Rroxscaffold_6G00392190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001250
Physical Location & Seq
Reverse (-)
11500112 .. 11502720
2609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00392190.1

Sequence Viewer

Length: 675 bp
ATGTCTTTCGCTTACAACAGTGAATCCTCCGCACCTAAAAATGCAGACACTCTTGCCTATCTTCAAAGTTGCAACATCAAAACTAAAACAAATGCAAGGAAAACCAATTCCAGCTCTACCCTCTCAATCAAACGCGAAGAAGAGGATGAGGTCATCCCCATAAGTAGTGAGAAGGATTTAGAGACACTACTCAACTATAAGCCACCAAAGGCTGCGACGCTGCTCATGGGAGAAATTGAGGTCTCTTTTCATTTACCCGAAGATCTAGCACTGCATGAGTTAGATCTTGAGAAGTTGCAGCCCTTGGAAAGTACAAGTACCAATACTCCGAGCAGTCGACAATTTACCATCTCAGAGAGGCTTGCTGGATGGAAGATCGAACGCTATATAAGAATTAAAAACCCAAAGCAGCATGACACGTATTTTCGTCACCATCAATCAAGGGCCAAGTTTCGATCAGTGGTTGAGGTGGCGAATTTTATACTTTACGAGCCACCAATTGATGTGAAACAAGTTGGGTTATCTTCATCTCATCCTCCTCTAGAAGTCGTGGAAGAGTTGAAGCAAGTTTCGAGCTGTGGAAGGAGCTACATCGATCGGAAGAAGCCACGGCGGAGCTGCAAATTGCCTTCGTCGGAACTCTCAATTCCGGTCACCATAGTAGGTGATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook

Protein Analysis

224

Amino Acids

25.35

Weight (kDa)

7.72

Isoelectric Point (pI)

64.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 337
AccII CGCG 1 cut(s) 135
AciI CCGC 2 cut(s) 30, 613
AcsI RAATTY 1 cut(s) 475
AfaI GTAC 2 cut(s) 313, 319
AflIII ACRYGT 1 cut(s) 417
AgsI TTSAA 2 cut(s) 65, 562
AluBI AGCT 4 cut(s) 114, 576, 588, 618
AluI AGCT 4 cut(s) 114, 576, 588, 618
Alw26I GTCTC 2 cut(s) 176, 247
AoxI GGCC 1 cut(s) 444
ApeKI GCWGC 5 cut(s) 212, 220, 298, 409, 618
ApoI RAATTY 1 cut(s) 475
AspS9I GGNCC 1 cut(s) 444
AsuHPI GGTGA 2 cut(s) 422, 646
BbvI GCAGC 5 cut(s) 199, 207, 310, 421, 605
BccI CCATC 3 cut(s) 356, 363, 441
BceAI ACGGC 1 cut(s) 626
BcoDI GTCTC 2 cut(s) 176, 247
BfaI CTAG 2 cut(s) 266, 542
BglII AGATCT 2 cut(s) 262, 283
BisI GCNGC 5 cut(s) 213, 221, 299, 410, 619
BlsI GCNGC 5 cut(s) 214, 222, 300, 411, 620
BmgT120I GGNCC 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 308
Bsa29I ATCGAT 1 cut(s) 594
BsaAI YACGTR 1 cut(s) 420
BsaI GGTCTC 1 cut(s) 247
BsaJI CCNNGG 2 cut(s) 303, 608
BsaWI WCCGGW 1 cut(s) 649
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
BseCI ATCGAT 1 cut(s) 594
BseDI CCNNGG 2 cut(s) 303, 608
BseGI GGATG 4 cut(s) 151, 153, 374, 532
BseMII CTCAG 1 cut(s) 366
BseRI GAGGAG 1 cut(s) 528
BseXI GCAGC 5 cut(s) 199, 207, 310, 421, 605
Bsh1236I CGCG 1 cut(s) 135
Bsh1285I CGRYCG 1 cut(s) 598
BshFI GGCC 1 cut(s) 446
BshVI ATCGAT 1 cut(s) 594
BsiEI CGRYCG 1 cut(s) 598
BsiSI CCGG 1 cut(s) 650
BsmAI GTCTC 2 cut(s) 176, 247
BsnI GGCC 1 cut(s) 446
Bso31I GGTCTC 1 cut(s) 247
Bsp143I GATC 5 cut(s) 262, 283, 375, 455, 595
BspACI CCGC 2 cut(s) 30, 613
BspANI GGCC 1 cut(s) 446
BspCNI CTCAG 1 cut(s) 365
BspDI ATCGAT 1 cut(s) 594
BspFNI CGCG 1 cut(s) 135
BspTNI GGTCTC 1 cut(s) 247
BssECI CCNNGG 2 cut(s) 303, 608
BssMI GATC 5 cut(s) 262, 283, 375, 455, 595
BssT1I CCWWGG 1 cut(s) 303
Bst4CI ACNGT 1 cut(s) 20
Bst6I CTCTTC 2 cut(s) 135, 549
BstBAI YACGTR 1 cut(s) 420
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 1 cut(s) 352
BstDSI CCRYGG 1 cut(s) 608
BstEII GGTNACC 1 cut(s) 652
BstF5I GGATG 4 cut(s) 151, 153, 374, 532
BstFNI CGCG 1 cut(s) 135
BstKTI GATC 5 cut(s) 265, 286, 378, 458, 598
BstMAI GTCTC 2 cut(s) 176, 247
BstMBI GATC 5 cut(s) 262, 283, 375, 455, 595
BstMCI CGRYCG 1 cut(s) 598
BstPI GGTNACC 1 cut(s) 652
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 5 cut(s) 199, 207, 310, 421, 605
BstX2I RGATCY 2 cut(s) 262, 283
BstYI RGATCY 2 cut(s) 262, 283
Bsu15I ATCGAT 1 cut(s) 594
BsuRI GGCC 1 cut(s) 446
BsuTUI ATCGAT 1 cut(s) 594
BtgI CCRYGG 1 cut(s) 608
BtsCI GGATG 4 cut(s) 151, 153, 374, 532
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 3 cut(s) 25, 269, 465
Cac8I GCNNGC 1 cut(s) 363
Cfr13I GGNCC 1 cut(s) 444
ClaI ATCGAT 1 cut(s) 594
CseI GACGC 1 cut(s) 226
Csp6I GTAC 2 cut(s) 312, 318
CviAII CATG 3 cut(s) 226, 275, 413
CviQI GTAC 2 cut(s) 312, 318
DdeI CTNAG 1 cut(s) 352
DpnI GATC 5 cut(s) 264, 285, 377, 457, 597
DpnII GATC 5 cut(s) 262, 283, 375, 455, 595
Eam1104I CTCTTC 2 cut(s) 135, 549
EarI CTCTTC 2 cut(s) 135, 549
EciI GGCGGA 1 cut(s) 628
Eco130I CCWWGG 1 cut(s) 303
Eco31I GGTCTC 1 cut(s) 247
Eco91I GGTNACC 1 cut(s) 652
EcoO65I GGTNACC 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 3 cut(s) 229, 278, 416
FaiI YATR 9 cut(s) 161, 198, 227, 276, 387, 389, 414, 482, 659
FatI CATG 3 cut(s) 225, 274, 412
FblI GTMKAC 1 cut(s) 337
Fnu4HI GCNGC 5 cut(s) 213, 221, 299, 410, 619
FokI GGATG 4 cut(s) 140, 158, 381, 519
Fsp4HI GCNGC 5 cut(s) 213, 221, 299, 410, 619
FspBI CTAG 2 cut(s) 266, 542
GluI GCNGC 5 cut(s) 213, 221, 299, 410, 619
HaeIII GGCC 1 cut(s) 446
HapII CCGG 1 cut(s) 650
HgaI GACGC 1 cut(s) 226
Hin1II CATG 3 cut(s) 229, 278, 416
HincII GTYRAC 1 cut(s) 338
HindII GTYRAC 1 cut(s) 338
HinfI GANTC 2 cut(s) 23, 668
HpaII CCGG 1 cut(s) 650
HphI GGTGA 2 cut(s) 422, 646
Hpy166II GTNNAC 1 cut(s) 338
Hpy188I TCNGA 4 cut(s) 330, 355, 600, 637
Hpy188III TCNNGA 3 cut(s) 287, 542, 672
Hpy8I GTNNAC 1 cut(s) 338
Hpy99I CGWCG 2 cut(s) 220, 637
HpyAV CCTTC 3 cut(s) 166, 576, 639
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4IV ACGT 1 cut(s) 419
HpyCH4V TGCA 6 cut(s) 44, 72, 95, 274, 298, 621
HpyF3I CTNAG 1 cut(s) 352
HpySE526I ACGT 1 cut(s) 419
Hsp92II CATG 3 cut(s) 229, 278, 416
Kzo9I GATC 5 cut(s) 262, 283, 375, 455, 595
LmnI GCTCC 2 cut(s) 585, 615
LpnPI CCDG 3 cut(s) 124, 351, 663
Lsp1109I GCAGC 5 cut(s) 199, 207, 310, 421, 605
MaeI CTAG 2 cut(s) 266, 542
MaeII ACGT 1 cut(s) 419
MaeIII GTNAC 2 cut(s) 428, 652
MalI GATC 5 cut(s) 264, 285, 377, 457, 597
MboI GATC 5 cut(s) 262, 283, 375, 455, 595
MboII GAAGA 8 cut(s) 53, 149, 152, 272, 385, 516, 566, 613
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 2 cut(s) 262, 283
MluCI AATT 8 cut(s) 106, 234, 341, 393, 475, 498, 623, 645
MmeI TCCRAC 1 cut(s) 615
MnlI CCTC 9 cut(s) 37, 131, 136, 142, 232, 351, 460, 546, 549
MseI TTAA 1 cut(s) 396
MspI CCGG 1 cut(s) 650
MunI CAATTG 1 cut(s) 498
MvnI CGCG 1 cut(s) 135
NdeII GATC 5 cut(s) 262, 283, 375, 455, 595
NlaIII CATG 3 cut(s) 229, 278, 416
NmuCI GTSAC 2 cut(s) 428, 652
PfeI GAWTC 2 cut(s) 23, 668
PkrI GCNGC 5 cut(s) 214, 222, 300, 411, 620
Ple19I CGATCG 1 cut(s) 598
Ppu21I YACGTR 1 cut(s) 420
PspEI GGTNACC 1 cut(s) 652
PspPI GGNCC 1 cut(s) 444
PsuI RGATCY 2 cut(s) 262, 283
PvuI CGATCG 1 cut(s) 598
RsaI GTAC 2 cut(s) 313, 319
RsaNI GTAC 2 cut(s) 312, 318
SalI GTCGAC 1 cut(s) 336
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 5 cut(s) 213, 221, 299, 410, 619
Sau3AI GATC 5 cut(s) 262, 283, 375, 455, 595
Sau96I GGNCC 1 cut(s) 444
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 8 cut(s) 106, 234, 341, 393, 475, 498, 623, 645
SsiI CCGC 2 cut(s) 30, 613
SspMI CTAG 2 cut(s) 266, 542
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 20
TaiI ACGT 1 cut(s) 422
TaqI TCGA 5 cut(s) 337, 378, 454, 572, 594
TasI AATT 8 cut(s) 106, 234, 341, 393, 475, 498, 623, 645
TatI WGTACW 1 cut(s) 311
TfiI GAWTC 2 cut(s) 23, 668
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 3 cut(s) 25, 276, 465
TseFI GTSAC 2 cut(s) 428, 652
TseI GCWGC 5 cut(s) 212, 220, 298, 409, 618
Tsp45I GTSAC 2 cut(s) 428, 652
TspDTI ATGAA 2 cut(s) 239, 516
TspRI CASTG 3 cut(s) 25, 276, 465
XapI RAATTY 1 cut(s) 475
XbaI TCTAGA 1 cut(s) 541
XmiI GTMKAC 1 cut(s) 337
XspI CTAG 2 cut(s) 266, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.