FvH4_6g38383

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000275
Physical Location & Seq
Reverse (-)
30344527 .. 30344739
213 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38383.t1

Sequence Viewer

Length: 213 bp
ATGGGTGCAGTTGAAGGCTACAGAATTGCAGGAGGACCTCTCGGTGAAGTTGTAGACCCTTTGTACCCTGGGGGGAGCTTTGACCCCTTAGGGCTTGCAGACGATCCTGAGGCTTTTGCTGAGCTTAAAGTGAAGGAGCTCAAGAAGATTAGCCATGTTCTCCATGTTCGGGTTTTTTGTGCAAGCTATTGTGACAGGAAATGGACCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00196 ko01100 map00196 map01100
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

71

Amino Acids

7.64

Weight (kDa)

5.21

Isoelectric Point (pI)

4.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 1 - 48 3e-07 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis pycom09g04690
rosa_chinensis RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 54
AclWI GGATC 1 cut(s) 98
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 1 cut(s) 14
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 4 cut(s) 78, 124, 139, 186
AluI AGCT 4 cut(s) 78, 124, 139, 186
Alw21I GWGCWC 1 cut(s) 141
AlwI GGATC 1 cut(s) 98
AspS9I GGNCC 2 cut(s) 35, 204
AsuHPI GGTGA 1 cut(s) 56
AvaII GGWCC 2 cut(s) 35, 204
AxyI CCTNAGG 2 cut(s) 88, 108
BanII GRGCYC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 141
BciT130I CCWGG 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 19
BlpI GCTNAGC 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 2 cut(s) 35, 204
BmgT120I GGNCC 2 cut(s) 35, 204
BmrFI CCNGG 1 cut(s) 69
BplI GAGNNNNNCTC 2 cut(s) 24, 56
Bpu1102I GCTNAGC 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 67, 68
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse21I CCTNAGG 2 cut(s) 88, 108
BseBI CCWGG 1 cut(s) 69
BseDI CCNNGG 2 cut(s) 67, 68
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 2 cut(s) 99, 111
BsgI GTGCAG 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 1 cut(s) 103
Bsp1720I GCTNAGC 1 cut(s) 120
BspCNI CTCAG 2 cut(s) 100, 112
BspPI GGATC 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 67, 68
BssMI GATC 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 69
BstC8I GCNNGC 2 cut(s) 96, 184
BstDEI CTNAG 3 cut(s) 88, 108, 120
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstNI CCWGG 1 cut(s) 69
BstSCI CCNGG 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 19
Bsu36I CCTNAGG 2 cut(s) 88, 108
Cac8I GCNNGC 2 cut(s) 96, 184
Cfr13I GGNCC 2 cut(s) 35, 204
Csp6I GTAC 1 cut(s) 64
CviAII CATG 2 cut(s) 155, 164
CviJI RGCY 8 cut(s) 18, 78, 94, 113, 124, 139, 153, 186
CviKI_1 RGCY 8 cut(s) 18, 78, 94, 113, 124, 139, 153, 186
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 3 cut(s) 88, 108, 120
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 141
Eco47I GGWCC 2 cut(s) 35, 204
Eco53kI GAGCTC 1 cut(s) 139
Eco81I CCTNAGG 2 cut(s) 88, 108
EcoICRI GAGCTC 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 141
FaeI CATG 2 cut(s) 158, 167
FaiI YATR 2 cut(s) 156, 165
FatI CATG 2 cut(s) 154, 163
FblI GTMKAC 1 cut(s) 54
FriOI GRGCYC 1 cut(s) 141
Hin1II CATG 2 cut(s) 158, 167
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 55
Hpy188III TCNNGA 2 cut(s) 107, 142
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 2 cut(s) 8, 127
HpyCH4V TGCA 4 cut(s) 8, 29, 98, 182
HpyF3I CTNAG 3 cut(s) 88, 108, 120
Hsp92II CATG 2 cut(s) 158, 167
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 2 cut(s) 75, 136
LpnPI CCDG 5 cut(s) 15, 54, 81, 120, 181
MaeIII GTNAC 1 cut(s) 191
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 1 cut(s) 24
MnlI CCTC 3 cut(s) 26, 48, 103
MseI TTAA 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 69
NdeII GATC 1 cut(s) 103
NlaIII CATG 2 cut(s) 158, 167
NmuCI GTSAC 1 cut(s) 191
PasI CCCWGGG 1 cut(s) 68
PpuMI RGGWCCY 1 cut(s) 35
Psp124BI GAGCTC 1 cut(s) 141
Psp5II RGGWCCY 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspPI GGNCC 2 cut(s) 35, 204
PspPPI RGGWCCY 1 cut(s) 35
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SacI GAGCTC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 126
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 2 cut(s) 35, 204
ScrFI CCNGG 1 cut(s) 69
SduI GDGCHC 1 cut(s) 141
SetI ASST 5 cut(s) 40, 80, 126, 141, 188
SfcI CTRYAG 1 cut(s) 19
SinI GGWCC 2 cut(s) 35, 204
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 1 cut(s) 24
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 67
TasI AATT 1 cut(s) 24
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseFI GTSAC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 191
VpaK11BI GGWCC 2 cut(s) 35, 204
XmiI GTMKAC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.