Rh4CG192100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001250
Physical Location & Seq
Reverse (-)
41277119 .. 41278779
1661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG192100.1

Sequence Viewer

Length: 579 bp
ATGATGTCTACTTCTGATCATGAAGATCTCAGATCAATATTAACCAACATGGTGGTGAAATCAAAATCAATTCTGGAATGTTTATTTCCAGTAGCTGATGAAACAAAAACCAATCATCAAAGGACATCAACAAGTCTGAGGGGAAAAAGAAAACGAGTTGAAACCATACCAGCTGGTGAAATTGAAGTTTCATTCAAACTTTCTAGTGATTGCTATTCCAATCAGAGTCACAATGAGAAGGAAAGAGAAAATGAGACTACTAGTAGTACTCCTTGTCATTTGTCTTTCTTTGAGAGACTCGAAGGATGGAAGCTCGAGCGCAAACAAAGATGCAAGGGACAAATCGACACGTACTACCATCACTTCAAATCAAACATCGTCTTGCGATCAATTAAAGAGGTGATAGAATTTATGCTTAATGGAAAATATCCAAAAGAGCAGGCTGATCGCTGCAATGAGAAGATTCATTTTCTTTTCGGTTTGACTAAAGAAGAGTTTACAGGGTCATCCTCAACCTCCAATATGGAAGCACGAGATGTAAAACGCTTGAAAGGAGGATACTTCTTGAGGAGTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook

Protein Analysis

192

Amino Acids

22.31

Weight (kDa)

8.92

Isoelectric Point (pI)

47.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 8
AcsI RAATTY 1 cut(s) 407
AfaI GTAC 2 cut(s) 268, 353
AflIII ACRYGT 1 cut(s) 348
AgsI TTSAA 5 cut(s) 161, 185, 196, 367, 550
AhlI ACTAGT 1 cut(s) 260
AluBI AGCT 3 cut(s) 95, 173, 313
AluI AGCT 3 cut(s) 95, 173, 313
Alw26I GTCTC 2 cut(s) 248, 289
AlwNI CAGNNNCTG 1 cut(s) 95
Ama87I CYCGRG 1 cut(s) 314
ApeKI GCWGC 1 cut(s) 450
ApoI RAATTY 1 cut(s) 407
AspLEI GCGC 1 cut(s) 321
AsuHPI GGTGA 3 cut(s) 67, 188, 412
AvaI CYCGRG 1 cut(s) 314
BauI CACGAG 1 cut(s) 531
BbvI GCAGC 1 cut(s) 437
BccI CCATC 2 cut(s) 300, 366
BcgI CGANNNNNNTGC 2 cut(s) 428, 462
BciVI GTATCC 1 cut(s) 551
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 2 cut(s) 248, 289
BcuI ACTAGT 1 cut(s) 260
BfaI CTAG 2 cut(s) 204, 261
BfuI GTATCC 1 cut(s) 551
BglII AGATCT 1 cut(s) 25
BisI GCNGC 1 cut(s) 451
BlsI GCNGC 1 cut(s) 452
BmcAI AGTACT 1 cut(s) 268
BmeT110I CYCGRG 1 cut(s) 314
BmsI GCATC 1 cut(s) 320
BsaAI YACGTR 1 cut(s) 351
Bse1I ACTGG 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 460
BseGI GGATG 2 cut(s) 311, 506
BseMI GCAATG 1 cut(s) 460
BseMII CTCAG 2 cut(s) 43, 128
BseNI ACTGG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 437
BsiHKCI CYCGRG 1 cut(s) 314
BslFI GGGAC 1 cut(s) 351
BsmAI GTCTC 2 cut(s) 248, 289
BsmFI GGGAC 1 cut(s) 351
BsoBI CYCGRG 1 cut(s) 314
Bsp143I GATC 5 cut(s) 16, 25, 32, 386, 445
BspCNI CTCAG 2 cut(s) 42, 129
BspHI TCATGA 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 460
BsrI ACTGG 1 cut(s) 89
BssMI GATC 5 cut(s) 16, 25, 32, 386, 445
BssSI CACGAG 1 cut(s) 531
Bst2BI CACGAG 1 cut(s) 531
Bst6I CTCTTC 1 cut(s) 486
BstBAI YACGTR 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 441
BstDEI CTNAG 2 cut(s) 29, 137
BstF5I GGATG 2 cut(s) 311, 506
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 5 cut(s) 19, 28, 35, 389, 448
BstMAI GTCTC 2 cut(s) 248, 289
BstMBI GATC 5 cut(s) 16, 25, 32, 386, 445
BstV1I GCAGC 1 cut(s) 437
BstX2I RGATCY 1 cut(s) 25
BstXI CCANNNNNNTGG 1 cut(s) 52
BstYI RGATCY 1 cut(s) 25
BsuI GTATCC 1 cut(s) 551
BtsCI GGATG 2 cut(s) 311, 506
Cac8I GCNNGC 1 cut(s) 441
CaiI CAGNNNCTG 1 cut(s) 95
CciI TCATGA 1 cut(s) 19
CfoI GCGC 1 cut(s) 321
Csp6I GTAC 2 cut(s) 267, 352
CviAII CATG 2 cut(s) 20, 49
CviJI RGCY 4 cut(s) 95, 173, 313, 443
CviKI_1 RGCY 4 cut(s) 95, 173, 313, 443
CviQI GTAC 2 cut(s) 267, 352
DdeI CTNAG 2 cut(s) 29, 137
DpnI GATC 5 cut(s) 18, 27, 34, 388, 447
DpnII GATC 5 cut(s) 16, 25, 32, 386, 445
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Eco88I CYCGRG 1 cut(s) 314
FaeI CATG 2 cut(s) 23, 52
FaiI YATR 5 cut(s) 21, 50, 167, 413, 524
FaqI GGGAC 1 cut(s) 351
FatI CATG 2 cut(s) 19, 48
FbaI TGATCA 1 cut(s) 16
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 1 cut(s) 451
FokI GGATG 2 cut(s) 318, 493
Fsp4HI GCNGC 1 cut(s) 451
FspBI CTAG 2 cut(s) 204, 261
GlaI GCGC 1 cut(s) 320
GluI GCNGC 1 cut(s) 451
HhaI GCGC 1 cut(s) 321
Hin1II CATG 2 cut(s) 23, 52
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HinfI GANTC 3 cut(s) 226, 297, 463
HphI GGTGA 3 cut(s) 67, 188, 412
Hpy166II GTNNAC 2 cut(s) 9, 498
Hpy188I TCNGA 4 cut(s) 16, 32, 138, 225
Hpy188III TCNNGA 3 cut(s) 20, 74, 565
Hpy8I GTNNAC 2 cut(s) 9, 498
HpyAV CCTTC 2 cut(s) 232, 296
HpyCH4IV ACGT 1 cut(s) 350
HpyCH4V TGCA 2 cut(s) 333, 453
HpyF3I CTNAG 2 cut(s) 29, 137
HpySE526I ACGT 1 cut(s) 350
Hsp92II CATG 2 cut(s) 23, 52
HspAI GCGC 1 cut(s) 319
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 5 cut(s) 16, 25, 32, 386, 445
LpnPI CCDG 6 cut(s) 59, 102, 159, 183, 425, 486
Lsp1109I GCAGC 1 cut(s) 437
LweI GCATC 1 cut(s) 320
MaeI CTAG 2 cut(s) 204, 261
MaeII ACGT 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 227
MalI GATC 5 cut(s) 18, 27, 34, 388, 447
MboI GATC 5 cut(s) 16, 25, 32, 386, 445
MboII GAAGA 3 cut(s) 35, 472, 503
MflI RGATCY 1 cut(s) 25
MluCI AATT 4 cut(s) 69, 180, 390, 407
MlyI GAGTC 2 cut(s) 235, 291
MnlI CCTC 6 cut(s) 132, 391, 520, 526, 548, 561
MseI TTAA 3 cut(s) 41, 393, 417
MslI CAYNNNNRTG 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 173
NdeII GATC 5 cut(s) 16, 25, 32, 386, 445
NlaIII CATG 2 cut(s) 23, 52
NmuCI GTSAC 1 cut(s) 227
PaeR7I CTCGAG 1 cut(s) 314
PagI TCATGA 1 cut(s) 19
PfeI GAWTC 1 cut(s) 463
PkrI GCNGC 1 cut(s) 452
PleI GAGTC 2 cut(s) 234, 291
PpsI GAGTC 2 cut(s) 234, 291
Ppu21I YACGTR 1 cut(s) 351
PspXI VCTCGAGB 1 cut(s) 314
PstNI CAGNNNCTG 1 cut(s) 95
PsuI RGATCY 1 cut(s) 25
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 2 cut(s) 268, 353
RsaNI GTAC 2 cut(s) 267, 352
RseI CAYNNNNRTG 1 cut(s) 53
SaqAI TTAA 3 cut(s) 41, 393, 417
SatI GCNGC 1 cut(s) 451
Sau3AI GATC 5 cut(s) 16, 25, 32, 386, 445
ScaI AGTACT 1 cut(s) 268
SchI GAGTC 2 cut(s) 235, 291
SetI ASST 6 cut(s) 97, 175, 315, 353, 402, 518
SfaNI GCATC 1 cut(s) 320
Sfr274I CTCGAG 1 cut(s) 314
SlaI CTCGAG 1 cut(s) 314
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 2 cut(s) 314, 565
SmoI CTYRAG 2 cut(s) 314, 565
SpeI ACTAGT 1 cut(s) 260
Sse9I AATT 4 cut(s) 69, 180, 390, 407
SspI AATATT 1 cut(s) 39
SspMI CTAG 2 cut(s) 204, 261
TaiI ACGT 1 cut(s) 353
TaqI TCGA 3 cut(s) 300, 315, 345
TasI AATT 4 cut(s) 69, 180, 390, 407
TatI WGTACW 1 cut(s) 266
TfiI GAWTC 1 cut(s) 463
Tru1I TTAA 3 cut(s) 41, 393, 417
Tru9I TTAA 3 cut(s) 41, 393, 417
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 1 cut(s) 450
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 4 cut(s) 36, 114, 180, 455
XapI RAATTY 1 cut(s) 407
XhoI CTCGAG 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 8
XspI CTAG 2 cut(s) 204, 261
ZrmI AGTACT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.