cut(s)	314
BauI	CACGAG	1 cut(s)	531
Bbv12I	GWGCWC	1 cut(s)	271
BccI	CCATC	2 cut(s)	300, 366
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BciVI	GTATCC	1 cut(s)	551
BcoDI	GTCTC	2 cut(s)	248, 289
BcuI	ACTAGT	1 cut(s)	260
BfaI	CTAG	2 cut(s)	204, 261
BfuAI	ACCTGC	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	551
BglII	AGATCT	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	320
Bsa29I	ATCGAT	1 cut(s)	35
BsaAI	YACGTR	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
BseCI	ATCGAT	1 cut(s)	35
BseGI	GGATG	2 cut(s)	311, 506
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	128
BshVI	ATCGAT	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	271
BsiHKCI	CYCGRG	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmAI	GTCTC	2 cut(s)	248, 289
BsmFI	GGGAC	1 cut(s)	351
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	2 cut(s)	25, 445
BspCNI	CTCAG	1 cut(s)	129
BspDI	ATCGAT	1 cut(s)	35
BspHI	TCATGA	1 cut(s)	19
BspMI	ACCTGC	1 cut(s)	164
BssMI	GATC	2 cut(s)	25, 445
BssSI	CACGAG	1 cut(s)	531
Bst2BI	CACGAG	1 cut(s)	531
Bst6I	CTCTTC	1 cut(s)	486
BstBAI	YACGTR	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	311, 506
BstHHI	GCGC	2 cut(s)	321, 387
BstKTI	GATC	2 cut(s)	28, 448
BstMAI	GTCTC	2 cut(s)	248, 289
BstMBI	GATC	2 cut(s)	25, 445
BstX2I	RGATCY	1 cut(s)	25
BstXI	CCANNNNNNTGG	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	25
Bsu15I	ATCGAT	1 cut(s)	35
BsuI	GTATCC	1 cut(s)	551
BsuTUI	ATCGAT	1 cut(s)	35
BtsCI	GGATG	2 cut(s)	311, 506
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	441
CciI	TCATGA	1 cut(s)	19
CfoI	GCGC	2 cut(s)	321, 387
ClaI	ATCGAT	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	2 cut(s)	20, 49
CviJI	RGCY	3 cut(s)	95, 313, 443
CviKI_1	RGCY	3 cut(s)	95, 313, 443
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	2 cut(s)	27, 447
DpnII	GATC	2 cut(s)	25, 445
DraI	TTTAAA	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
Eco88I	CYCGRG	1 cut(s)	314
FaeI	CATG	2 cut(s)	23, 52
FaiI	YATR	6 cut(s)	21, 50, 167, 413, 500, 524
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	2 cut(s)	19, 48
FblI	GTMKAC	1 cut(s)	8
FokI	GGATG	2 cut(s)	318, 493
FspBI	CTAG	2 cut(s)	204, 261
GlaI	GCGC	2 cut(s)	320, 386
HhaI	GCGC	2 cut(s)	321, 387
Hin1II	CATG	2 cut(s)	23, 52
Hin6I	GCGC	2 cut(s)	319, 385
HinP1I	GCGC	2 cut(s)	319, 385
HinfI	GANTC	2 cut(s)	297, 463
HphI	GGTGA	3 cut(s)	67, 188, 412
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	2 cut(s)	138, 225
Hpy188III	TCNNGA	3 cut(s)	20, 74, 565
Hpy8I	GTNNAC	1 cut(s)	9
HpyAV	CCTTC	2 cut(s)	232, 296
HpyCH4IV	ACGT	1 cut(s)	350
HpyCH4V	TGCA	1 cut(s)	333
HpyF3I	CTNAG	1 cut(s)	137
HpySE526I	ACGT	1 cut(s)	350
Hsp92II	CATG	2 cut(s)	23, 52
HspAI	GCGC	2 cut(s)	319, 385
Kzo9I	GATC	2 cut(s)	25, 445
LmnI	GCTCC	2 cut(s)	274, 455
LpnPI	CCDG	3 cut(s)	159, 183, 425
LweI	GCATC	1 cut(s)	320
MaeI	CTAG	2 cut(s)	204, 261
MaeII	ACGT	1 cut(s)	350
MalI	GATC	2 cut(s)	27, 447
MboI	GATC	2 cut(s)	25, 445
MboII	GAAGA	3 cut(s)	35, 472, 503
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	4 cut(s)	69, 180, 390, 407
MlyI	GAGTC	1 cut(s)	291
MnlI	CCTC	7 cut(s)	132, 219, 391, 520, 526, 548, 561
MseI	TTAA	4 cut(s)	41, 366, 393, 417
MslI	CAYNNNNRTG	1 cut(s)	53
NdeII	GATC	2 cut(s)	25, 445
NlaIII	CATG	2 cut(s)	23, 52
PaeR7I	CTCGAG	1 cut(s)	314
PagI	TCATGA	1 cut(s)	19
PaqCI	CACCTGC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	463
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
Ppu21I	YACGTR	1 cut(s)	351
PspXI	VCTCGAGB	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	4 cut(s)	41, 366, 393, 417
Sau3AI	GATC	2 cut(s)	25, 445
SchI	GAGTC	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	6 cut(s)	97, 178, 315, 353, 402, 518
SfaNI	GCATC	1 cut(s)	320
Sfr274I	CTCGAG	1 cut(s)	314
SlaI	CTCGAG	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	314, 565
SmoI	CTYRAG	2 cut(s)	314, 565
SpeI	ACTAGT	1 cut(s)	260
Sse9I	AATT	4 cut(s)	69, 180, 390, 407
SspMI	CTAG	2 cut(s)	204, 261
TaiI	ACGT	1 cut(s)	353
TaqI	TCGA	4 cut(s)	35, 300, 315, 345
TasI	AATT	4 cut(s)	69, 180, 390, 407
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	4 cut(s)	41, 366, 393, 417
Tru9I	TTAA	4 cut(s)	41, 366, 393, 417
TspDTI	ATGAA	4 cut(s)	36, 114, 180, 455
XapI	RAATTY	1 cut(s)	407
XhoI	CTCGAG	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	8
XspI	CTAG	2 cut(s)	204, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.