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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 93 |
| AcsI | RAATTY | 1 cut(s) | 433 |
| AfaI | GTAC | 2 cut(s) | 271, 277 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 166, 266, 418 |
| AflIII | ACRYGT | 1 cut(s) | 375 |
| Alw26I | GTCTC | 2 cut(s) | 134, 205 |
| ApeKI | GCWGC | 4 cut(s) | 26, 178, 256, 367 |
| ApoI | RAATTY | 1 cut(s) | 433 |
| AsuHPI | GGTGA | 3 cut(s) | 380, 434, 439 |
| BbsI | GAAGAC | 1 cut(s) | 102 |
| BbvI | GCAGC | 4 cut(s) | 13, 165, 268, 379 |
| BccI | CCATC | 2 cut(s) | 178, 321 |
| BcoDI | GTCTC | 2 cut(s) | 134, 205 |
| BfaI | CTAG | 1 cut(s) | 224 |
| BglII | AGATCT | 2 cut(s) | 220, 241 |
| BisI | GCNGC | 4 cut(s) | 27, 179, 257, 368 |
| BlsI | GCNGC | 4 cut(s) | 28, 180, 258, 369 |
| BpiI | GAAGAC | 1 cut(s) | 102 |
| BpuEI | CTTGAG | 1 cut(s) | 266 |
| BsaI | GGTCTC | 1 cut(s) | 205 |
| BsaJI | CCNNGG | 2 cut(s) | 7, 261 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 166, 266, 418 |
| Bse1I | ACTGG | 1 cut(s) | 279 |
| BseDI | CCNNGG | 2 cut(s) | 7, 261 |
| BseGI | GGATG | 2 cut(s) | 111, 332 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 166, 266, 418 |
| BseMII | CTCAG | 1 cut(s) | 324 |
| BseNI | ACTGG | 1 cut(s) | 279 |
| BseXI | GCAGC | 4 cut(s) | 13, 165, 268, 379 |
| Bsh1236I | CGCG | 1 cut(s) | 93 |
| BsiSI | CCGG | 1 cut(s) | 68 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 166, 266, 418 |
| BsmAI | GTCTC | 2 cut(s) | 134, 205 |
| Bso31I | GGTCTC | 1 cut(s) | 205 |
| Bsp143I | GATC | 4 cut(s) | 220, 241, 333, 413 |
| Bsp19I | CCATGG | 1 cut(s) | 7 |
| BspCNI | CTCAG | 1 cut(s) | 323 |
| BspFNI | CGCG | 1 cut(s) | 93 |
| BspTNI | GGTCTC | 1 cut(s) | 205 |
| BsrI | ACTGG | 1 cut(s) | 279 |
| BssECI | CCNNGG | 2 cut(s) | 7, 261 |
| BssMI | GATC | 4 cut(s) | 220, 241, 333, 413 |
| BssT1I | CCWWGG | 2 cut(s) | 7, 261 |
| BstC8I | GCNNGC | 1 cut(s) | 321 |
| BstDEI | CTNAG | 1 cut(s) | 310 |
| BstDSI | CCRYGG | 1 cut(s) | 7 |
| BstF5I | GGATG | 2 cut(s) | 111, 332 |
| BstFNI | CGCG | 1 cut(s) | 93 |
| BstKTI | GATC | 4 cut(s) | 223, 244, 336, 416 |
| BstMAI | GTCTC | 2 cut(s) | 134, 205 |
| BstMBI | GATC | 4 cut(s) | 220, 241, 333, 413 |
| BstNSI | RCATGY | 1 cut(s) | 379 |
| BstUI | CGCG | 1 cut(s) | 93 |
| BstV1I | GCAGC | 4 cut(s) | 13, 165, 268, 379 |
| BstV2I | GAAGAC | 1 cut(s) | 102 |
| BstX2I | RGATCY | 2 cut(s) | 220, 241 |
| BstYI | RGATCY | 2 cut(s) | 220, 241 |
| BtgI | CCRYGG | 1 cut(s) | 7 |
| BtsCI | GGATG | 2 cut(s) | 111, 332 |
| BtsIMutI | CAGTG | 1 cut(s) | 423 |
| Cac8I | GCNNGC | 1 cut(s) | 321 |
| CseI | GACGC | 1 cut(s) | 184 |
| Csp6I | GTAC | 2 cut(s) | 270, 276 |
| CviAII | CATG | 4 cut(s) | 8, 233, 371, 376 |
| CviJI | RGCY | 4 cut(s) | 26, 71, 259, 319 |
| CviKI_1 | RGCY | 4 cut(s) | 26, 71, 259, 319 |
| CviQI | GTAC | 2 cut(s) | 270, 276 |
| DdeI | CTNAG | 1 cut(s) | 310 |
| DpnI | GATC | 4 cut(s) | 222, 243, 335, 415 |
| DpnII | GATC | 4 cut(s) | 220, 241, 333, 413 |
| Eco130I | CCWWGG | 2 cut(s) | 7, 261 |
| Eco31I | GGTCTC | 1 cut(s) | 205 |
| EcoT14I | CCWWGG | 2 cut(s) | 7, 261 |
| ErhI | CCWWGG | 2 cut(s) | 7, 261 |
| FaeI | CATG | 4 cut(s) | 11, 236, 374, 379 |
| FatI | CATG | 4 cut(s) | 7, 232, 370, 375 |
| FauNDI | CATATG | 1 cut(s) | 48 |
| Fnu4HI | GCNGC | 4 cut(s) | 27, 179, 257, 368 |
| FokI | GGATG | 2 cut(s) | 98, 339 |
| Fsp4HI | GCNGC | 4 cut(s) | 27, 179, 257, 368 |
| FspBI | CTAG | 1 cut(s) | 224 |
| GluI | GCNGC | 4 cut(s) | 27, 179, 257, 368 |
| HapII | CCGG | 1 cut(s) | 68 |
| HgaI | GACGC | 1 cut(s) | 184 |
| Hin1II | CATG | 4 cut(s) | 11, 236, 374, 379 |
| HpaII | CCGG | 1 cut(s) | 68 |
| HphI | GGTGA | 3 cut(s) | 380, 434, 439 |
| Hpy188I | TCNGA | 4 cut(s) | 37, 288, 313, 413 |
| Hpy188III | TCNNGA | 1 cut(s) | 245 |
| Hpy99I | CGWCG | 1 cut(s) | 178 |
| HpyAV | CCTTC | 1 cut(s) | 260 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 29, 52, 256 |
| HpyF3I | CTNAG | 1 cut(s) | 310 |
| Hsp92II | CATG | 4 cut(s) | 11, 236, 374, 379 |
| Kzo9I | GATC | 4 cut(s) | 220, 241, 333, 413 |
| LpnPI | CCDG | 4 cut(s) | 81, 228, 292, 309 |
| Lsp1109I | GCAGC | 4 cut(s) | 13, 165, 268, 379 |
| MaeI | CTAG | 1 cut(s) | 224 |
| MaeIII | GTNAC | 1 cut(s) | 427 |
| MalI | GATC | 4 cut(s) | 222, 243, 335, 415 |
| MboI | GATC | 4 cut(s) | 220, 241, 333, 413 |
| MboII | GAAGA | 3 cut(s) | 107, 230, 343 |
| MflI | RGATCY | 2 cut(s) | 220, 241 |
| MluCI | AATT | 4 cut(s) | 63, 192, 299, 433 |
| MnlI | CCTC | 7 cut(s) | 6, 89, 94, 100, 190, 309, 418 |
| MseI | TTAA | 2 cut(s) | 302, 354 |
| MspI | CCGG | 1 cut(s) | 68 |
| MvnI | CGCG | 1 cut(s) | 93 |
| NcoI | CCATGG | 1 cut(s) | 7 |
| NdeI | CATATG | 1 cut(s) | 48 |
| NdeII | GATC | 4 cut(s) | 220, 241, 333, 413 |
| NlaIII | CATG | 4 cut(s) | 11, 236, 374, 379 |
| NmuCI | GTSAC | 1 cut(s) | 427 |
| NspI | RCATGY | 1 cut(s) | 379 |
| PciI | ACATGT | 1 cut(s) | 375 |
| PflFI | GACNNNGTC | 1 cut(s) | 107 |
| PkrI | GCNGC | 4 cut(s) | 28, 180, 258, 369 |
| PscI | ACATGT | 1 cut(s) | 375 |
| PsuI | RGATCY | 2 cut(s) | 220, 241 |
| PsyI | GACNNNGTC | 1 cut(s) | 107 |
| RsaI | GTAC | 2 cut(s) | 271, 277 |
| RsaNI | GTAC | 2 cut(s) | 270, 276 |
| SaqAI | TTAA | 2 cut(s) | 302, 354 |
| SatI | GCNGC | 4 cut(s) | 27, 179, 257, 368 |
| Sau3AI | GATC | 4 cut(s) | 220, 241, 333, 413 |
| SetI | ASST | 5 cut(s) | 111, 171, 201, 271, 429 |
| SmlI | CTYRAG | 1 cut(s) | 245 |
| SmoI | CTYRAG | 1 cut(s) | 245 |
| Sse9I | AATT | 4 cut(s) | 63, 192, 299, 433 |
| SspMI | CTAG | 1 cut(s) | 224 |
| StyI | CCWWGG | 2 cut(s) | 7, 261 |
| TaqI | TCGA | 1 cut(s) | 295 |
| TasI | AATT | 4 cut(s) | 63, 192, 299, 433 |
| Tru1I | TTAA | 2 cut(s) | 302, 354 |
| Tru9I | TTAA | 2 cut(s) | 302, 354 |
| TscAI | CASTG | 1 cut(s) | 423 |
| TseFI | GTSAC | 1 cut(s) | 427 |
| TseI | GCWGC | 4 cut(s) | 26, 178, 256, 367 |
| Tsp45I | GTSAC | 1 cut(s) | 427 |
| TspDTI | ATGAA | 2 cut(s) | 197, 374 |
| TspRI | CASTG | 1 cut(s) | 423 |
| Tth111I | GACNNNGTC | 1 cut(s) | 107 |
| XapI | RAATTY | 1 cut(s) | 433 |
| XceI | RCATGY | 1 cut(s) | 379 |
| XspI | CTAG | 1 cut(s) | 224 |