Rh3AG305100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0001250
Physical Location & Seq
Forward (+)
37764095 .. 37806116
42022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG305100.1

Sequence Viewer

Length: 870 bp
ATGTCTTTCGCTTACAACAGTGAATCCTCCGCACCTAAAAATGCAGACACTCTTGCCTATCTTCAAAGTAGTAACACTCAAAGTAGTCAGGATCTGCATGTCCTACTACTTGAAGGAATGAAAAAAATAGTTTCTGTTGCAACATCAAAACTAAAACAAATGCAAGGAAAACCAATTCCAGCTCTACCCCTCTCAATCAAACGCGAAGAAGAGGACGAGGTCATCCCCATAAGTAGTGAGAAGGATTTAGAGACACTACTCAACTATAAGCCACCAAAGGCTGCGACGCTGCTTATGGGAGAAATTGAGGTCTCTTTTCATTTACCCGAAGATCTAGCACTGCATGAGTTAGATCTTGAGAAGTTGCAGCCCTTGGAAAGTACAAGTACCAATACTCCGAGCAGTCGACAATTTACCATCTCAGAGAGGCTTGCTGGATGGAAGATCGAACACTATATAAGAATTAAAAACCCGAAGCAGCATGACATGGAGTCTGAATCAGAGAACTGCAGCGACAAAGGCGAGCGACTGAGATCTAAAGCATCTAATACTTTCGAACCAGCTCCGCCACATGACTTCCGGCCTAGGTTTCGCTGTCGTGGCCTTCGTGTCTACTTGGTTAGTGAGCAGTTGCACAACCTCAGTGGATTAATACGCCGCCAGCAGTATGATCTGGTCAACAAGATCCGCCATGAAAAGTCTCAAGTCTACAACCTTCGTGAGCAGAAAACCTATTGCCAAGTAACTTCTTACGCCTTTATCTCTAACGACGTCAAGGCGCGAAGCGAGGCTGAGGGTTGGACCCGAGTCCATCGGGGAGGTTTTCTTGCCTGGTCCAAATTTTTTCGCTATCTTCAGCCTCTTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook

Protein Analysis

289

Amino Acids

33.18

Weight (kDa)

8.6

Isoelectric Point (pI)

56.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 774
AccI GTMKAC 3 cut(s) 406, 612, 708
AccII CGCG 2 cut(s) 204, 781
AciI CCGC 4 cut(s) 30, 566, 658, 688
AclWI GGATC 2 cut(s) 99, 679
AcsI RAATTY 1 cut(s) 839
AcuI CTGAAG 1 cut(s) 839
AcyI GRCGYC 1 cut(s) 771
AfaI GTAC 2 cut(s) 382, 388
AgsI TTSAA 2 cut(s) 65, 113
AhdI GACNNNNNGTC 1 cut(s) 490
AjnI CCWGG 1 cut(s) 830
AluBI AGCT 2 cut(s) 182, 563
AluI AGCT 2 cut(s) 182, 563
Alw26I GTCTC 3 cut(s) 245, 316, 705
AlwI GGATC 2 cut(s) 99, 679
AlwNI CAGNNNCTG 1 cut(s) 94
Ama87I CYCGRG 1 cut(s) 804
AoxI GGCC 2 cut(s) 581, 601
ApeKI GCWGC 5 cut(s) 281, 289, 367, 478, 510
ApoI RAATTY 1 cut(s) 839
AseI ATTAAT 1 cut(s) 650
AspA2I CCTAGG 1 cut(s) 584
AspLEI GCGC 1 cut(s) 781
AspS9I GGNCC 2 cut(s) 801, 834
AsuII TTCGAA 1 cut(s) 555
AvaI CYCGRG 1 cut(s) 804
AvaII GGWCC 2 cut(s) 801, 834
AvrII CCTAGG 1 cut(s) 584
BbvCI CCTCAGC 1 cut(s) 792
BbvI GCAGC 5 cut(s) 268, 276, 379, 490, 522
BccI CCATC 3 cut(s) 425, 432, 819
BciT130I CCWGG 1 cut(s) 832
BcoDI GTCTC 3 cut(s) 245, 316, 705
BfaI CTAG 2 cut(s) 335, 585
BfmI CTRYAG 1 cut(s) 508
BglII AGATCT 3 cut(s) 331, 352, 533
BisI GCNGC 6 cut(s) 282, 290, 368, 479, 511, 658
BlnI CCTAGG 1 cut(s) 584
BlsI GCNGC 6 cut(s) 283, 291, 369, 480, 512, 659
Bme1390I CCNGG 1 cut(s) 832
Bme18I GGWCC 2 cut(s) 801, 834
BmeRI GACNNNNNGTC 1 cut(s) 490
BmeT110I CYCGRG 1 cut(s) 804
BmgT120I GGNCC 2 cut(s) 801, 834
BmiI GGNNCC 1 cut(s) 803
BmrFI CCNGG 1 cut(s) 832
BmsI GCATC 1 cut(s) 551
BoxI GACNNNNGTC 1 cut(s) 806
Bpu10I CCTNAGC 1 cut(s) 792
Bpu14I TTCGAA 1 cut(s) 555
BpuEI CTTGAG 2 cut(s) 377, 687
BsaHI GRCGYC 1 cut(s) 771
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 2 cut(s) 372, 584
BsaXI ACNNNNNCTCC 2 cut(s) 379, 409
BseBI CCWGG 1 cut(s) 832
BseDI CCNNGG 2 cut(s) 372, 584
BseGI GGATG 2 cut(s) 222, 443
BseMII CTCAG 4 cut(s) 435, 521, 655, 783
BseXI GCAGC 5 cut(s) 268, 276, 379, 490, 522
Bsh1236I CGCG 2 cut(s) 204, 781
BshFI GGCC 2 cut(s) 583, 603
BsiHKCI CYCGRG 1 cut(s) 804
BsiSI CCGG 1 cut(s) 580
BsmAI GTCTC 3 cut(s) 245, 316, 705
BsnI GGCC 2 cut(s) 583, 603
Bso31I GGTCTC 1 cut(s) 316
BsoBI CYCGRG 1 cut(s) 804
Bsp119I TTCGAA 1 cut(s) 555
Bsp143I GATC 7 cut(s) 91, 331, 352, 444, 533, 670, 684
BspACI CCGC 4 cut(s) 30, 566, 658, 688
BspANI GGCC 2 cut(s) 583, 603
BspCNI CTCAG 4 cut(s) 434, 522, 654, 784
BspFNI CGCG 2 cut(s) 204, 781
BspLI GGNNCC 1 cut(s) 803
BspMAI CTGCAG 1 cut(s) 512
BspPI GGATC 2 cut(s) 99, 679
BspT104I TTCGAA 1 cut(s) 555
BspTNI GGTCTC 1 cut(s) 316
BssECI CCNNGG 2 cut(s) 372, 584
BssMI GATC 7 cut(s) 91, 331, 352, 444, 533, 670, 684
BssNI GRCGYC 1 cut(s) 771
BssT1I CCWWGG 2 cut(s) 372, 584
Bst2UI CCWGG 1 cut(s) 832
Bst4CI ACNGT 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 204
BstACI GRCGYC 1 cut(s) 771
BstBI TTCGAA 1 cut(s) 555
BstC8I GCNNGC 3 cut(s) 432, 524, 662
BstDEI CTNAG 4 cut(s) 421, 530, 641, 792
BstF5I GGATG 2 cut(s) 222, 443
BstFNI CGCG 2 cut(s) 204, 781
BstHHI GCGC 1 cut(s) 781
BstKTI GATC 7 cut(s) 94, 334, 355, 447, 536, 673, 687
BstMAI GTCTC 3 cut(s) 245, 316, 705
BstMBI GATC 7 cut(s) 91, 331, 352, 444, 533, 670, 684
BstMWI GCNNNNNNNGC 2 cut(s) 519, 600
BstNI CCWGG 1 cut(s) 832
BstNSI RCATGY 1 cut(s) 101
BstPAI GACNNNNGTC 1 cut(s) 806
BstSCI CCNGG 1 cut(s) 830
BstSFI CTRYAG 1 cut(s) 508
BstUI CGCG 2 cut(s) 204, 781
BstV1I GCAGC 5 cut(s) 268, 276, 379, 490, 522
BstX2I RGATCY 5 cut(s) 91, 331, 352, 533, 684
BstYI RGATCY 5 cut(s) 91, 331, 352, 533, 684
BsuRI GGCC 2 cut(s) 583, 603
BtsCI GGATG 2 cut(s) 222, 443
BtsI GCAGTG 1 cut(s) 338
BtsIMutI CAGTG 3 cut(s) 25, 338, 649
Cac8I GCNNGC 3 cut(s) 432, 524, 662
CaiI CAGNNNCTG 1 cut(s) 94
CfoI GCGC 1 cut(s) 781
Cfr13I GGNCC 2 cut(s) 801, 834
CseI GACGC 1 cut(s) 295
Csp6I GTAC 2 cut(s) 381, 387
CspCI CAANNNNNGTGG 2 cut(s) 625, 660
CviAII CATG 6 cut(s) 98, 344, 482, 487, 572, 692
CviQI GTAC 2 cut(s) 381, 387
DdeI CTNAG 4 cut(s) 421, 530, 641, 792
DpnI GATC 7 cut(s) 93, 333, 354, 446, 535, 672, 686
DpnII GATC 7 cut(s) 91, 331, 352, 444, 533, 670, 684
DriI GACNNNNNGTC 1 cut(s) 490
Eam1104I CTCTTC 1 cut(s) 204
Eam1105I GACNNNNNGTC 1 cut(s) 490
EarI CTCTTC 1 cut(s) 204
EciI GGCGGA 2 cut(s) 555, 677
Eco130I CCWWGG 2 cut(s) 372, 584
Eco31I GGTCTC 1 cut(s) 316
Eco47I GGWCC 2 cut(s) 801, 834
Eco57I CTGAAG 1 cut(s) 839
Eco88I CYCGRG 1 cut(s) 804
EcoRII CCWGG 1 cut(s) 830
EcoT14I CCWWGG 2 cut(s) 372, 584
ErhI CCWWGG 2 cut(s) 372, 584
FaeI CATG 6 cut(s) 101, 347, 485, 490, 575, 695
FatI CATG 6 cut(s) 97, 343, 481, 486, 571, 691
FblI GTMKAC 3 cut(s) 406, 612, 708
Fnu4HI GCNGC 6 cut(s) 282, 290, 368, 479, 511, 658
FokI GGATG 2 cut(s) 209, 450
Fsp4HI GCNGC 6 cut(s) 282, 290, 368, 479, 511, 658
FspBI CTAG 2 cut(s) 335, 585
GlaI GCGC 1 cut(s) 780
GluI GCNGC 6 cut(s) 282, 290, 368, 479, 511, 658
HaeIII GGCC 2 cut(s) 583, 603
HapII CCGG 1 cut(s) 580
HgaI GACGC 1 cut(s) 295
HhaI GCGC 1 cut(s) 781
Hin1I GRCGYC 1 cut(s) 771
Hin1II CATG 6 cut(s) 101, 347, 485, 490, 575, 695
Hin6I GCGC 1 cut(s) 779
HinP1I GCGC 1 cut(s) 779
HincII GTYRAC 2 cut(s) 407, 679
HindII GTYRAC 2 cut(s) 407, 679
HinfI GANTC 4 cut(s) 23, 491, 497, 807
HpaII CCGG 1 cut(s) 580
Hpy166II GTNNAC 4 cut(s) 407, 613, 679, 709
Hpy188I TCNGA 4 cut(s) 399, 424, 496, 502
Hpy188III TCNNGA 3 cut(s) 89, 356, 719
Hpy8I GTNNAC 4 cut(s) 407, 613, 679, 709
Hpy99I CGWCG 2 cut(s) 289, 773
HpyAV CCTTC 4 cut(s) 107, 235, 614, 725
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4IV ACGT 1 cut(s) 771
HpyCH4V TGCA 8 cut(s) 44, 97, 140, 163, 343, 367, 510, 634
HpyF10VI GCNNNNNNNGC 2 cut(s) 519, 600
HpyF3I CTNAG 4 cut(s) 421, 530, 641, 792
HpySE526I ACGT 1 cut(s) 771
Hsp92I GRCGYC 1 cut(s) 771
Hsp92II CATG 6 cut(s) 101, 347, 485, 490, 575, 695
HspAI GCGC 1 cut(s) 779
Kzo9I GATC 7 cut(s) 91, 331, 352, 444, 533, 670, 684
LmnI GCTCC 1 cut(s) 568
LpnPI CCDG 9 cut(s) 74, 192, 420, 573, 593, 659, 674, 817, 844
Lsp1109I GCAGC 5 cut(s) 268, 276, 379, 490, 522
LweI GCATC 1 cut(s) 551
MaeI CTAG 2 cut(s) 335, 585
MaeII ACGT 1 cut(s) 771
MaeIII GTNAC 2 cut(s) 71, 742
MalI GATC 7 cut(s) 93, 333, 354, 446, 535, 672, 686
MboI GATC 7 cut(s) 91, 331, 352, 444, 533, 670, 684
MboII GAAGA 6 cut(s) 53, 218, 221, 341, 454, 845
MflI RGATCY 5 cut(s) 91, 331, 352, 533, 684
MluCI AATT 5 cut(s) 174, 303, 410, 462, 839
MlyI GAGTC 2 cut(s) 500, 816
MmeI TCCRAC 1 cut(s) 779
MseI TTAA 2 cut(s) 465, 650
MspI CCGG 1 cut(s) 580
MspR9I CCNGG 1 cut(s) 832
MvaI CCWGG 1 cut(s) 832
MvnI CGCG 2 cut(s) 204, 781
MwoI GCNNNNNNNGC 2 cut(s) 519, 600
NdeII GATC 7 cut(s) 91, 331, 352, 444, 533, 670, 684
NlaIII CATG 6 cut(s) 101, 347, 485, 490, 575, 695
NlaIV GGNNCC 1 cut(s) 803
NspI RCATGY 1 cut(s) 101
NspV TTCGAA 1 cut(s) 555
PcsI WCGNNNNNNNCGW 1 cut(s) 604
PfeI GAWTC 2 cut(s) 23, 497
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 6 cut(s) 283, 291, 369, 480, 512, 659
PleI GAGTC 2 cut(s) 499, 815
PpsI GAGTC 2 cut(s) 499, 815
PshAI GACNNNNGTC 1 cut(s) 806
PshBI ATTAAT 1 cut(s) 650
Psp6I CCWGG 1 cut(s) 830
PspGI CCWGG 1 cut(s) 830
PspN4I GGNNCC 1 cut(s) 803
PspPI GGNCC 2 cut(s) 801, 834
PstI CTGCAG 1 cut(s) 512
PstNI CAGNNNCTG 1 cut(s) 94
PsuI RGATCY 5 cut(s) 91, 331, 352, 533, 684
PsyI GACNNNGTC 1 cut(s) 218
RsaI GTAC 2 cut(s) 382, 388
RsaNI GTAC 2 cut(s) 381, 387
SalI GTCGAC 1 cut(s) 405
SaqAI TTAA 2 cut(s) 465, 650
SatI GCNGC 6 cut(s) 282, 290, 368, 479, 511, 658
Sau3AI GATC 7 cut(s) 91, 331, 352, 444, 533, 670, 684
Sau96I GGNCC 2 cut(s) 801, 834
SchI GAGTC 2 cut(s) 500, 816
ScrFI CCNGG 1 cut(s) 832
SfaNI GCATC 1 cut(s) 551
SfcI CTRYAG 1 cut(s) 508
SfuI TTCGAA 1 cut(s) 555
SinI GGWCC 2 cut(s) 801, 834
SmlI CTYRAG 2 cut(s) 356, 702
SmoI CTYRAG 2 cut(s) 356, 702
Sse9I AATT 5 cut(s) 174, 303, 410, 462, 839
SsiI CCGC 4 cut(s) 30, 566, 658, 688
SspMI CTAG 2 cut(s) 335, 585
StyD4I CCNGG 1 cut(s) 830
StyI CCWWGG 2 cut(s) 372, 584
TaaI ACNGT 1 cut(s) 20
TaiI ACGT 1 cut(s) 774
TaqI TCGA 3 cut(s) 406, 447, 555
TasI AATT 5 cut(s) 174, 303, 410, 462, 839
TatI WGTACW 1 cut(s) 380
TauI GCSGC 1 cut(s) 660
TfiI GAWTC 2 cut(s) 23, 497
Tru1I TTAA 2 cut(s) 465, 650
Tru9I TTAA 2 cut(s) 465, 650
TscAI CASTG 3 cut(s) 25, 345, 649
TseI GCWGC 5 cut(s) 281, 289, 367, 478, 510
TspDTI ATGAA 3 cut(s) 134, 308, 708
TspRI CASTG 3 cut(s) 25, 345, 649
Tth111I GACNNNGTC 1 cut(s) 218
VpaK11BI GGWCC 2 cut(s) 801, 834
VspI ATTAAT 1 cut(s) 650
XapI RAATTY 1 cut(s) 839
XceI RCATGY 1 cut(s) 101
XmaJI CCTAGG 1 cut(s) 584
XmiI GTMKAC 3 cut(s) 406, 612, 708
XspI CTAG 2 cut(s) 335, 585
ZraI GACGTC 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.