RLG00000023405

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
23184509 .. 23187106
2598 bp
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UTR
Exon/CDS
Intron
RLM00000023405

Sequence Viewer

Length: 525 bp
ATGGCTACTGTACTCTCTGGTGCAGATGAGTTGCATTTGCAACTTCACCAAACGATAAAAAGGTTGGTGGCGGAAAAACACGAAGTGAGACAAGCAAGAAGTATGATGTTTCCTGTTGGGGAAACTTCCTTTTCGTTCCAACTTCCAGCAGATTTTCCTCTTCATCAGATTGACGTGGAAAAGTTGGTGCCCCCTGAGAGGGAAGTTACTGGTACAAGTGGGTGTATCCGTAAATTTTCATTCTTTGAAAGGCTCATGGGATGGAATATCGAGGTTAGACAAAGACAAACTGGACGTGCCCTCGACTCGTATTTCTATCACGAGAAGTTCAACAAAGTTTTGCGATCCGTTATAGAGGTGGTAGGTTTCATCCTCTATGAAGATCCAACGGCTGTGAAATCTGAAAAGAGAAAGGCAGCATCGACTTTACCAAAGGAAGAATCCAGTAACAAAAGAGTCAACGTGGAGATGAAACAAAGTGAGGATTTCAATATCCAAGATGGCAATGAATTTACTATATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

175

Amino Acids

20.13

Weight (kDa)

6.53

Isoelectric Point (pI)

61.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 187
AciI CCGC 1 cut(s) 71
AclWI GGATC 2 cut(s) 339, 377
AcsI RAATTY 2 cut(s) 233, 509
AdeI CACNNNGTG 1 cut(s) 85
AfaI GTAC 2 cut(s) 12, 214
AfiI CCNNNNNNNGG 2 cut(s) 198, 199
AgsI TTSAA 3 cut(s) 248, 331, 490
AjiI CACGTC 2 cut(s) 175, 296
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 2 cut(s) 339, 377
ApeKI GCWGC 1 cut(s) 416
ApoI RAATTY 2 cut(s) 233, 509
AsuHPI GGTGA 1 cut(s) 38
BaeGI GKGCMC 2 cut(s) 192, 301
BanI GGYRCC 1 cut(s) 187
BauI CACGAG 1 cut(s) 320
BbvI GCAGC 1 cut(s) 428
BccI CCATC 2 cut(s) 255, 494
BceAI ACGGC 1 cut(s) 405
BciVI GTATCC 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 82
BfuI GTATCC 1 cut(s) 236
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
BmgBI CACGTC 2 cut(s) 175, 296
BmiI GGNNCC 1 cut(s) 189
BmsI GCATC 1 cut(s) 428
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 199
Bse1I ACTGG 3 cut(s) 214, 295, 444
Bse3DI GCAATG 1 cut(s) 511
BseGI GGATG 2 cut(s) 266, 369
BseLI CCNNNNNNNGG 2 cut(s) 198, 199
BseMI GCAATG 1 cut(s) 511
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 3 cut(s) 214, 295, 444
BseSI GKGCMC 2 cut(s) 192, 301
BseXI GCAGC 1 cut(s) 428
BsgI GTGCAG 1 cut(s) 42
BshNI GGYRCC 1 cut(s) 187
BslI CCNNNNNNNGG 2 cut(s) 198, 199
BsmAI GTCTC 1 cut(s) 82
Bsp1286I GDGCHC 2 cut(s) 192, 301
Bsp143I GATC 2 cut(s) 344, 382
BspACI CCGC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 189
BspPI GGATC 2 cut(s) 339, 377
BspT107I GGYRCC 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 511
BsrI ACTGG 3 cut(s) 214, 295, 444
BssMI GATC 2 cut(s) 344, 382
BssSI CACGAG 1 cut(s) 320
Bst2BI CACGAG 1 cut(s) 320
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 195
BstF5I GGATG 2 cut(s) 266, 369
BstKTI GATC 2 cut(s) 347, 385
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 2 cut(s) 344, 382
BstSLI GKGCMC 2 cut(s) 192, 301
BstV1I GCAGC 1 cut(s) 428
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BsuI GTATCC 1 cut(s) 236
BtrI CACGTC 2 cut(s) 175, 296
BtsCI GGATG 2 cut(s) 266, 369
Csp6I GTAC 2 cut(s) 11, 213
CviAII CATG 1 cut(s) 256
CviJI RGCY 3 cut(s) 5, 253, 392
CviKI_1 RGCY 3 cut(s) 5, 253, 392
CviQI GTAC 2 cut(s) 11, 213
DdeI CTNAG 1 cut(s) 195
DpnI GATC 2 cut(s) 346, 384
DpnII GATC 2 cut(s) 344, 382
DraIII CACNNNGTG 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
EciI GGCGGA 1 cut(s) 86
FaeI CATG 1 cut(s) 259
FaiI YATR 6 cut(s) 104, 257, 353, 378, 518, 520
FatI CATG 1 cut(s) 255
Fnu4HI GCNGC 1 cut(s) 417
FokI GGATG 2 cut(s) 273, 356
Fsp4HI GCNGC 1 cut(s) 417
GluI GCNGC 1 cut(s) 417
Hin1II CATG 1 cut(s) 259
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HinfI GANTC 3 cut(s) 305, 440, 456
HphI GGTGA 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 460
Hpy188I TCNGA 2 cut(s) 168, 403
Hpy188III TCNNGA 1 cut(s) 320
Hpy8I GTNNAC 1 cut(s) 460
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 3 cut(s) 174, 295, 462
HpyCH4V TGCA 3 cut(s) 23, 34, 40
HpyF3I CTNAG 1 cut(s) 195
HpySE526I ACGT 3 cut(s) 174, 295, 462
Hsp92II CATG 1 cut(s) 259
Kzo9I GATC 2 cut(s) 344, 382
LpnPI CCDG 7 cut(s) 3, 126, 159, 195, 207, 276, 457
Lsp1109I GCAGC 1 cut(s) 428
LweI GCATC 1 cut(s) 428
MaeII ACGT 3 cut(s) 174, 295, 462
MaeIII GTNAC 2 cut(s) 205, 446
MalI GATC 2 cut(s) 346, 384
MboI GATC 2 cut(s) 344, 382
MboII GAAGA 3 cut(s) 152, 392, 449
MflI RGATCY 1 cut(s) 382
MhlI GDGCHC 2 cut(s) 192, 301
MluCI AATT 2 cut(s) 233, 509
MlyI GAGTC 2 cut(s) 299, 465
MmeI TCCRAC 2 cut(s) 163, 410
MnlI CCTC 7 cut(s) 168, 192, 265, 311, 349, 383, 475
NdeII GATC 2 cut(s) 344, 382
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 440
PkrI GCNGC 1 cut(s) 418
PleI GAGTC 2 cut(s) 299, 464
PpsI GAGTC 2 cut(s) 299, 464
PspN4I GGNNCC 1 cut(s) 189
PsuI RGATCY 1 cut(s) 382
RsaI GTAC 2 cut(s) 12, 214
RsaNI GTAC 2 cut(s) 11, 213
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 2 cut(s) 344, 382
SchI GAGTC 2 cut(s) 299, 465
SduI GDGCHC 2 cut(s) 192, 301
SetI ASST 7 cut(s) 65, 177, 276, 298, 360, 367, 465
SfaNI GCATC 1 cut(s) 428
Sse9I AATT 2 cut(s) 233, 509
SsiI CCGC 1 cut(s) 71
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 3 cut(s) 177, 298, 465
TaqI TCGA 3 cut(s) 270, 303, 422
TasI AATT 2 cut(s) 233, 509
TatI WGTACW 1 cut(s) 10
TfiI GAWTC 1 cut(s) 440
TseI GCWGC 1 cut(s) 416
TspDTI ATGAA 6 cut(s) 152, 228, 358, 393, 485, 522
TspGWI ACGGA 2 cut(s) 218, 337
XapI RAATTY 2 cut(s) 233, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.