FvH4_6g23221

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001250
Physical Location & Seq
Reverse (-)
17154757 .. 17156665
1909 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23221.t1

Sequence Viewer

Length: 624 bp
ATGTCTGTTGTACCCTCTATTACAGATAAGTTGCATTCGCAACTCCGCCAAACATTGAAGATATTGGTGGCGAAAACCACATCTGAGTTTAAACAGAAATTTACATTAAGGGAATATGTCCAAGATAATGTGTTTCCCATCTCTAGTCTTGATGATGGCAAGAAGATTGAAAAACAAAAAGACATACCAAGAGTTGAGACGTATCCTATTGGGGGAACGCTATCATTCAACCTTCCGGCAGATTATCCACTTCACTTGATTGATGTGGAAAAGGGATGGACTATCGAGATTTGGCAAAGAAAGAAAGAAGCTCACTGTAAGAAGGAAGCTCACTATCGAGATGTAATTGACTCTTTTTACCACCATGAGAGGTTTACTAAAGTTTTGCGATCAGTCCCAGAAGTTGTTGGTTTTATCCTCTATGAGGATCCAACAGCTGTCAAATTTGAAAAGAAAAAGGCAGCCCCTATGGAAGAAACTAGTAACAAAAAAGTTAAGATCGAGATGAAGCCAAGTAAAACTGAAGAAATTGGGGAACTAACTATTGATGATATTCCTTTGTGCAAAGACTTGGATGAACTTGAAGCCGATTTGGTTGCGCTCCGATGTGAGCGAAAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

24.02

Weight (kDa)

6.61

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 46
AclWI GGATC 2 cut(s) 422, 435
AcsI RAATTY 2 cut(s) 98, 443
AcuI CTGAAG 1 cut(s) 543
AfaI GTAC 1 cut(s) 12
AfiI CCNNNNNNNGG 2 cut(s) 212, 424
AgsI TTSAA 5 cut(s) 58, 170, 229, 449, 584
AhlI ACTAGT 1 cut(s) 479
AluBI AGCT 3 cut(s) 311, 329, 437
AluI AGCT 3 cut(s) 311, 329, 437
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 2 cut(s) 422, 435
ApeKI GCWGC 1 cut(s) 461
ApoI RAATTY 2 cut(s) 98, 443
AspLEI GCGC 1 cut(s) 601
BamHI GGATCC 1 cut(s) 427
BbvI GCAGC 1 cut(s) 473
BccI CCATC 3 cut(s) 146, 149, 270
BcgI CGANNNNNNTGC 2 cut(s) 578, 612
BciVI GTATCC 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 191
BcuI ACTAGT 1 cut(s) 479
BfaI CTAG 2 cut(s) 144, 480
BfuI GTATCC 1 cut(s) 213
BisI GCNGC 1 cut(s) 462
BlsI GCNGC 1 cut(s) 463
BmiI GGNNCC 1 cut(s) 429
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 424
BseGI GGATG 2 cut(s) 281, 580
BseLI CCNNNNNNNGG 2 cut(s) 212, 424
BseMII CTCAG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 473
BsiSI CCGG 1 cut(s) 236
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 2 cut(s) 212, 424
BsmAI GTCTC 1 cut(s) 191
BsmBI CGTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 380
BsmI GAATGC 1 cut(s) 34
Bsp143I GATC 3 cut(s) 389, 427, 498
BspACI CCGC 1 cut(s) 46
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 429
BspPI GGATC 2 cut(s) 422, 435
BssMI GATC 3 cut(s) 389, 427, 498
Bst4CI ACNGT 1 cut(s) 317
BstDEI CTNAG 1 cut(s) 84
BstENI CCTNNNNNAGG 1 cut(s) 422
BstF5I GGATG 2 cut(s) 281, 580
BstHHI GCGC 1 cut(s) 601
BstKTI GATC 3 cut(s) 392, 430, 501
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 3 cut(s) 389, 427, 498
BstV1I GCAGC 1 cut(s) 473
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
BsuI GTATCC 1 cut(s) 213
BtsCI GGATG 2 cut(s) 281, 580
BtsIMutI CAGTG 1 cut(s) 313
CfoI GCGC 1 cut(s) 601
Csp6I GTAC 1 cut(s) 11
CspCI CAANNNNNGTGG 2 cut(s) 237, 272
CviAII CATG 1 cut(s) 365
CviJI RGCY 6 cut(s) 311, 329, 437, 464, 511, 587
CviKI_1 RGCY 6 cut(s) 311, 329, 437, 464, 511, 587
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 1 cut(s) 84
DpnI GATC 3 cut(s) 391, 429, 500
DpnII GATC 3 cut(s) 389, 427, 498
DraI TTTAAA 1 cut(s) 91
EciI GGCGGA 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 543
EcoNI CCTNNNNNAGG 1 cut(s) 422
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 1 cut(s) 368
FaiI YATR 5 cut(s) 117, 185, 366, 423, 470
FaqI GGGAC 1 cut(s) 380
FatI CATG 1 cut(s) 364
Fnu4HI GCNGC 1 cut(s) 462
FokI GGATG 2 cut(s) 288, 587
Fsp4HI GCNGC 1 cut(s) 462
FspBI CTAG 2 cut(s) 144, 480
GlaI GCGC 1 cut(s) 600
GluI GCNGC 1 cut(s) 462
HapII CCGG 1 cut(s) 236
HhaI GCGC 1 cut(s) 601
Hin1II CATG 1 cut(s) 368
Hin6I GCGC 1 cut(s) 599
HinP1I GCGC 1 cut(s) 599
HinfI GANTC 1 cut(s) 350
HpaII CCGG 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 375
Hpy188I TCNGA 2 cut(s) 85, 605
Hpy188III TCNNGA 4 cut(s) 149, 286, 338, 502
Hpy8I GTNNAC 1 cut(s) 375
HpyAV CCTTC 2 cut(s) 242, 316
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 2 cut(s) 34, 564
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 200
Hsp92II CATG 1 cut(s) 368
HspAI GCGC 1 cut(s) 599
Kzo9I GATC 3 cut(s) 389, 427, 498
LmnI GCTCC 1 cut(s) 606
LpnPI CCDG 2 cut(s) 249, 411
Lsp1109I GCAGC 1 cut(s) 473
MaeI CTAG 2 cut(s) 144, 480
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 1 cut(s) 482
MalI GATC 3 cut(s) 391, 429, 500
MboI GATC 3 cut(s) 389, 427, 498
MboII GAAGA 4 cut(s) 70, 175, 485, 536
MflI RGATCY 1 cut(s) 427
MluCI AATT 4 cut(s) 98, 345, 443, 528
MlyI GAGTC 1 cut(s) 344
MmeI TCCRAC 1 cut(s) 455
MnlI CCTC 4 cut(s) 25, 363, 418, 428
MseI TTAA 3 cut(s) 90, 107, 495
MspA1I CMGCKG 1 cut(s) 437
MspI CCGG 1 cut(s) 236
MssI GTTTAAAC 1 cut(s) 91
Mva1269I GAATGC 1 cut(s) 34
NdeII GATC 3 cut(s) 389, 427, 498
NlaIII CATG 1 cut(s) 368
NlaIV GGNNCC 1 cut(s) 429
PctI GAATGC 1 cut(s) 34
PkrI GCNGC 1 cut(s) 463
PleI GAGTC 1 cut(s) 344
PmeI GTTTAAAC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 344
PspN4I GGNNCC 1 cut(s) 429
PsuI RGATCY 1 cut(s) 427
PvuII CAGCTG 1 cut(s) 437
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
SaqAI TTAA 3 cut(s) 90, 107, 495
SatI GCNGC 1 cut(s) 462
Sau3AI GATC 3 cut(s) 389, 427, 498
SchI GAGTC 1 cut(s) 344
SetI ASST 6 cut(s) 203, 234, 313, 331, 374, 439
SpeI ACTAGT 1 cut(s) 479
Sse9I AATT 4 cut(s) 98, 345, 443, 528
SsiI CCGC 1 cut(s) 46
SspMI CTAG 2 cut(s) 144, 480
TaaI ACNGT 1 cut(s) 317
TaiI ACGT 1 cut(s) 203
TaqI TCGA 3 cut(s) 285, 337, 501
TasI AATT 4 cut(s) 98, 345, 443, 528
Tru1I TTAA 3 cut(s) 90, 107, 495
Tru9I TTAA 3 cut(s) 90, 107, 495
TscAI CASTG 1 cut(s) 320
TseI GCWGC 1 cut(s) 461
TspDTI ATGAA 2 cut(s) 521, 591
TspRI CASTG 1 cut(s) 320
XagI CCTNNNNNAGG 1 cut(s) 422
XapI RAATTY 2 cut(s) 98, 443
XspI CTAG 2 cut(s) 144, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.