Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007142.1

Orthogroup ID

OG0001250

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1388

Gene Structure 1388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007142.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 673 bp

atcatcgactagtagcacttcacttgcatcctcggctacaactgcaccggttcccttaccacccaagtttgacacggtactgtcgtcatcgccatgtcagccggtagtgtcaccaccaccccattctgtagcaccagtttcacagaagccgttcgatttagatcaggtcatgggcaactttccacgggcgcaaatagtggactaccatgagacacaaagacgccaagtggtctctccatctccttcttcaaaggaattggttctttataagccggagacacagcgacaagaaaatctacaggaacgacttgggcaagtcatcaaggatcttgttcatgtaacaatgtttgccctagaaaccccgaaagaggtgaccgagttgatgaaacaagcagaggcggagatagcgaacgaacgaaaggctgagcattacagtggcagaagtagcatggaagaggcgtctgagtcaacgaaggaagacaataaactgatgatagtagcggtagaggaggctcaggctgaccatgagagccctaaaataacgaacacggaaccgaccttcactaccaggccagtccgatcagccaccaaactaatggcccatatttccaatgtgtctttccaaatgcctgatgatttcgaagttgacgatgacacaataaacgaggtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

24.69

Weight (kDa)

4.89

Isoelectric Point (pI)

61.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02611 FvH4_4g02612 FvH4_5g14730 FvH4_5g20350 FvH4_6g23221
malus_domestica	MD12G1142400.v1.1
prunus_persica	Prupe.6G255700_v2.0.a1
pyrus_communis	pycom12g13720
rosa_laevigata	RLG00000009914 RLG00000009922 RLG00000009923 RLG00000022757 RLG00000023405 RLG00000023428
rosa_multiflora	Rmu_sc0001380.1_g000014 Rmu_sc0006160.1_g000004 Rmu_sc0007142.1_g000001 Rmu_sc0038645.1_g000001
rosa_roxburghii	Rroxscaffold_5G00336460 Rroxscaffold_5G00336470 Rroxscaffold_5G00336560 Rroxscaffold_6G00392190 Rroxscaffold_6G00400500
rosa_rugosa	Rorug03G0191200 Rorug03G0330500 Rorug03G0330600
rosa_samantha	Rh2AG375900 Rh2CG353800 Rh3AG242100 Rh3AG305100 Rh3BG275700 Rh3BG277200 Rh3BG318200 Rh3CG338600 Rh3DG269100 Rh3DG340600 Rh4AG032000 Rh4AG032100 Rh4AG032700 Rh4AG181000 Rh4BG026100 Rh4BG026200 Rh4BG180200 Rh4CG035100 Rh4CG035200 Rh4CG035600 Rh4CG036600 Rh4CG192100 Rh4DG027700 Rh4DG027800 Rh4DG028400 Rh4DG176300
rosa_wichuraiana	Rw0G002680 Rw3G021640 Rw4G015120 Rw6G029820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	268
AciI	CCGC	2 cut(s)	399, 501
AclWI	GGATC	1 cut(s)	334
AcyI	GRCGYC	2 cut(s)	221, 459
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgeI	ACCGGT	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	250
AhlI	ACTAGT	1 cut(s)	9
AjnI	CCWGG	1 cut(s)	567
AjuI	GAANNNNNNNTTGG	2 cut(s)	603, 635
Alw26I	GTCTC	3 cut(s)	204, 236, 270
AlwI	GGATC	1 cut(s)	334
AoxI	GGCC	2 cut(s)	570, 598
AsiGI	ACCGGT	1 cut(s)	47
Asp700I	GAANNNNTTC	2 cut(s)	150, 259
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	599
AsuHPI	GGTGA	2 cut(s)	103, 383
AsuII	TTCGAA	1 cut(s)	640
BaeI	ACNNNNGTAYC	2 cut(s)	69, 102
BanII	GRGCYC	1 cut(s)	534
BbsI	GAAGAC	1 cut(s)	484
BccI	CCATC	1 cut(s)	245
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	569
BcoDI	GTCTC	3 cut(s)	204, 236, 270
BcuI	ACTAGT	1 cut(s)	9
BfaI	CTAG	2 cut(s)	10, 354
BfmI	CTRYAG	2 cut(s)	127, 297
BlpI	GCTNAGC	1 cut(s)	424
Bme1390I	CCNGG	1 cut(s)	569
BmgT120I	GGNCC	1 cut(s)	599
BmiI	GGNNCC	2 cut(s)	52, 553
BmrFI	CCNGG	1 cut(s)	569
BmsI	GCATC	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	484
Bpu10I	CCTNAGC	1 cut(s)	514
Bpu1102I	GCTNAGC	1 cut(s)	424
Bpu14I	TTCGAA	1 cut(s)	640
BsaBI	GATNNNNATC	1 cut(s)	160
BsaHI	GRCGYC	2 cut(s)	221, 459
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	31, 183
BsaWI	WCCGGW	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse118I	RCCGGY	2 cut(s)	47, 101
Bse1I	ACTGG	2 cut(s)	135, 573
Bse8I	GATNNNNATC	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	569
BseDI	CCNNGG	2 cut(s)	31, 183
BseGI	GGATG	1 cut(s)	27
BseJI	GATNNNNATC	1 cut(s)	160
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMII	CTCAG	3 cut(s)	415, 454, 528
BseNI	ACTGG	2 cut(s)	135, 573
BseRI	GAGGAG	1 cut(s)	522
BsgI	GTGCAG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	572, 600
BshTI	ACCGGT	1 cut(s)	47
BsiSI	CCGG	3 cut(s)	48, 102, 273
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	3 cut(s)	204, 236, 270
BsnI	GGCC	2 cut(s)	572, 600
Bso31I	GGTCTC	1 cut(s)	236
Bsp119I	TTCGAA	1 cut(s)	640
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp143I	GATC	3 cut(s)	161, 326, 579
Bsp1720I	GCTNAGC	1 cut(s)	424
BspACI	CCGC	2 cut(s)	399, 501
BspANI	GGCC	2 cut(s)	572, 600
BspCNI	CTCAG	3 cut(s)	416, 455, 527
BspLI	GGNNCC	2 cut(s)	52, 553
BspPI	GGATC	1 cut(s)	334
BspT104I	TTCGAA	1 cut(s)	640
BspTNI	GGTCTC	1 cut(s)	236
BsrFI	RCCGGY	2 cut(s)	47, 101
BsrI	ACTGG	2 cut(s)	135, 573
BssAI	RCCGGY	2 cut(s)	47, 101
BssECI	CCNNGG	2 cut(s)	31, 183
BssMI	GATC	3 cut(s)	161, 326, 579
BssNI	GRCGYC	2 cut(s)	221, 459
Bst2UI	CCWGG	1 cut(s)	569
Bst4CI	ACNGT	3 cut(s)	77, 82, 435
Bst6I	CTCTTC	1 cut(s)	448
BstACI	GRCGYC	2 cut(s)	221, 459
BstBI	TTCGAA	1 cut(s)	640
BstDEI	CTNAG	3 cut(s)	424, 463, 514
BstDSI	CCRYGG	1 cut(s)	183
BstEII	GGTNACC	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	3 cut(s)	164, 329, 582
BstMAI	GTCTC	3 cut(s)	204, 236, 270
BstMBI	GATC	3 cut(s)	161, 326, 579
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 42, 98, 405, 445
BstNI	CCWGG	1 cut(s)	569
BstPI	GGTNACC	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	567
BstSFI	CTRYAG	2 cut(s)	127, 297
BstV2I	GAAGAC	1 cut(s)	484
BstX2I	RGATCY	1 cut(s)	326
BstXI	CCANNNNNNTGG	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	572, 600
BtgI	CCRYGG	1 cut(s)	183
BtgZI	GCGATG	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	440
CfoI	GCGC	1 cut(s)	191
Cfr10I	RCCGGY	2 cut(s)	47, 101
Cfr13I	GGNCC	1 cut(s)	599
CseI	GACGC	2 cut(s)	229, 448
Csp6I	GTAC	1 cut(s)	78
CspAI	ACCGGT	1 cut(s)	47
CviAII	CATG	6 cut(s)	94, 170, 207, 336, 449, 525
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	3 cut(s)	424, 463, 514
DpnI	GATC	3 cut(s)	163, 328, 581
DpnII	GATC	3 cut(s)	161, 326, 579
Eam1104I	CTCTTC	1 cut(s)	448
EarI	CTCTTC	1 cut(s)	448
EciI	GGCGGA	1 cut(s)	414
Eco24I	GRGCYC	1 cut(s)	534
Eco31I	GGTCTC	1 cut(s)	236
Eco91I	GGTNACC	1 cut(s)	371
EcoO65I	GGTNACC	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	567
EcoT38I	GRGCYC	1 cut(s)	534
FaeI	CATG	6 cut(s)	97, 173, 210, 339, 452, 528
FaiI	YATR	9 cut(s)	95, 171, 208, 268, 337, 450, 526, 604, 671
FatI	CATG	6 cut(s)	93, 169, 206, 335, 448, 524
FokI	GGATG	1 cut(s)	14
FriOI	GRGCYC	1 cut(s)	534
FspBI	CTAG	2 cut(s)	10, 354
GlaI	GCGC	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	572, 600
HapII	CCGG	3 cut(s)	48, 102, 273
HgaI	GACGC	2 cut(s)	229, 448
HhaI	GCGC	1 cut(s)	191
Hin1I	GRCGYC	2 cut(s)	221, 459
Hin1II	CATG	6 cut(s)	97, 173, 210, 339, 452, 528
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HincII	GTYRAC	2 cut(s)	469, 647
HindII	GTYRAC	2 cut(s)	469, 647
HinfI	GANTC	1 cut(s)	465
HpaII	CCGG	3 cut(s)	48, 102, 273
HphI	GGTGA	2 cut(s)	103, 383
Hpy166II	GTNNAC	3 cut(s)	200, 469, 647
Hpy188I	TCNGA	2 cut(s)	464, 579
Hpy8I	GTNNAC	3 cut(s)	200, 469, 647
HpyAV	CCTTC	3 cut(s)	253, 467, 569
HpyCH4III	ACNGT	3 cut(s)	77, 82, 435
HpyCH4V	TGCA	2 cut(s)	27, 45
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 42, 98, 405, 445
HpyF3I	CTNAG	3 cut(s)	424, 463, 514
Hsp92I	GRCGYC	2 cut(s)	221, 459
Hsp92II	CATG	6 cut(s)	97, 173, 210, 339, 452, 528
HspAI	GCGC	1 cut(s)	189
Kzo9I	GATC	3 cut(s)	161, 326, 579
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	2 cut(s)	10, 354
MaeIII	GTNAC	3 cut(s)	109, 338, 371
MalI	GATC	3 cut(s)	163, 328, 581
MboI	GATC	3 cut(s)	161, 326, 579
MboII	GAAGA	3 cut(s)	238, 465, 489
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	1 cut(s)	534
MluCI	AATT	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	474
MnlI	CCTC	7 cut(s)	41, 362, 389, 449, 500, 503, 659
MroXI	GAANNNNTTC	2 cut(s)	150, 259
MslI	CAYNNNNRTG	2 cut(s)	92, 433
MspI	CCGG	3 cut(s)	48, 102, 273
MspR9I	CCNGG	1 cut(s)	569
MvaI	CCWGG	1 cut(s)	569
MwoI	GCNNNNNNNGC	5 cut(s)	33, 42, 98, 405, 445
NdeII	GATC	3 cut(s)	161, 326, 579
NlaIII	CATG	6 cut(s)	97, 173, 210, 339, 452, 528
NlaIV	GGNNCC	2 cut(s)	52, 553
NmeAIII	GCCGAG	1 cut(s)	12
NmuCI	GTSAC	2 cut(s)	109, 371
NspV	TTCGAA	1 cut(s)	640
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 646
PdmI	GAANNNNTTC	2 cut(s)	150, 259
PinAI	ACCGGT	1 cut(s)	47
PleI	GAGTC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	473
PsiI	TTATAA	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	567
PspEI	GGTNACC	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	567
PspN4I	GGNNCC	2 cut(s)	52, 553
PspPI	GGNCC	1 cut(s)	599
PsuI	RGATCY	1 cut(s)	326
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	2 cut(s)	92, 433
Sau3AI	GATC	3 cut(s)	161, 326, 579
Sau96I	GGNCC	1 cut(s)	599
SchI	GAGTC	1 cut(s)	474
ScrFI	CCNGG	1 cut(s)	569
SduI	GDGCHC	1 cut(s)	534
SetI	ASST	4 cut(s)	169, 373, 561, 670
SfaNI	GCATC	1 cut(s)	36
SfcI	CTRYAG	2 cut(s)	127, 297
SfuI	TTCGAA	1 cut(s)	640
SmiMI	CAYNNNNRTG	2 cut(s)	92, 433
SpeI	ACTAGT	1 cut(s)	9
Sse9I	AATT	1 cut(s)	255
SsiI	CCGC	2 cut(s)	399, 501
SspMI	CTAG	2 cut(s)	10, 354
StyD4I	CCNGG	1 cut(s)	567
TaaI	ACNGT	3 cut(s)	77, 82, 435
TaqI	TCGA	3 cut(s)	6, 154, 640
TaqII	GACCGA	1 cut(s)	390
TasI	AATT	1 cut(s)	255
TscAI	CASTG	1 cut(s)	440
TseFI	GTSAC	2 cut(s)	109, 371
Tsp45I	GTSAC	2 cut(s)	109, 371
TspDTI	ATGAA	2 cut(s)	324, 399
TspGWI	ACGGA	1 cut(s)	564
TspRI	CASTG	1 cut(s)	440
XcmI	CCANNNNNNNNNTGG	1 cut(s)	593
XmnI	GAANNNNTTC	2 cut(s)	150, 259
XspI	CTAG	2 cut(s)	10, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.