Rh4CG035100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001250
Physical Location & Seq
Reverse (-)
7201781 .. 7204251
2471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG035100.1

Sequence Viewer

Length: 1296 bp
ATGGTATCACCCAGATCCTCCACTTCAGCATGGTTGTCCCCATCATCGACTAGTAGCACTTCACTTGCATCCTCGGCTACAACTGCACCGGTTCCCTTACCACCCAAGTTTGACACGGTACTATCGTCATCGCCATGTCAGCCGGTAGTGTCACCACCACCCCAATCTGTAGCACCGGTTTCACAGAAGCCGTTCGATTTAGATCAGGTCATGGGCAACTTTCCACGGGCGCAAATAGTGGACTACCATGAGACACAAAGACGCCAAGTGGTCTCTCCATCTCCTTCTTCAAAGGAATTGGTTCTTTATAAGCCGGAGACACAGCGACAAGAAAATCTACAGGAACGACTTGGGCAAGTCATCAAGGATCTTGTTCATGTAACAATGTTTGCCCTAGAAACCCCGAAAGAGGTGACCGAGTTGATGAAACAAGCAGAGGCGGAGATAGCGAACGAACGAAAGGCTGAGCATTACAGTGGCAGAAGTAGCATGGAAGAGGCGTCTGAGTCAACGAAGGAAGACAATAAACTGATGATAGTAGCGGTAGAGGAGGCTCAGGCTGACCATGAGAGCCCTAAAATAACGAACACGGAACCGACCTTCACTACCAGGCCAGTCCGATCAGCCACCAAACTAATGGCCCATATTTCCAATGTGTCTTTCCAAATGCCTGATGATTTCGAAGTTGACGATGACACAATAAACGAGTTTGTGCCTGATGATGAAGTGCTCAGGGAAATTACTGCTCAAGGTAGGAAAAAATATAGTTTCTTTGACAGACTCCATGGATGGAAAATGGAGTGTAGATTAAGACTGAATGGCGTTCGACAATTCGATAAGTATTTCACACATGTTCAATCGAAGATTGTGACGAGATCAATTCCTGAAGTTGTGAGGTTTATCCTTTACGAGGTGAGCCCTAAACAAATGAGGGAAGCCAACAGCAAACGTAAATCGATAGATTTTTGGGAGCCAGCTAATGAGAGCCATAAAAATATATTAAAGGATGAATACCCAAGTATGTCATCTGAAGGCGCTGCTGGTGATTTTGAAGAAGAGGAGGTGTCGTACGTGCAGATGTTTCTTCGCGTAGCCTGGAGTAACCTGATGAACGGCACTGCAGAGGAGGTGCCATTGTTAAGTGAATGGGAAAAATTCAAGGCTGCAAAAAAGAAGGCCAGAACTACACCTTGCAAACCAGAGGTTGGTACATCCAACTTGGATGCTGAAGCTGTAGAGACAGCAAACGCATTGATGGGACTAGCTGACGATGAAATGAATGATGAAGGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook

Protein Analysis

431

Amino Acids

48.5

Weight (kDa)

5.06

Isoelectric Point (pI)

57.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
AccB1I GGYRCC 1 cut(s) 1129
AccB7I CCANNNNNTGG 1 cut(s) 1205
AccII CGCG 1 cut(s) 1089
AciI CCGC 2 cut(s) 440, 542
AclWI GGATC 2 cut(s) 9, 375
AcsI RAATTY 1 cut(s) 1154
AcuI CTGAAG 4 cut(s) 9, 906, 1050, 1248
AcyI GRCGYC 2 cut(s) 262, 500
AfaI GTAC 3 cut(s) 120, 1070, 1210
AfiI CCNNNNNNNGG 3 cut(s) 409, 910, 1205
AflIII ACRYGT 1 cut(s) 850
AgeI ACCGGT 2 cut(s) 88, 175
AgsI TTSAA 4 cut(s) 291, 857, 1052, 1159
AhlI ACTAGT 1 cut(s) 50
AjnI CCWGG 2 cut(s) 608, 1094
AjuI GAANNNNNNNTTGG 2 cut(s) 644, 676
AluBI AGCT 3 cut(s) 977, 1232, 1265
AluI AGCT 3 cut(s) 977, 1232, 1265
Alw21I GWGCWC 1 cut(s) 732
Alw26I GTCTC 4 cut(s) 245, 277, 311, 1232
AlwI GGATC 2 cut(s) 9, 375
AoxI GGCC 3 cut(s) 611, 639, 1176
ApeKI GCWGC 2 cut(s) 1037, 1163
ApoI RAATTY 1 cut(s) 1154
AsiGI ACCGGT 2 cut(s) 88, 175
Asp700I GAANNNNTTC 2 cut(s) 191, 300
AspLEI GCGC 2 cut(s) 232, 1037
AspS9I GGNCC 1 cut(s) 640
AsuHPI GGTGA 4 cut(s) 144, 424, 925, 1055
AsuII TTCGAA 1 cut(s) 681
BaeI ACNNNNGTAYC 2 cut(s) 110, 143
BanI GGYRCC 1 cut(s) 1129
BanII GRGCYC 2 cut(s) 575, 920
BbsI GAAGAC 1 cut(s) 525
Bbv12I GWGCWC 1 cut(s) 732
BbvI GCAGC 2 cut(s) 1024, 1150
BccI CCATC 4 cut(s) 49, 286, 783, 1249
BceAI ACGGC 2 cut(s) 175, 1129
BciT130I CCWGG 2 cut(s) 610, 1096
BcoDI GTCTC 4 cut(s) 245, 277, 311, 1232
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 3 cut(s) 51, 395, 1262
BfmI CTRYAG 4 cut(s) 168, 338, 1119, 1233
BfoI RGCGCY 1 cut(s) 1038
BisI GCNGC 2 cut(s) 1038, 1164
BlpI GCTNAGC 1 cut(s) 465
BlsI GCNGC 2 cut(s) 1039, 1165
Bme1390I CCNGG 2 cut(s) 610, 1096
BmgT120I GGNCC 1 cut(s) 640
BmiI GGNNCC 4 cut(s) 93, 594, 972, 1131
BmrFI CCNGG 2 cut(s) 610, 1096
BmsI GCATC 2 cut(s) 77, 1213
BpiI GAAGAC 1 cut(s) 525
BpmI CTGGAG 1 cut(s) 1117
Bpu10I CCTNAGC 2 cut(s) 555, 731
Bpu1102I GCTNAGC 1 cut(s) 465
Bpu14I TTCGAA 1 cut(s) 681
BpuEI CTTGAG 1 cut(s) 732
Bsa29I ATCGAT 1 cut(s) 956
BsaAI YACGTR 1 cut(s) 1072
BsaBI GATNNNNATC 1 cut(s) 201
BsaHI GRCGYC 2 cut(s) 262, 500
BsaI GGTCTC 1 cut(s) 277
BsaJI CCNNGG 3 cut(s) 72, 224, 784
BsaWI WCCGGW 2 cut(s) 88, 175
BsaXI ACNNNNNCTCC 2 cut(s) 1052, 1082
Bsc4I CCNNNNNNNGG 3 cut(s) 409, 910, 1205
Bse118I RCCGGY 3 cut(s) 88, 142, 175
Bse1I ACTGG 1 cut(s) 614
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 2 cut(s) 610, 1096
BseCI ATCGAT 1 cut(s) 956
BseDI CCNNGG 3 cut(s) 72, 224, 784
BseGI GGATG 5 cut(s) 68, 794, 1012, 1211, 1228
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 3 cut(s) 409, 910, 1205
BseMII CTCAG 4 cut(s) 456, 495, 569, 745
BseNI ACTGG 1 cut(s) 614
BseRI GAGGAG 3 cut(s) 563, 1073, 1139
BseXI GCAGC 2 cut(s) 1024, 1150
BsgI GTGCAG 2 cut(s) 69, 1094
Bsh1236I CGCG 1 cut(s) 1089
BshFI GGCC 3 cut(s) 613, 641, 1178
BshNI GGYRCC 1 cut(s) 1129
BshTI ACCGGT 2 cut(s) 88, 175
BshVI ATCGAT 1 cut(s) 956
BsiHKAI GWGCWC 1 cut(s) 732
BsiSI CCGG 4 cut(s) 89, 143, 176, 314
BsiWI CGTACG 1 cut(s) 1068
BslFI GGGAC 2 cut(s) 22, 1272
BslI CCNNNNNNNGG 3 cut(s) 409, 910, 1205
BsmAI GTCTC 4 cut(s) 245, 277, 311, 1232
BsmFI GGGAC 2 cut(s) 22, 1272
BsnI GGCC 3 cut(s) 613, 641, 1178
Bso31I GGTCTC 1 cut(s) 277
Bsp119I TTCGAA 1 cut(s) 681
Bsp1286I GDGCHC 3 cut(s) 575, 732, 920
Bsp143I GATC 5 cut(s) 14, 202, 367, 620, 875
Bsp1720I GCTNAGC 1 cut(s) 465
Bsp19I CCATGG 1 cut(s) 784
BspACI CCGC 2 cut(s) 440, 542
BspANI GGCC 3 cut(s) 613, 641, 1178
BspCNI CTCAG 4 cut(s) 457, 496, 568, 744
BspDI ATCGAT 1 cut(s) 956
BspFNI CGCG 1 cut(s) 1089
BspLI GGNNCC 4 cut(s) 93, 594, 972, 1131
BspMAI CTGCAG 1 cut(s) 1123
BspPI GGATC 2 cut(s) 9, 375
BspT104I TTCGAA 1 cut(s) 681
BspT107I GGYRCC 1 cut(s) 1129
BspTNI GGTCTC 1 cut(s) 277
BsrFI RCCGGY 3 cut(s) 88, 142, 175
BsrI ACTGG 1 cut(s) 614
BssAI RCCGGY 3 cut(s) 88, 142, 175
BssECI CCNNGG 3 cut(s) 72, 224, 784
BssMI GATC 5 cut(s) 14, 202, 367, 620, 875
BssNI GRCGYC 2 cut(s) 262, 500
BssT1I CCWWGG 1 cut(s) 784
Bst2UI CCWGG 2 cut(s) 610, 1096
Bst4CI ACNGT 2 cut(s) 118, 476
Bst6I CTCTTC 2 cut(s) 489, 1050
BstACI GRCGYC 2 cut(s) 262, 500
BstBAI YACGTR 1 cut(s) 1072
BstBI TTCGAA 1 cut(s) 681
BstC8I GCNNGC 1 cut(s) 975
BstDEI CTNAG 4 cut(s) 465, 504, 555, 731
BstDSI CCRYGG 2 cut(s) 224, 784
BstEII GGTNACC 1 cut(s) 412
BstENI CCTNNNNNAGG 1 cut(s) 908
BstF5I GGATG 5 cut(s) 68, 794, 1012, 1211, 1228
BstFNI CGCG 1 cut(s) 1089
BstH2I RGCGCY 1 cut(s) 1038
BstHHI GCGC 2 cut(s) 232, 1037
BstKTI GATC 5 cut(s) 17, 205, 370, 623, 878
BstMAI GTCTC 4 cut(s) 245, 277, 311, 1232
BstMBI GATC 5 cut(s) 14, 202, 367, 620, 875
BstMWI GCNNNNNNNGC 5 cut(s) 74, 83, 139, 446, 486
BstNI CCWGG 2 cut(s) 610, 1096
BstNSI RCATGY 1 cut(s) 854
BstPI GGTNACC 1 cut(s) 412
BstSCI CCNGG 2 cut(s) 608, 1094
BstSFI CTRYAG 4 cut(s) 168, 338, 1119, 1233
BstUI CGCG 1 cut(s) 1089
BstV1I GCAGC 2 cut(s) 1024, 1150
BstV2I GAAGAC 1 cut(s) 525
BstX2I RGATCY 2 cut(s) 14, 367
BstXI CCANNNNNNTGG 1 cut(s) 637
BstYI RGATCY 2 cut(s) 14, 367
Bsu15I ATCGAT 1 cut(s) 956
BsuRI GGCC 3 cut(s) 613, 641, 1178
BsuTUI ATCGAT 1 cut(s) 956
BtgI CCRYGG 2 cut(s) 224, 784
BtgZI GCGATG 1 cut(s) 114
BtsCI GGATG 5 cut(s) 68, 794, 1012, 1211, 1228
BtsI GCAGTG 1 cut(s) 1116
BtsIMutI CAGTG 2 cut(s) 481, 1116
Cac8I GCNNGC 1 cut(s) 975
CfoI GCGC 2 cut(s) 232, 1037
Cfr10I RCCGGY 3 cut(s) 88, 142, 175
Cfr13I GGNCC 1 cut(s) 640
ClaI ATCGAT 1 cut(s) 956
CseI GACGC 2 cut(s) 270, 489
Csp6I GTAC 3 cut(s) 119, 1069, 1209
CspAI ACCGGT 2 cut(s) 88, 175
CviAII CATG 9 cut(s) 30, 135, 211, 248, 377, 490, 566, 785, 851
CviQI GTAC 3 cut(s) 119, 1069, 1209
DdeI CTNAG 4 cut(s) 465, 504, 555, 731
DpnI GATC 5 cut(s) 16, 204, 369, 622, 877
DpnII GATC 5 cut(s) 14, 202, 367, 620, 875
Eam1104I CTCTTC 2 cut(s) 489, 1050
EarI CTCTTC 2 cut(s) 489, 1050
EciI GGCGGA 1 cut(s) 455
Eco130I CCWWGG 1 cut(s) 784
Eco24I GRGCYC 2 cut(s) 575, 920
Eco31I GGTCTC 1 cut(s) 277
Eco57I CTGAAG 4 cut(s) 9, 906, 1050, 1248
Eco91I GGTNACC 1 cut(s) 412
EcoNI CCTNNNNNAGG 1 cut(s) 908
EcoO65I GGTNACC 1 cut(s) 412
EcoRII CCWGG 2 cut(s) 608, 1094
EcoT14I CCWWGG 1 cut(s) 784
EcoT38I GRGCYC 2 cut(s) 575, 920
ErhI CCWWGG 1 cut(s) 784
FaeI CATG 9 cut(s) 33, 138, 214, 251, 380, 493, 569, 788, 854
FaqI GGGAC 2 cut(s) 22, 1272
FatI CATG 9 cut(s) 29, 134, 210, 247, 376, 489, 565, 784, 850
Fnu4HI GCNGC 2 cut(s) 1038, 1164
FokI GGATG 5 cut(s) 55, 801, 1019, 1198, 1235
FriOI GRGCYC 2 cut(s) 575, 920
Fsp4HI GCNGC 2 cut(s) 1038, 1164
FspBI CTAG 3 cut(s) 51, 395, 1262
GlaI GCGC 2 cut(s) 231, 1036
GluI GCNGC 2 cut(s) 1038, 1164
GsuI CTGGAG 1 cut(s) 1117
HaeII RGCGCY 1 cut(s) 1038
HaeIII GGCC 3 cut(s) 613, 641, 1178
HapII CCGG 4 cut(s) 89, 143, 176, 314
HgaI GACGC 2 cut(s) 270, 489
HhaI GCGC 2 cut(s) 232, 1037
Hin1I GRCGYC 2 cut(s) 262, 500
Hin1II CATG 9 cut(s) 33, 138, 214, 251, 380, 493, 569, 788, 854
Hin6I GCGC 2 cut(s) 230, 1035
HinP1I GCGC 2 cut(s) 230, 1035
HincII GTYRAC 2 cut(s) 510, 688
HindII GTYRAC 2 cut(s) 510, 688
HinfI GANTC 2 cut(s) 506, 780
HpaII CCGG 4 cut(s) 89, 143, 176, 314
HphI GGTGA 4 cut(s) 144, 424, 925, 1055
Hpy166II GTNNAC 3 cut(s) 241, 510, 688
Hpy188I TCNGA 3 cut(s) 505, 620, 1030
Hpy188III TCNNGA 1 cut(s) 884
Hpy8I GTNNAC 3 cut(s) 241, 510, 688
HpyAV CCTTC 6 cut(s) 294, 508, 610, 1025, 1168, 1280
HpyCH4III ACNGT 2 cut(s) 118, 476
HpyCH4IV ACGT 2 cut(s) 949, 1071
HpyCH4V TGCA 6 cut(s) 68, 86, 1075, 1121, 1166, 1194
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 83, 139, 446, 486
HpyF3I CTNAG 4 cut(s) 465, 504, 555, 731
HpySE526I ACGT 2 cut(s) 949, 1071
Hsp92I GRCGYC 2 cut(s) 262, 500
Hsp92II CATG 9 cut(s) 33, 138, 214, 251, 380, 493, 569, 788, 854
HspAI GCGC 2 cut(s) 230, 1035
Kzo9I GATC 5 cut(s) 14, 202, 367, 620, 875
LmnI GCTCC 1 cut(s) 970
Lsp1109I GCAGC 2 cut(s) 1024, 1150
LweI GCATC 2 cut(s) 77, 1213
MaeI CTAG 3 cut(s) 51, 395, 1262
MaeII ACGT 2 cut(s) 949, 1071
MaeIII GTNAC 5 cut(s) 150, 379, 412, 868, 1100
MalI GATC 5 cut(s) 16, 204, 369, 622, 877
MboI GATC 5 cut(s) 14, 202, 367, 620, 875
MboII GAAGA 7 cut(s) 279, 506, 530, 874, 1064, 1067, 1076
MflI RGATCY 2 cut(s) 14, 367
MhlI GDGCHC 3 cut(s) 575, 732, 920
MluCI AATT 5 cut(s) 296, 738, 830, 879, 1154
MlyI GAGTC 2 cut(s) 515, 774
MmeI TCCRAC 1 cut(s) 1239
MroXI GAANNNNTTC 2 cut(s) 191, 300
MseI TTAA 3 cut(s) 809, 1001, 1139
MslI CAYNNNNRTG 2 cut(s) 133, 474
MspI CCGG 4 cut(s) 89, 143, 176, 314
MspR9I CCNGG 2 cut(s) 610, 1096
MvaI CCWGG 2 cut(s) 610, 1096
MvnI CGCG 1 cut(s) 1089
MwoI GCNNNNNNNGC 5 cut(s) 74, 83, 139, 446, 486
NcoI CCATGG 1 cut(s) 784
NdeII GATC 5 cut(s) 14, 202, 367, 620, 875
NlaIII CATG 9 cut(s) 33, 138, 214, 251, 380, 493, 569, 788, 854
NlaIV GGNNCC 4 cut(s) 93, 594, 972, 1131
NmeAIII GCCGAG 1 cut(s) 53
NmuCI GTSAC 3 cut(s) 150, 412, 868
NspI RCATGY 1 cut(s) 854
NspV TTCGAA 1 cut(s) 681
PciI ACATGT 1 cut(s) 850
PcsI WCGNNNNNNNCGW 2 cut(s) 122, 687
PdmI GAANNNNTTC 2 cut(s) 191, 300
Pfl23II CGTACG 1 cut(s) 1068
PflMI CCANNNNNTGG 1 cut(s) 1205
PinAI ACCGGT 2 cut(s) 88, 175
PkrI GCNGC 2 cut(s) 1039, 1165
PleI GAGTC 2 cut(s) 514, 774
PpsI GAGTC 2 cut(s) 514, 774
Ppu21I YACGTR 1 cut(s) 1072
PscI ACATGT 1 cut(s) 850
PsiI TTATAA 1 cut(s) 309
Psp6I CCWGG 2 cut(s) 608, 1094
PspEI GGTNACC 1 cut(s) 412
PspGI CCWGG 2 cut(s) 608, 1094
PspLI CGTACG 1 cut(s) 1068
PspN4I GGNNCC 4 cut(s) 93, 594, 972, 1131
PspPI GGNCC 1 cut(s) 640
PstI CTGCAG 1 cut(s) 1123
PsuI RGATCY 2 cut(s) 14, 367
RsaI GTAC 3 cut(s) 120, 1070, 1210
RsaNI GTAC 3 cut(s) 119, 1069, 1209
RseI CAYNNNNRTG 2 cut(s) 133, 474
SaqAI TTAA 3 cut(s) 809, 1001, 1139
SatI GCNGC 2 cut(s) 1038, 1164
Sau3AI GATC 5 cut(s) 14, 202, 367, 620, 875
Sau96I GGNCC 1 cut(s) 640
SchI GAGTC 2 cut(s) 515, 774
ScrFI CCNGG 2 cut(s) 610, 1096
SduI GDGCHC 3 cut(s) 575, 732, 920
SfaNI GCATC 2 cut(s) 77, 1213
SfcI CTRYAG 4 cut(s) 168, 338, 1119, 1233
SfuI TTCGAA 1 cut(s) 681
SmiMI CAYNNNNRTG 2 cut(s) 133, 474
SmlI CTYRAG 1 cut(s) 747
SmoI CTYRAG 1 cut(s) 747
SpeI ACTAGT 1 cut(s) 50
Sse9I AATT 5 cut(s) 296, 738, 830, 879, 1154
SsiI CCGC 2 cut(s) 440, 542
SspMI CTAG 3 cut(s) 51, 395, 1262
StyD4I CCNGG 2 cut(s) 608, 1094
StyI CCWWGG 1 cut(s) 784
TaaI ACNGT 2 cut(s) 118, 476
TaiI ACGT 2 cut(s) 952, 1074
TaqI TCGA 7 cut(s) 47, 195, 681, 826, 834, 860, 956
TaqII GACCGA 1 cut(s) 431
TasI AATT 5 cut(s) 296, 738, 830, 879, 1154
Tru1I TTAA 3 cut(s) 809, 1001, 1139
Tru9I TTAA 3 cut(s) 809, 1001, 1139
TscAI CASTG 2 cut(s) 481, 1123
TseFI GTSAC 3 cut(s) 150, 412, 868
TseI GCWGC 2 cut(s) 1037, 1163
Tsp45I GTSAC 3 cut(s) 150, 412, 868
TspDTI ATGAA 7 cut(s) 365, 440, 738, 1023, 1124, 1287, 1292
TspGWI ACGGA 1 cut(s) 605
TspRI CASTG 2 cut(s) 481, 1123
Van91I CCANNNNNTGG 1 cut(s) 1205
XagI CCTNNNNNAGG 1 cut(s) 908
XapI RAATTY 1 cut(s) 1154
XceI RCATGY 1 cut(s) 854
XcmI CCANNNNNNNNNTGG 1 cut(s) 634
XmnI GAANNNNTTC 2 cut(s) 191, 300
XspI CTAG 3 cut(s) 51, 395, 1262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.