Rmu_sc0001380.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001380.1
OG0001250
Physical Location & Seq
Forward (+)
78786 .. 81354
2569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001380.1_g000014.1.cds

Sequence Viewer

Length: 1206 bp
atgtcatcaccaaggtcctcctcctcttcagcatgtttatcgccatcatcgaccggtagcacttcacttgcatcctccgctacaactgcaccggtttcctcaccacccacgtttgacacggtactgttgtcatcctcatgtgagccggcagtgtcacaaccaccccaatttgtaacaccagtttcaccgacgccgttcgaattagaccagatcatgggcgactttccacgggcgcaaatggtggactaccatgagatacaaagacgccaagtggtctctccgtctccttcttcaaaggaattggttctttataagccggagacacagcgccaagaaaacctgcaggaacgacttggagaagtcgtcaaggatgctgtttataaagaggtgactgagttgatgaaacaagcacaggcagagatagcgaaggaacaaaaggctgagcacgacagtggcagaactagcatggaagaggcctctgtatttacgagggaagagggtaaactgatgatagtagtggcagagcaggctgaggctaaccatgagagccctaaagtaaccaacacggaaccggctgtcactacaaggccaggccgatcggccaccaagcaagtggcgcatatttccaatgtgtccttccaaattcctgatgatttcgatgttgacgatgacacactaaacagagggccttttcaggaagcagctgatgagaaacctcaaaatatattaaaggatgaatactcaagcatgtcatctgaaggcgctgccagtgattctgaagaatatggggagtcgtacgaggagatgttttttcgcgtagcctggagtaaccagataaacggcactagagaggtggtgccgttattaagcgaatgggaaaaattcaaggctgcgaaaaagaaggctagaactacaccatgtaaaccagaagttggtacacccaacttggatgctgaagctatggagacagcaagcgccttgatgggactagctgagaatgaaagttcggtgaggataaggccgaaggcttgtaatgataggttggagttttcagctcatcagactggtggttctcctctctctctagaatctgatgaaggggtctctaacgtggttgcacgttggatcctcttggtagtgggaggcctcgacttccttctctttgtgtctggcggtgctggacctgttctgggcttccggcactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

401

Amino Acids

43.64

Weight (kDa)

4.77

Isoelectric Point (pI)

56.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 312, 381
Acc36I ACCTGC 1 cut(s) 348
AccB1I GGYRCC 1 cut(s) 856
AccB7I CCANNNNNTGG 2 cut(s) 214, 932
AccII CGCG 1 cut(s) 816
AciI CCGC 2 cut(s) 78, 1173
AclWI GGATC 2 cut(s) 1120, 1133
AcoI YGGCCR 1 cut(s) 600
AcsI RAATTY 2 cut(s) 642, 881
AcuI CTGAAG 4 cut(s) 12, 777, 798, 975
AcyI GRCGYC 2 cut(s) 191, 265
AfaI GTAC 3 cut(s) 123, 797, 937
AfiI CCNNNNNNNGG 3 cut(s) 214, 932, 1190
AgeI ACCGGT 2 cut(s) 53, 91
AgsI TTSAA 2 cut(s) 294, 886
AjnI CCWGG 2 cut(s) 589, 821
AjuI GAANNNNNNNTTGG 2 cut(s) 620, 652
AleI CACNNNNGTG 1 cut(s) 450
AluBI AGCT 4 cut(s) 704, 959, 992, 1055
AluI AGCT 4 cut(s) 704, 959, 992, 1055
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 5 cut(s) 280, 288, 314, 959, 1108
AlwI GGATC 2 cut(s) 1120, 1133
AoxI GGCC 7 cut(s) 474, 587, 592, 600, 686, 1019, 1144
ApeKI GCWGC 3 cut(s) 701, 764, 890
ApoI RAATTY 2 cut(s) 642, 881
AsiGI ACCGGT 2 cut(s) 53, 91
Asp700I GAANNNNTTC 1 cut(s) 303
AspLEI GCGC 5 cut(s) 235, 330, 619, 764, 977
AspS9I GGNCC 3 cut(s) 15, 686, 1181
AsuHPI GGTGA 4 cut(s) 93, 177, 400, 1021
AsuII TTCGAA 1 cut(s) 198
AvaII GGWCC 2 cut(s) 15, 1181
BaeI ACNNNNGTAYC 2 cut(s) 113, 146
BamHI GGATCC 1 cut(s) 1125
BanI GGYRCC 1 cut(s) 856
BanII GRGCYC 1 cut(s) 551
Bbv12I GWGCWC 1 cut(s) 447
BbvCI CCTCAGC 1 cut(s) 531
BbvI GCAGC 3 cut(s) 713, 751, 877
BccI CCATC 2 cut(s) 52, 976
BceAI ACGGC 3 cut(s) 178, 844, 856
BcgI CGANNNNNNTGC 2 cut(s) 21, 55
BciT130I CCWGG 2 cut(s) 591, 823
BcoDI GTCTC 5 cut(s) 280, 288, 314, 959, 1108
BfaI CTAG 5 cut(s) 462, 846, 906, 989, 1085
BfmI CTRYAG 1 cut(s) 341
BfoI RGCGCY 3 cut(s) 331, 765, 978
BfuAI ACCTGC 1 cut(s) 348
BisI GCNGC 3 cut(s) 702, 765, 891
BlpI GCTNAGC 1 cut(s) 441
BlsI GCNGC 3 cut(s) 703, 766, 892
Bme1390I CCNGG 2 cut(s) 591, 823
Bme18I GGWCC 2 cut(s) 15, 1181
BmgT120I GGNCC 3 cut(s) 15, 686, 1181
BmiI GGNNCC 3 cut(s) 570, 858, 1127
BmrFI CCNGG 2 cut(s) 591, 823
BmsI GCATC 3 cut(s) 80, 361, 940
BpmI CTGGAG 1 cut(s) 844
Bpu10I CCTNAGC 1 cut(s) 531
Bpu1102I GCTNAGC 1 cut(s) 441
Bpu14I TTCGAA 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 727
BsaHI GRCGYC 2 cut(s) 191, 265
BsaI GGTCTC 2 cut(s) 280, 1108
BsaJI CCNNGG 2 cut(s) 11, 227
BsaWI WCCGGW 2 cut(s) 53, 91
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 932, 1190
Bse118I RCCGGY 4 cut(s) 53, 91, 145, 571
Bse1I ACTGG 3 cut(s) 179, 768, 1069
BseBI CCWGG 2 cut(s) 591, 823
BseDI CCNNGG 2 cut(s) 11, 227
BseGI GGATG 5 cut(s) 71, 131, 376, 739, 955
BseLI CCNNNNNNNGG 3 cut(s) 214, 932, 1190
BseMII CTCAG 4 cut(s) 384, 432, 522, 984
BseNI ACTGG 3 cut(s) 179, 768, 1069
BseRI GAGGAG 4 cut(s) 10, 13, 815, 1065
BseXI GCAGC 3 cut(s) 713, 751, 877
BsgI GTGCAG 1 cut(s) 72
Bsh1236I CGCG 1 cut(s) 816
Bsh1285I CGRYCG 2 cut(s) 54, 599
BshFI GGCC 7 cut(s) 476, 589, 594, 602, 688, 1021, 1146
BshNI GGYRCC 1 cut(s) 856
BshTI ACCGGT 2 cut(s) 53, 91
BsiEI CGRYCG 2 cut(s) 54, 599
BsiHKAI GWGCWC 1 cut(s) 447
BsiSI CCGG 6 cut(s) 54, 92, 146, 317, 572, 1198
BsiWI CGTACG 1 cut(s) 795
BslFI GGGAC 1 cut(s) 999
BslI CCNNNNNNNGG 3 cut(s) 214, 932, 1190
BsmAI GTCTC 5 cut(s) 280, 288, 314, 959, 1108
BsmBI CGTCTC 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 999
BsnI GGCC 7 cut(s) 476, 589, 594, 602, 688, 1021, 1146
Bso31I GGTCTC 2 cut(s) 280, 1108
Bsp119I TTCGAA 1 cut(s) 198
Bsp1286I GDGCHC 2 cut(s) 447, 551
Bsp143I GATC 3 cut(s) 210, 596, 1125
Bsp1720I GCTNAGC 1 cut(s) 441
BspACI CCGC 2 cut(s) 78, 1173
BspANI GGCC 7 cut(s) 476, 589, 594, 602, 688, 1021, 1146
BspCNI CTCAG 4 cut(s) 385, 433, 523, 985
BspFNI CGCG 1 cut(s) 816
BspLI GGNNCC 3 cut(s) 570, 858, 1127
BspMAI CTGCAG 1 cut(s) 345
BspMI ACCTGC 1 cut(s) 348
BspPI GGATC 2 cut(s) 1120, 1133
BspT104I TTCGAA 1 cut(s) 198
BspT107I GGYRCC 1 cut(s) 856
BspTNI GGTCTC 2 cut(s) 280, 1108
BsrFI RCCGGY 4 cut(s) 53, 91, 145, 571
BsrI ACTGG 3 cut(s) 179, 768, 1069
BssAI RCCGGY 4 cut(s) 53, 91, 145, 571
BssECI CCNNGG 2 cut(s) 11, 227
BssMI GATC 3 cut(s) 210, 596, 1125
BssNI GRCGYC 2 cut(s) 191, 265
BssT1I CCWWGG 1 cut(s) 11
Bst2UI CCWGG 2 cut(s) 591, 823
Bst4CI ACNGT 3 cut(s) 121, 126, 452
Bst6I CTCTTC 3 cut(s) 31, 465, 489
BstACI GRCGYC 2 cut(s) 191, 265
BstBI TTCGAA 1 cut(s) 198
BstC8I GCNNGC 3 cut(s) 147, 528, 973
BstDEI CTNAG 4 cut(s) 393, 441, 531, 993
BstDSI CCRYGG 1 cut(s) 227
BstF5I GGATG 5 cut(s) 71, 131, 376, 739, 955
BstFNI CGCG 1 cut(s) 816
BstH2I RGCGCY 3 cut(s) 331, 765, 978
BstHHI GCGC 5 cut(s) 235, 330, 619, 764, 977
BstKTI GATC 3 cut(s) 213, 599, 1128
BstMAI GTCTC 5 cut(s) 280, 288, 314, 959, 1108
BstMBI GATC 3 cut(s) 210, 596, 1125
BstMCI CGRYCG 2 cut(s) 54, 599
BstMWI GCNNNNNNNGC 6 cut(s) 77, 86, 422, 462, 527, 616
BstNI CCWGG 2 cut(s) 591, 823
BstNSI RCATGY 2 cut(s) 36, 751
BstSCI CCNGG 2 cut(s) 589, 821
BstSFI CTRYAG 1 cut(s) 341
BstUI CGCG 1 cut(s) 816
BstV1I GCAGC 3 cut(s) 713, 751, 877
BstX2I RGATCY 1 cut(s) 1125
BstXI CCANNNNNNTGG 1 cut(s) 613
BstYI RGATCY 1 cut(s) 1125
BsuRI GGCC 7 cut(s) 476, 589, 594, 602, 688, 1021, 1146
BtgI CCRYGG 1 cut(s) 227
BtsCI GGATG 5 cut(s) 71, 131, 376, 739, 955
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 4 cut(s) 156, 457, 775, 1201
BveI ACCTGC 1 cut(s) 348
Cac8I GCNNGC 3 cut(s) 147, 528, 973
CfoI GCGC 5 cut(s) 235, 330, 619, 764, 977
Cfr10I RCCGGY 4 cut(s) 53, 91, 145, 571
Cfr13I GGNCC 3 cut(s) 15, 686, 1181
CseI GACGC 2 cut(s) 199, 273
Csp6I GTAC 3 cut(s) 122, 796, 936
CspAI ACCGGT 2 cut(s) 53, 91
CviAII CATG 8 cut(s) 33, 138, 214, 251, 466, 542, 748, 918
CviQI GTAC 3 cut(s) 122, 796, 936
DdeI CTNAG 4 cut(s) 393, 441, 531, 993
DpnI GATC 3 cut(s) 212, 598, 1127
DpnII GATC 3 cut(s) 210, 596, 1125
EaeI YGGCCR 1 cut(s) 600
Eam1104I CTCTTC 3 cut(s) 31, 465, 489
EarI CTCTTC 3 cut(s) 31, 465, 489
Eco130I CCWWGG 1 cut(s) 11
Eco147I AGGCCT 2 cut(s) 476, 1146
Eco24I GRGCYC 1 cut(s) 551
Eco31I GGTCTC 2 cut(s) 280, 1108
Eco47I GGWCC 2 cut(s) 15, 1181
Eco57I CTGAAG 4 cut(s) 12, 777, 798, 975
EcoO109I RGGNCCY 2 cut(s) 15, 686
EcoRII CCWGG 2 cut(s) 589, 821
EcoT14I CCWWGG 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 551
ErhI CCWWGG 1 cut(s) 11
Esp3I CGTCTC 1 cut(s) 288
FaeI CATG 8 cut(s) 36, 141, 217, 254, 469, 545, 751, 921
FaqI GGGAC 1 cut(s) 999
FatI CATG 8 cut(s) 32, 137, 213, 250, 465, 541, 747, 917
Fnu4HI GCNGC 3 cut(s) 702, 765, 891
FokI GGATG 5 cut(s) 58, 118, 383, 746, 962
FriOI GRGCYC 1 cut(s) 551
Fsp4HI GCNGC 3 cut(s) 702, 765, 891
FspBI CTAG 5 cut(s) 462, 846, 906, 989, 1085
GlaI GCGC 5 cut(s) 234, 329, 618, 763, 976
GluI GCNGC 3 cut(s) 702, 765, 891
GsuI CTGGAG 1 cut(s) 844
HaeII RGCGCY 3 cut(s) 331, 765, 978
HaeIII GGCC 7 cut(s) 476, 589, 594, 602, 688, 1021, 1146
HapII CCGG 6 cut(s) 54, 92, 146, 317, 572, 1198
HgaI GACGC 2 cut(s) 199, 273
HhaI GCGC 5 cut(s) 235, 330, 619, 764, 977
Hin1I GRCGYC 2 cut(s) 191, 265
Hin1II CATG 8 cut(s) 36, 141, 217, 254, 469, 545, 751, 921
Hin6I GCGC 5 cut(s) 233, 328, 617, 762, 975
HinP1I GCGC 5 cut(s) 233, 328, 617, 762, 975
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HinfI GANTC 3 cut(s) 773, 791, 1088
HpaII CCGG 6 cut(s) 54, 92, 146, 317, 572, 1198
HphI GGTGA 4 cut(s) 93, 177, 400, 1021
Hpy166II GTNNAC 5 cut(s) 244, 503, 664, 923, 938
Hpy188I TCNGA 4 cut(s) 757, 778, 1062, 1093
Hpy188III TCNNGA 3 cut(s) 647, 695, 1085
Hpy8I GTNNAC 5 cut(s) 244, 503, 664, 923, 938
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 8 cut(s) 297, 421, 646, 752, 895, 1018, 1091, 1166
HpyCH4III ACNGT 3 cut(s) 121, 126, 452
HpyCH4IV ACGT 3 cut(s) 110, 1110, 1120
HpyCH4V TGCA 4 cut(s) 71, 89, 343, 1118
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 86, 422, 462, 527, 616
HpyF3I CTNAG 4 cut(s) 393, 441, 531, 993
HpySE526I ACGT 3 cut(s) 110, 1110, 1120
Hsp92I GRCGYC 2 cut(s) 191, 265
Hsp92II CATG 8 cut(s) 36, 141, 217, 254, 469, 545, 751, 921
HspAI GCGC 5 cut(s) 233, 328, 617, 762, 975
KroI GCCGGC 1 cut(s) 145
KroNI GCCGGC 1 cut(s) 147
Kzo9I GATC 3 cut(s) 210, 596, 1125
Lsp1109I GCAGC 3 cut(s) 713, 751, 877
LweI GCATC 3 cut(s) 80, 361, 940
MaeI CTAG 5 cut(s) 462, 846, 906, 989, 1085
MaeII ACGT 3 cut(s) 110, 1110, 1120
MaeIII GTNAC 6 cut(s) 153, 172, 388, 556, 577, 827
MalI GATC 3 cut(s) 212, 598, 1127
MboI GATC 3 cut(s) 210, 596, 1125
MboII GAAGA 5 cut(s) 18, 282, 482, 506, 791
MflI RGATCY 1 cut(s) 1125
MhlI GDGCHC 2 cut(s) 447, 551
MluCI AATT 5 cut(s) 167, 200, 299, 642, 881
MlyI GAGTC 1 cut(s) 800
MmeI TCCRAC 2 cut(s) 1023, 1103
MroNI GCCGGC 1 cut(s) 145
MroXI GAANNNNTTC 1 cut(s) 303
MseI TTAA 2 cut(s) 728, 866
MslI CAYNNNNRTG 2 cut(s) 136, 450
MspA1I CMGCKG 1 cut(s) 704
MspI CCGG 6 cut(s) 54, 92, 146, 317, 572, 1198
MspR9I CCNGG 2 cut(s) 591, 823
MvaI CCWGG 2 cut(s) 591, 823
MvnI CGCG 1 cut(s) 816
MwoI GCNNNNNNNGC 6 cut(s) 77, 86, 422, 462, 527, 616
NaeI GCCGGC 1 cut(s) 147
NdeII GATC 3 cut(s) 210, 596, 1125
NgoMIV GCCGGC 1 cut(s) 145
NlaIII CATG 8 cut(s) 36, 141, 217, 254, 469, 545, 751, 921
NlaIV GGNNCC 3 cut(s) 570, 858, 1127
NmuCI GTSAC 3 cut(s) 153, 388, 577
NspI RCATGY 2 cut(s) 36, 751
NspV TTCGAA 1 cut(s) 198
OliI CACNNNNGTG 1 cut(s) 450
PceI AGGCCT 2 cut(s) 476, 1146
PcsI WCGNNNNNNNCGW 2 cut(s) 47, 663
PdiI GCCGGC 1 cut(s) 147
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 2 cut(s) 773, 1088
Pfl23II CGTACG 1 cut(s) 795
PflMI CCANNNNNTGG 2 cut(s) 214, 932
PinAI ACCGGT 2 cut(s) 53, 91
PkrI GCNGC 3 cut(s) 703, 766, 892
Ple19I CGATCG 1 cut(s) 599
PleI GAGTC 1 cut(s) 799
PpsI GAGTC 1 cut(s) 799
PpuMI RGGWCCY 1 cut(s) 15
PsiI TTATAA 2 cut(s) 312, 381
Psp5II RGGWCCY 1 cut(s) 15
Psp6I CCWGG 2 cut(s) 589, 821
PspGI CCWGG 2 cut(s) 589, 821
PspLI CGTACG 1 cut(s) 795
PspN4I GGNNCC 3 cut(s) 570, 858, 1127
PspPI GGNCC 3 cut(s) 15, 686, 1181
PspPPI RGGWCCY 1 cut(s) 15
PstI CTGCAG 1 cut(s) 345
PsuI RGATCY 1 cut(s) 1125
PvuI CGATCG 1 cut(s) 599
PvuII CAGCTG 1 cut(s) 704
RsaI GTAC 3 cut(s) 123, 797, 937
RsaNI GTAC 3 cut(s) 122, 796, 936
RseI CAYNNNNRTG 2 cut(s) 136, 450
SaqAI TTAA 2 cut(s) 728, 866
SatI GCNGC 3 cut(s) 702, 765, 891
Sau3AI GATC 3 cut(s) 210, 596, 1125
Sau96I GGNCC 3 cut(s) 15, 686, 1181
SbfI CCTGCAGG 1 cut(s) 345
SchI GAGTC 1 cut(s) 800
ScrFI CCNGG 2 cut(s) 591, 823
SdaI CCTGCAGG 1 cut(s) 345
SduI GDGCHC 2 cut(s) 447, 551
SfaNI GCATC 3 cut(s) 80, 361, 940
SfcI CTRYAG 1 cut(s) 341
SfuI TTCGAA 1 cut(s) 198
SinI GGWCC 2 cut(s) 15, 1181
SmiMI CAYNNNNRTG 2 cut(s) 136, 450
SmlI CTYRAG 1 cut(s) 742
SmoI CTYRAG 1 cut(s) 742
Sse8387I CCTGCAGG 1 cut(s) 345
Sse9I AATT 5 cut(s) 167, 200, 299, 642, 881
SseBI AGGCCT 2 cut(s) 476, 1146
SsiI CCGC 2 cut(s) 78, 1173
SspMI CTAG 5 cut(s) 462, 846, 906, 989, 1085
StuI AGGCCT 2 cut(s) 476, 1146
StyD4I CCNGG 2 cut(s) 589, 821
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 3 cut(s) 121, 126, 452
TaiI ACGT 3 cut(s) 113, 1113, 1123
TaqI TCGA 4 cut(s) 50, 198, 657, 1149
TasI AATT 5 cut(s) 167, 200, 299, 642, 881
TfiI GAWTC 2 cut(s) 773, 1088
Tru1I TTAA 2 cut(s) 728, 866
Tru9I TTAA 2 cut(s) 728, 866
TscAI CASTG 3 cut(s) 156, 457, 775
TseFI GTSAC 3 cut(s) 153, 388, 577
TseI GCWGC 3 cut(s) 701, 764, 890
Tsp45I GTSAC 3 cut(s) 153, 388, 577
TspDTI ATGAA 4 cut(s) 416, 750, 1014, 1110
TspGWI ACGGA 2 cut(s) 270, 581
TspRI CASTG 3 cut(s) 156, 457, 775
Van91I CCANNNNNTGG 2 cut(s) 214, 932
VpaK11BI GGWCC 2 cut(s) 15, 1181
XapI RAATTY 2 cut(s) 642, 881
XbaI TCTAGA 1 cut(s) 1084
XceI RCATGY 2 cut(s) 36, 751
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XmnI GAANNNNTTC 1 cut(s) 303
XspI CTAG 5 cut(s) 462, 846, 906, 989, 1085
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.