Rroxscaffold_5G00336470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001250
Physical Location & Seq
Reverse (-)
4277928 .. 4280059
2132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00336470.1

Sequence Viewer

Length: 1170 bp
ATGGCATCACCAAGATCCTCATTTTTCTCAACGTGGAGGTCGCCATCATCCCCGTCACTGAACCGTAGCACTTCACTTGCATCCCCGGCTACAACTGCACCGGTTCCCTCACCACCCACTTTTGAGACTGGACTGTCGCCATCCACATATGAGCCGACAGTGACACCAGAACCCCAATTTTCACCCATGCCGTTCGATTACGATCAGATCATGGACGACTTTTCACCGGTGAAAATAGTGGACTACCATGAGATGCAAAGATGCCAAGTGGTCTCTCCATCTCCTTCTTCAAATGAATTAGTTCTCAATGAACCGAAGACACAGCCACAAGAAAATATACAGGAACGACTCGGACAAGTTGTCAAGGGTCTTGTTCAAAAAGAGGTAGATAAGTTGATGAAACAAGCAAAGGCGGACAGTGGCAGAACTAGCGTGGAAAAGACGTCTGAGTTAGCGAAGGACGACGGTAAATTGAAGATAACAGCGGCAGAGAAGGCTCAGGCTGACCATGAGAGCCCTAAAATAACTAACATGTTTGCTCCTAAGGATGAAGTCCTCAGAGAAATTACTGTTCAGAGTAGGAAAAAGTATAGTTTCTCTGACAGACTCCATGGATGGAAAATGGAGTGTAGGATAAGATTGAATGGTATCCAACAATTCGATAAGTATTTTACGCATGTAGAATCGAAGATTGTGACAAGATCAGTTCCCGAGGTTGTGAGGTTTATCCTTTATGAGGTGAACCCTAAACAAATGAAGGAAGCCAATAGCAAACGCAAAGGGATAGACATAGGGGAGCCAGCTGATGAGAGACCTAAAAAAATATTAAAGGATGAATACCTAAACAAGTCATCTGAAGGCGCTGCCAGTGATTCTGAAGAAAAGAGGGAATCGTACGATGAGTTGTTTTTTCGCGTAGCCTGGAGTAATCTGATAAACGACGCTGCAGAGAAGGTGCCGTTATTTAGTGAATGGGAAAAATTCAAGGCTGCAAAAAAGAAGGCCAGAACTAAACCATGCGAACCTGAGGTTGGTACACCCAACTTGGATATTGAAGCTCTAGAGACAGCAAACGCCTTGATGGGACTAGCTGGGGATGAAAGTTTGGCTATGAGAAAGTCGAAGGCATGTAATGATAGGTCTGGTTTTGGTGTTTTTGTCAGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook

Protein Analysis

389

Amino Acids

43.75

Weight (kDa)

7.59

Isoelectric Point (pI)

55.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 133
AatII GACGTC 1 cut(s) 446
AccB1I GGYRCC 1 cut(s) 955
AccII CGCG 1 cut(s) 915
AciI CCGC 2 cut(s) 413, 485
AclWI GGATC 1 cut(s) 9
AcsI RAATTY 1 cut(s) 980
AcuI CTGAAG 2 cut(s) 876, 897
AcyI GRCGYC 1 cut(s) 443
AfaI GTAC 2 cut(s) 896, 1036
AfiI CCNNNNNNNGG 2 cut(s) 736, 1031
AflIII ACRYGT 1 cut(s) 531
AgeI ACCGGT 2 cut(s) 100, 226
AgsI TTSAA 6 cut(s) 291, 377, 475, 643, 985, 1055
AhdI GACNNNNNGTC 1 cut(s) 359
AjnI CCWGG 1 cut(s) 920
AjuI GAANNNNNNNTTGG 2 cut(s) 1014, 1046
AluBI AGCT 3 cut(s) 803, 1058, 1091
AluI AGCT 3 cut(s) 803, 1058, 1091
Alw26I GTCTC 4 cut(s) 119, 277, 805, 1058
AlwI GGATC 1 cut(s) 9
Ama87I CYCGRG 1 cut(s) 710
AoxI GGCC 1 cut(s) 1002
ApeKI GCWGC 3 cut(s) 863, 944, 989
ApoI RAATTY 1 cut(s) 980
AsiGI ACCGGT 2 cut(s) 100, 226
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 1 cut(s) 863
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 5 cut(s) 102, 174, 216, 241, 751
AvaI CYCGRG 1 cut(s) 710
AxyI CCTNAGG 2 cut(s) 543, 1026
BanI GGYRCC 1 cut(s) 955
BanII GRGCYC 1 cut(s) 518
BbsI GAAGAC 1 cut(s) 323
BbvI GCAGC 3 cut(s) 850, 931, 976
BccI CCATC 5 cut(s) 52, 148, 286, 609, 1075
BceAI ACGGC 2 cut(s) 175, 943
BciT130I CCWGG 1 cut(s) 922
BciVI GTATCC 1 cut(s) 659
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 4 cut(s) 119, 277, 805, 1058
BfaI CTAG 3 cut(s) 429, 1061, 1088
BfmI CTRYAG 1 cut(s) 945
BfoI RGCGCY 1 cut(s) 864
BfuI GTATCC 1 cut(s) 659
BisI GCNGC 4 cut(s) 486, 864, 945, 990
BlsI GCNGC 4 cut(s) 487, 865, 946, 991
Bme1390I CCNGG 2 cut(s) 86, 922
BmeRI GACNNNNNGTC 1 cut(s) 359
BmeT110I CYCGRG 1 cut(s) 710
BmiI GGNNCC 3 cut(s) 105, 798, 957
BmrFI CCNGG 2 cut(s) 86, 922
BmsI GCATC 4 cut(s) 14, 89, 243, 251
BpiI GAAGAC 1 cut(s) 323
BpmI CTGGAG 1 cut(s) 943
Bpu10I CCTNAGC 1 cut(s) 498
BpuMI CCSGG 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 443
BsaI GGTCTC 2 cut(s) 277, 805
BsaJI CCNNGG 3 cut(s) 84, 610, 711
BsaWI WCCGGW 2 cut(s) 100, 226
Bsc4I CCNNNNNNNGG 2 cut(s) 736, 1031
Bse118I RCCGGY 2 cut(s) 100, 226
Bse1I ACTGG 2 cut(s) 133, 867
Bse21I CCTNAGG 2 cut(s) 543, 1026
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 1 cut(s) 922
BseDI CCNNGG 3 cut(s) 84, 610, 711
BseGI GGATG 7 cut(s) 47, 80, 140, 553, 620, 838, 1102
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 2 cut(s) 736, 1031
BseMII CTCAG 4 cut(s) 438, 512, 571, 1017
BseNI ACTGG 2 cut(s) 133, 867
BseXI GCAGC 3 cut(s) 850, 931, 976
BseYI CCCAGC 1 cut(s) 1091
BsgI GTGCAG 1 cut(s) 81
Bsh1236I CGCG 1 cut(s) 915
BshFI GGCC 1 cut(s) 1004
BshNI GGYRCC 1 cut(s) 955
BshTI ACCGGT 2 cut(s) 100, 226
BsiHKCI CYCGRG 1 cut(s) 710
BsiSI CCGG 3 cut(s) 86, 101, 227
BsiWI CGTACG 1 cut(s) 894
BslFI GGGAC 1 cut(s) 1098
BslI CCNNNNNNNGG 2 cut(s) 736, 1031
BsmAI GTCTC 4 cut(s) 119, 277, 805, 1058
BsmFI GGGAC 1 cut(s) 1098
BsnI GGCC 1 cut(s) 1004
Bso31I GGTCTC 2 cut(s) 277, 805
BsoBI CYCGRG 1 cut(s) 710
Bsp1286I GDGCHC 1 cut(s) 518
Bsp143I GATC 4 cut(s) 14, 202, 207, 701
Bsp19I CCATGG 1 cut(s) 610
BspACI CCGC 2 cut(s) 413, 485
BspANI GGCC 1 cut(s) 1004
BspCNI CTCAG 4 cut(s) 439, 511, 570, 1018
BspFNI CGCG 1 cut(s) 915
BspLI GGNNCC 3 cut(s) 105, 798, 957
BspMAI CTGCAG 1 cut(s) 949
BspPI GGATC 1 cut(s) 9
BspT107I GGYRCC 1 cut(s) 955
BspTNI GGTCTC 2 cut(s) 277, 805
BsrFI RCCGGY 2 cut(s) 100, 226
BsrI ACTGG 2 cut(s) 133, 867
BssAI RCCGGY 2 cut(s) 100, 226
BssECI CCNNGG 3 cut(s) 84, 610, 711
BssMI GATC 4 cut(s) 14, 202, 207, 701
BssNI GRCGYC 1 cut(s) 443
BssT1I CCWWGG 1 cut(s) 610
Bst2UI CCWGG 1 cut(s) 922
Bst4CI ACNGT 6 cut(s) 65, 135, 160, 419, 467, 571
BstACI GRCGYC 1 cut(s) 443
BstC8I GCNNGC 1 cut(s) 801
BstDEI CTNAG 5 cut(s) 447, 498, 543, 557, 1026
BstDSI CCRYGG 1 cut(s) 610
BstENI CCTNNNNNAGG 1 cut(s) 734
BstF5I GGATG 7 cut(s) 47, 80, 140, 553, 620, 838, 1102
BstFNI CGCG 1 cut(s) 915
BstH2I RGCGCY 1 cut(s) 864
BstHHI GCGC 1 cut(s) 863
BstKTI GATC 4 cut(s) 17, 205, 210, 704
BstMAI GTCTC 4 cut(s) 119, 277, 805, 1058
BstMBI GATC 4 cut(s) 14, 202, 207, 701
BstMWI GCNNNNNNNGC 4 cut(s) 86, 95, 429, 494
BstNI CCWGG 1 cut(s) 922
BstNSI RCATGY 3 cut(s) 535, 680, 1131
BstSCI CCNGG 2 cut(s) 84, 920
BstSFI CTRYAG 1 cut(s) 945
BstUI CGCG 1 cut(s) 915
BstV1I GCAGC 3 cut(s) 850, 931, 976
BstV2I GAAGAC 1 cut(s) 323
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
Bsu36I CCTNAGG 2 cut(s) 543, 1026
BsuI GTATCC 1 cut(s) 659
BsuRI GGCC 1 cut(s) 1004
BtgI CCRYGG 1 cut(s) 610
BtsCI GGATG 7 cut(s) 47, 80, 140, 553, 620, 838, 1102
BtsIMutI CAGTG 4 cut(s) 56, 165, 424, 874
Cac8I GCNNGC 1 cut(s) 801
CfoI GCGC 1 cut(s) 863
Cfr10I RCCGGY 2 cut(s) 100, 226
CseI GACGC 1 cut(s) 950
Csp6I GTAC 2 cut(s) 895, 1035
CspAI ACCGGT 2 cut(s) 100, 226
CviAII CATG 9 cut(s) 187, 211, 248, 509, 532, 611, 677, 1017, 1128
CviQI GTAC 2 cut(s) 895, 1035
DdeI CTNAG 5 cut(s) 447, 498, 543, 557, 1026
DpnI GATC 4 cut(s) 16, 204, 209, 703
DpnII GATC 4 cut(s) 14, 202, 207, 701
DrdI GACNNNNNNGTC 1 cut(s) 133
DriI GACNNNNNGTC 1 cut(s) 359
DseDI GACNNNNNNGTC 1 cut(s) 133
Eam1105I GACNNNNNGTC 1 cut(s) 359
EciI GGCGGA 1 cut(s) 428
Eco130I CCWWGG 1 cut(s) 610
Eco24I GRGCYC 1 cut(s) 518
Eco31I GGTCTC 2 cut(s) 277, 805
Eco57I CTGAAG 2 cut(s) 876, 897
Eco81I CCTNAGG 2 cut(s) 543, 1026
Eco88I CYCGRG 1 cut(s) 710
EcoNI CCTNNNNNAGG 1 cut(s) 734
EcoRII CCWGG 1 cut(s) 920
EcoT14I CCWWGG 1 cut(s) 610
EcoT38I GRGCYC 1 cut(s) 518
ErhI CCWWGG 1 cut(s) 610
FaeI CATG 9 cut(s) 190, 214, 251, 512, 535, 614, 680, 1020, 1131
FaqI GGGAC 1 cut(s) 1098
FatI CATG 9 cut(s) 186, 210, 247, 508, 531, 610, 676, 1016, 1127
FauNDI CATATG 1 cut(s) 148
Fnu4HI GCNGC 4 cut(s) 486, 864, 945, 990
FokI GGATG 7 cut(s) 34, 67, 127, 560, 627, 845, 1109
FriOI GRGCYC 1 cut(s) 518
Fsp4HI GCNGC 4 cut(s) 486, 864, 945, 990
FspBI CTAG 3 cut(s) 429, 1061, 1088
GlaI GCGC 1 cut(s) 862
GluI GCNGC 4 cut(s) 486, 864, 945, 990
GsaI CCCAGC 1 cut(s) 1095
GsuI CTGGAG 1 cut(s) 943
HaeII RGCGCY 1 cut(s) 864
HaeIII GGCC 1 cut(s) 1004
HapII CCGG 3 cut(s) 86, 101, 227
HgaI GACGC 1 cut(s) 950
HhaI GCGC 1 cut(s) 863
Hin1I GRCGYC 1 cut(s) 443
Hin1II CATG 9 cut(s) 190, 214, 251, 512, 535, 614, 680, 1020, 1131
Hin6I GCGC 1 cut(s) 861
HinP1I GCGC 1 cut(s) 861
HinfI GANTC 5 cut(s) 348, 606, 683, 872, 890
HpaII CCGG 3 cut(s) 86, 101, 227
HphI GGTGA 5 cut(s) 102, 174, 216, 241, 751
Hpy166II GTNNAC 3 cut(s) 241, 742, 1037
Hpy188I TCNGA 9 cut(s) 207, 353, 448, 560, 576, 601, 856, 877, 933
Hpy188III TCNNGA 3 cut(s) 710, 1061, 1162
Hpy8I GTNNAC 3 cut(s) 241, 742, 1037
Hpy99I CGWCG 2 cut(s) 467, 944
HpyAV CCTTC 8 cut(s) 294, 451, 487, 751, 851, 946, 994, 1117
HpyCH4III ACNGT 6 cut(s) 65, 135, 160, 419, 467, 571
HpyCH4IV ACGT 2 cut(s) 32, 443
HpyCH4V TGCA 5 cut(s) 80, 98, 256, 947, 992
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 95, 429, 494
HpyF3I CTNAG 5 cut(s) 447, 498, 543, 557, 1026
HpySE526I ACGT 2 cut(s) 32, 443
Hsp92I GRCGYC 1 cut(s) 443
Hsp92II CATG 9 cut(s) 190, 214, 251, 512, 535, 614, 680, 1020, 1131
HspAI GCGC 1 cut(s) 861
Kzo9I GATC 4 cut(s) 14, 202, 207, 701
LmnI GCTCC 2 cut(s) 544, 796
Lsp1109I GCAGC 3 cut(s) 850, 931, 976
LweI GCATC 4 cut(s) 14, 89, 243, 251
MaeI CTAG 3 cut(s) 429, 1061, 1088
MaeII ACGT 2 cut(s) 32, 443
MaeIII GTNAC 3 cut(s) 54, 160, 694
MalI GATC 4 cut(s) 16, 204, 209, 703
MboI GATC 4 cut(s) 14, 202, 207, 701
MboII GAAGA 5 cut(s) 279, 328, 487, 700, 890
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 518
MluCI AATT 6 cut(s) 176, 296, 470, 564, 656, 980
MlyI GAGTC 2 cut(s) 342, 600
MmeI TCCRAC 1 cut(s) 676
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 1 cut(s) 827
MspA1I CMGCKG 2 cut(s) 485, 803
MspI CCGG 3 cut(s) 86, 101, 227
MspR9I CCNGG 2 cut(s) 86, 922
MvaI CCWGG 1 cut(s) 922
MvnI CGCG 1 cut(s) 915
MwoI GCNNNNNNNGC 4 cut(s) 86, 95, 429, 494
NciI CCSGG 1 cut(s) 86
NcoI CCATGG 1 cut(s) 610
NdeI CATATG 1 cut(s) 148
NdeII GATC 4 cut(s) 14, 202, 207, 701
NlaIII CATG 9 cut(s) 190, 214, 251, 512, 535, 614, 680, 1020, 1131
NlaIV GGNNCC 3 cut(s) 105, 798, 957
NmuCI GTSAC 3 cut(s) 54, 160, 694
NspI RCATGY 3 cut(s) 535, 680, 1131
PciI ACATGT 1 cut(s) 531
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 3 cut(s) 683, 872, 890
Pfl23II CGTACG 1 cut(s) 894
PinAI ACCGGT 2 cut(s) 100, 226
PkrI GCNGC 4 cut(s) 487, 865, 946, 991
PleI GAGTC 2 cut(s) 342, 600
PpsI GAGTC 2 cut(s) 342, 600
PscI ACATGT 1 cut(s) 531
Psp6I CCWGG 1 cut(s) 920
PspFI CCCAGC 1 cut(s) 1091
PspGI CCWGG 1 cut(s) 920
PspLI CGTACG 1 cut(s) 894
PspN4I GGNNCC 3 cut(s) 105, 798, 957
PstI CTGCAG 1 cut(s) 949
PsuI RGATCY 1 cut(s) 14
PvuII CAGCTG 1 cut(s) 803
RsaI GTAC 2 cut(s) 896, 1036
RsaNI GTAC 2 cut(s) 895, 1035
SaqAI TTAA 1 cut(s) 827
SatI GCNGC 4 cut(s) 486, 864, 945, 990
Sau3AI GATC 4 cut(s) 14, 202, 207, 701
SchI GAGTC 2 cut(s) 342, 600
ScrFI CCNGG 2 cut(s) 86, 922
SduI GDGCHC 1 cut(s) 518
SfaNI GCATC 4 cut(s) 14, 89, 243, 251
SfcI CTRYAG 1 cut(s) 945
SgrAI CRCCGGYG 1 cut(s) 226
Sse9I AATT 6 cut(s) 176, 296, 470, 564, 656, 980
SsiI CCGC 2 cut(s) 413, 485
SspI AATATT 1 cut(s) 825
SspMI CTAG 3 cut(s) 429, 1061, 1088
StyD4I CCNGG 2 cut(s) 84, 920
StyI CCWWGG 1 cut(s) 610
TaaI ACNGT 6 cut(s) 65, 135, 160, 419, 467, 571
TaiI ACGT 2 cut(s) 35, 446
TaqI TCGA 4 cut(s) 195, 660, 686, 1121
TasI AATT 6 cut(s) 176, 296, 470, 564, 656, 980
TauI GCSGC 1 cut(s) 488
TfiI GAWTC 3 cut(s) 683, 872, 890
Tru1I TTAA 1 cut(s) 827
Tru9I TTAA 1 cut(s) 827
TscAI CASTG 4 cut(s) 63, 165, 424, 874
TseFI GTSAC 3 cut(s) 54, 160, 694
TseI GCWGC 3 cut(s) 863, 944, 989
Tsp45I GTSAC 3 cut(s) 54, 160, 694
TspDTI ATGAA 7 cut(s) 309, 324, 413, 564, 770, 849, 1113
TspRI CASTG 4 cut(s) 63, 165, 424, 874
XagI CCTNNNNNAGG 1 cut(s) 734
XapI RAATTY 1 cut(s) 980
XbaI TCTAGA 1 cut(s) 1060
XceI RCATGY 3 cut(s) 535, 680, 1131
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 3 cut(s) 429, 1061, 1088
ZraI GACGTC 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.