Rh3AG242100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Forward (+)
25432157 .. 25433722
1566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG242100.1

Sequence Viewer

Length: 447 bp
ATGGCTACTGTACTCTCTGGTGCAGATGAGTTACATTTGCAACTTCACCAAACGATAAAAAGATTGGTGGCGAATGCCACATCCGAGTCCAAGAAGATATTTGAATCAGGAGCAGATCTCCCACAGGAATCAAAGAATGCGGTTCCCATTTCTTATCTTCCCGCAGATGATGAAGGCGAGAAGATAGTAAAAATGTTGGAGGAAAAACATGAAGTGAGACAAGCAAGAGTTATGATGTTTCCTGTTGGGGAAACTTCCTTTTCATTCCAACTTCCAGCAGATTTTCCTCTTCATCAGATTGACGTGGAAAAGTTGGTGCCCCCTGAGAGGGAATTTACTGGTACAAGTGGGTGTATCCGTAAATTTTCATTCTTTGAAAGGCTCAAGGGATGGAATATCGAGGTTAGGCAAAGACAAACTGGACGTGCCCTCGACTCGATCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

16.81

Weight (kDa)

5.83

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 316
AciI CCGC 2 cut(s) 140, 162
AcsI RAATTY 2 cut(s) 332, 362
AfaI GTAC 2 cut(s) 12, 343
AfiI CCNNNNNNNGG 2 cut(s) 327, 328
AgsI TTSAA 2 cut(s) 104, 377
AjiI CACGTC 2 cut(s) 304, 425
Alw26I GTCTC 1 cut(s) 211
ApoI RAATTY 2 cut(s) 332, 362
AsuHPI GGTGA 1 cut(s) 38
BaeGI GKGCMC 2 cut(s) 321, 430
BanI GGYRCC 1 cut(s) 316
BccI CCATC 1 cut(s) 384
BciVI GTATCC 1 cut(s) 365
BcoDI GTCTC 1 cut(s) 211
BfuI GTATCC 1 cut(s) 365
BglII AGATCT 1 cut(s) 115
BmgBI CACGTC 2 cut(s) 304, 425
BmiI GGNNCC 2 cut(s) 144, 318
BplI GAGNNNNNCTC 2 cut(s) 102, 134
BpuEI CTTGAG 1 cut(s) 368
Bsc4I CCNNNNNNNGG 2 cut(s) 327, 328
Bse1I ACTGG 2 cut(s) 343, 424
BseGI GGATG 2 cut(s) 80, 395
BseLI CCNNNNNNNGG 2 cut(s) 327, 328
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 2 cut(s) 343, 424
BseSI GKGCMC 2 cut(s) 321, 430
BsgI GTGCAG 1 cut(s) 42
BshNI GGYRCC 1 cut(s) 316
BslI CCNNNNNNNGG 2 cut(s) 327, 328
BsmAI GTCTC 1 cut(s) 211
BsmI GAATGC 2 cut(s) 79, 142
Bsp1286I GDGCHC 2 cut(s) 321, 430
Bsp143I GATC 2 cut(s) 115, 438
BspACI CCGC 2 cut(s) 140, 162
BspCNI CTCAG 1 cut(s) 316
BspLI GGNNCC 2 cut(s) 144, 318
BspT107I GGYRCC 1 cut(s) 316
BsrI ACTGG 2 cut(s) 343, 424
BssMI GATC 2 cut(s) 115, 438
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 1 cut(s) 294
BstDEI CTNAG 1 cut(s) 324
BstF5I GGATG 2 cut(s) 80, 395
BstKTI GATC 2 cut(s) 118, 441
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 2 cut(s) 115, 438
BstSLI GKGCMC 2 cut(s) 321, 430
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuI GTATCC 1 cut(s) 365
BtrI CACGTC 2 cut(s) 304, 425
BtsCI GGATG 2 cut(s) 80, 395
Csp6I GTAC 2 cut(s) 11, 342
CviAII CATG 1 cut(s) 209
CviJI RGCY 2 cut(s) 5, 382
CviKI_1 RGCY 2 cut(s) 5, 382
CviQI GTAC 2 cut(s) 11, 342
DdeI CTNAG 1 cut(s) 324
DpnI GATC 2 cut(s) 117, 440
DpnII GATC 2 cut(s) 115, 438
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
FaeI CATG 1 cut(s) 212
FaiI YATR 2 cut(s) 210, 233
FatI CATG 1 cut(s) 208
FauI CCCGC 1 cut(s) 169
FokI GGATG 2 cut(s) 67, 402
Hin1II CATG 1 cut(s) 212
HinfI GANTC 4 cut(s) 86, 104, 128, 434
HphI GGTGA 1 cut(s) 38
Hpy188I TCNGA 2 cut(s) 85, 297
Hpy188III TCNNGA 1 cut(s) 108
HpyAV CCTTC 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 2 cut(s) 303, 424
HpyCH4V TGCA 2 cut(s) 23, 40
HpyF3I CTNAG 1 cut(s) 324
HpySE526I ACGT 2 cut(s) 303, 424
Hsp92II CATG 1 cut(s) 212
Kzo9I GATC 2 cut(s) 115, 438
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 8 cut(s) 3, 93, 110, 255, 288, 324, 336, 405
MaeII ACGT 2 cut(s) 303, 424
MaeIII GTNAC 1 cut(s) 30
MalI GATC 2 cut(s) 117, 440
MboI GATC 2 cut(s) 115, 438
MboII GAAGA 4 cut(s) 106, 149, 193, 281
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 2 cut(s) 321, 430
MluCI AATT 2 cut(s) 332, 362
MlyI GAGTC 2 cut(s) 95, 428
MmeI TCCRAC 2 cut(s) 177, 292
MnlI CCTC 5 cut(s) 193, 297, 321, 394, 440
Mva1269I GAATGC 2 cut(s) 79, 142
NdeII GATC 2 cut(s) 115, 438
NlaIII CATG 1 cut(s) 212
NlaIV GGNNCC 2 cut(s) 144, 318
PctI GAATGC 2 cut(s) 79, 142
PfeI GAWTC 2 cut(s) 104, 128
PleI GAGTC 2 cut(s) 94, 428
PpsI GAGTC 2 cut(s) 94, 428
PspN4I GGNNCC 2 cut(s) 144, 318
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 2 cut(s) 12, 343
RsaNI GTAC 2 cut(s) 11, 342
Sau3AI GATC 2 cut(s) 115, 438
SchI GAGTC 2 cut(s) 95, 428
SduI GDGCHC 2 cut(s) 321, 430
SetI ASST 3 cut(s) 306, 405, 427
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 2 cut(s) 332, 362
SsiI CCGC 2 cut(s) 140, 162
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 2 cut(s) 306, 427
TaqI TCGA 3 cut(s) 399, 432, 437
TasI AATT 2 cut(s) 332, 362
TatI WGTACW 1 cut(s) 10
TfiI GAWTC 2 cut(s) 104, 128
TspDTI ATGAA 5 cut(s) 186, 225, 252, 281, 357
TspGWI ACGGA 1 cut(s) 347
XapI RAATTY 2 cut(s) 332, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.