The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 242 - 288 | 1.1e-07 | PPR repeat family |
| PPR | PF01535 | 278 - 308 | 5.4e-06 | PPR repeat |
| PPR_2 | PF13041 | 412 - 460 | 6.7e-10 | PPR repeat family |
| PPR | PF01535 | 415 - 445 | 8.1e-06 | PPR repeat |
| PPR_2 | PF13041 | 514 - 561 | 1.9e-11 | PPR repeat family |
| PPR | PF01535 | 516 - 545 | 4.5e-07 | PPR repeat |
| E_motif | PF20431 | 631 - 693 | 3.5e-15 | E motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 170 |
| AccII | CGCG | 1 cut(s) | 876 |
| AciI | CCGC | 5 cut(s) | 306, 874, 876, 1796, 1995 |
| AclWI | GGATC | 1 cut(s) | 2033 |
| AcoI | YGGCCR | 3 cut(s) | 871, 1789, 1953 |
| AcsI | RAATTY | 3 cut(s) | 226, 1410, 1608 |
| AcuI | CTGAAG | 2 cut(s) | 89, 957 |
| AfaI | GTAC | 8 cut(s) | 162, 256, 412, 1037, 1335, 1481, 2166, 2193 |
| AfeI | AGCGCT | 2 cut(s) | 942, 1867 |
| AflIII | ACRYGT | 1 cut(s) | 1965 |
| AgsI | TTSAA | 8 cut(s) | 184, 407, 623, 1265, 1639, 1936, 2171, 2213 |
| AjiI | CACGTC | 1 cut(s) | 356 |
| AjnI | CCWGG | 1 cut(s) | 540 |
| AluBI | AGCT | 6 cut(s) | 103, 723, 753, 1210, 1962, 2070 |
| AluI | AGCT | 6 cut(s) | 103, 723, 753, 1210, 1962, 2070 |
| Alw21I | GWGCWC | 2 cut(s) | 970, 1764 |
| Alw26I | GTCTC | 3 cut(s) | 462, 920, 1302 |
| AlwI | GGATC | 1 cut(s) | 2033 |
| Aor51HI | AGCGCT | 2 cut(s) | 942, 1867 |
| AoxI | GGCC | 4 cut(s) | 552, 871, 1789, 1953 |
| ApeKI | GCWGC | 3 cut(s) | 329, 1388, 1988 |
| ApoI | RAATTY | 3 cut(s) | 226, 1410, 1608 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 498, 530 |
| AseI | ATTAAT | 2 cut(s) | 342, 1395 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1308, 2208 |
| AspLEI | GCGC | 2 cut(s) | 943, 1868 |
| AspS9I | GGNCC | 1 cut(s) | 552 |
| AsuC2I | CCSGG | 2 cut(s) | 1957, 2060 |
| AsuHPI | GGTGA | 4 cut(s) | 230, 890, 1126, 1604 |
| AsuII | TTCGAA | 1 cut(s) | 1029 |
| AsuNHI | GCTAGC | 1 cut(s) | 1991 |
| BbsI | GAAGAC | 2 cut(s) | 511, 890 |
| Bbv12I | GWGCWC | 2 cut(s) | 970, 1764 |
| BbvI | GCAGC | 3 cut(s) | 341, 1400, 1975 |
| BccI | CCATC | 9 cut(s) | 211, 518, 646, 770, 796, 806, 1432, 1615, 1995 |
| BceAI | ACGGC | 1 cut(s) | 1776 |
| BciT130I | CCWGG | 1 cut(s) | 542 |
| BciVI | GTATCC | 1 cut(s) | 2159 |
| BclI | TGATCA | 3 cut(s) | 189, 235, 1470 |
| BcnI | CCSGG | 2 cut(s) | 1957, 2060 |
| BcoDI | GTCTC | 3 cut(s) | 462, 920, 1302 |
| BfaI | CTAG | 6 cut(s) | 365, 750, 1133, 1211, 1694, 1992 |
| BfoI | RGCGCY | 2 cut(s) | 944, 1869 |
| BfuI | GTATCC | 1 cut(s) | 2159 |
| BisI | GCNGC | 4 cut(s) | 330, 874, 1389, 1989 |
| BlsI | GCNGC | 4 cut(s) | 331, 875, 1390, 1990 |
| BmcAI | AGTACT | 2 cut(s) | 1037, 1335 |
| Bme1390I | CCNGG | 3 cut(s) | 542, 1957, 2060 |
| BmgBI | CACGTC | 1 cut(s) | 356 |
| BmgT120I | GGNCC | 1 cut(s) | 552 |
| BmiI | GGNNCC | 1 cut(s) | 822 |
| BmrFI | CCNGG | 3 cut(s) | 542, 1957, 2060 |
| BmrI | ACTGGG | 1 cut(s) | 394 |
| BmsI | GCATC | 8 cut(s) | 163, 364, 791, 1107, 1204, 1308, 1569, 1878 |
| BmtI | GCTAGC | 1 cut(s) | 1995 |
| BmuI | ACTGGG | 1 cut(s) | 394 |
| BpiI | GAAGAC | 2 cut(s) | 511, 890 |
| BpmI | CTGGAG | 1 cut(s) | 1882 |
| Bpu14I | TTCGAA | 1 cut(s) | 1029 |
| BpuMI | CCSGG | 2 cut(s) | 1957, 2060 |
| BsaBI | GATNNNNATC | 2 cut(s) | 36, 1218 |
| BsaJI | CCNNGG | 5 cut(s) | 540, 874, 888, 1701, 2059 |
| BsaWI | WCCGGW | 1 cut(s) | 157 |
| Bse1I | ACTGG | 4 cut(s) | 400, 1223, 1285, 2238 |
| Bse3DI | GCAATG | 1 cut(s) | 257 |
| Bse8I | GATNNNNATC | 2 cut(s) | 36, 1218 |
| BseBI | CCWGG | 1 cut(s) | 542 |
| BseDI | CCNNGG | 5 cut(s) | 540, 874, 888, 1701, 2059 |
| BseGI | GGATG | 9 cut(s) | 154, 197, 203, 413, 807, 1219, 1584, 1626, 1893 |
| BseJI | GATNNNNATC | 2 cut(s) | 36, 1218 |
| BseMI | GCAATG | 1 cut(s) | 257 |
| BseMII | CTCAG | 3 cut(s) | 777, 2043, 2118 |
| BseNI | ACTGG | 4 cut(s) | 400, 1223, 1285, 2238 |
| BseXI | GCAGC | 3 cut(s) | 341, 1400, 1975 |
| BseYI | CCCAGC | 2 cut(s) | 99, 1206 |
| BsgI | GTGCAG | 1 cut(s) | 1398 |
| Bsh1236I | CGCG | 1 cut(s) | 876 |
| BshFI | GGCC | 4 cut(s) | 554, 873, 1791, 1955 |
| BsiHKAI | GWGCWC | 2 cut(s) | 970, 1764 |
| BsiSI | CCGG | 4 cut(s) | 158, 247, 1956, 2059 |
| BsmAI | GTCTC | 3 cut(s) | 462, 920, 1302 |
| BsmI | GAATGC | 3 cut(s) | 439, 1150, 1603 |
| BsnI | GGCC | 4 cut(s) | 554, 873, 1791, 1955 |
| Bsp119I | TTCGAA | 1 cut(s) | 1029 |
| Bsp1286I | GDGCHC | 2 cut(s) | 970, 1764 |
| Bsp1407I | TGTACA | 1 cut(s) | 1479 |
| Bsp143I | GATC | 7 cut(s) | 37, 79, 189, 235, 1152, 1470, 2025 |
| Bsp19I | CCATGG | 1 cut(s) | 888 |
| BspACI | CCGC | 5 cut(s) | 306, 874, 876, 1796, 1995 |
| BspANI | GGCC | 4 cut(s) | 554, 873, 1791, 1955 |
| BspCNI | CTCAG | 3 cut(s) | 778, 2042, 2117 |
| BspFNI | CGCG | 1 cut(s) | 876 |
| BspLI | GGNNCC | 1 cut(s) | 822 |
| BspOI | GCTAGC | 1 cut(s) | 1995 |
| BspPI | GGATC | 1 cut(s) | 2033 |
| BspQI | GCTCTTC | 1 cut(s) | 1875 |
| BspT104I | TTCGAA | 1 cut(s) | 1029 |
| BsrDI | GCAATG | 1 cut(s) | 257 |
| BsrGI | TGTACA | 1 cut(s) | 1479 |
| BsrI | ACTGG | 4 cut(s) | 400, 1223, 1285, 2238 |
| BssECI | CCNNGG | 5 cut(s) | 540, 874, 888, 1701, 2059 |
| BssMI | GATC | 7 cut(s) | 37, 79, 189, 235, 1152, 1470, 2025 |
| BssT1I | CCWWGG | 1 cut(s) | 888 |
| Bst2UI | CCWGG | 1 cut(s) | 542 |
| Bst4CI | ACNGT | 3 cut(s) | 272, 699, 1535 |
| Bst6I | CTCTTC | 3 cut(s) | 540, 1026, 1875 |
| BstAUI | TGTACA | 1 cut(s) | 1479 |
| BstBI | TTCGAA | 1 cut(s) | 1029 |
| BstC8I | GCNNGC | 6 cut(s) | 691, 945, 1771, 1993, 2124, 2128 |
| BstDEI | CTNAG | 5 cut(s) | 443, 786, 1604, 2029, 2104 |
| BstDSI | CCRYGG | 2 cut(s) | 874, 888 |
| BstF5I | GGATG | 9 cut(s) | 154, 197, 203, 413, 807, 1219, 1584, 1626, 1893 |
| BstFNI | CGCG | 1 cut(s) | 876 |
| BstH2I | RGCGCY | 2 cut(s) | 944, 1869 |
| BstHHI | GCGC | 2 cut(s) | 943, 1868 |
| BstKTI | GATC | 7 cut(s) | 40, 82, 192, 238, 1155, 1473, 2028 |
| BstMAI | GTCTC | 3 cut(s) | 462, 920, 1302 |
| BstMBI | GATC | 7 cut(s) | 37, 79, 189, 235, 1152, 1470, 2025 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 326, 720, 974, 1385 |
| BstNI | CCWGG | 1 cut(s) | 542 |
| BstNSI | RCATGY | 5 cut(s) | 424, 1069, 1773, 1837, 1969 |
| BstSCI | CCNGG | 3 cut(s) | 540, 1955, 2058 |
| BstUI | CGCG | 1 cut(s) | 876 |
| BstV1I | GCAGC | 3 cut(s) | 341, 1400, 1975 |
| BstV2I | GAAGAC | 2 cut(s) | 511, 890 |
| BstX2I | RGATCY | 1 cut(s) | 2025 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1730 |
| BstYI | RGATCY | 1 cut(s) | 2025 |
| BsuI | GTATCC | 1 cut(s) | 2159 |
| BsuRI | GGCC | 4 cut(s) | 554, 873, 1791, 1955 |
| BtgI | CCRYGG | 2 cut(s) | 874, 888 |
| BtgZI | GCGATG | 1 cut(s) | 1645 |
| BtrI | CACGTC | 1 cut(s) | 356 |
| BtsCI | GGATG | 9 cut(s) | 154, 197, 203, 413, 807, 1219, 1584, 1626, 1893 |
| BtsI | GCAGTG | 1 cut(s) | 49 |
| BtsIMutI | CAGTG | 3 cut(s) | 49, 268, 1278 |
| Cac8I | GCNNGC | 6 cut(s) | 691, 945, 1771, 1993, 2124, 2128 |
| CfoI | GCGC | 2 cut(s) | 943, 1868 |
| Cfr13I | GGNCC | 1 cut(s) | 552 |
| Cfr42I | CCGCGG | 1 cut(s) | 877 |
| Csp6I | GTAC | 8 cut(s) | 161, 255, 411, 1036, 1334, 1480, 2165, 2192 |
| CviQI | GTAC | 8 cut(s) | 161, 255, 411, 1036, 1334, 1480, 2165, 2192 |
| DdeI | CTNAG | 5 cut(s) | 443, 786, 1604, 2029, 2104 |
| DpnI | GATC | 7 cut(s) | 39, 81, 191, 237, 1154, 1472, 2027 |
| DpnII | GATC | 7 cut(s) | 37, 79, 189, 235, 1152, 1470, 2025 |
| EaeI | YGGCCR | 3 cut(s) | 871, 1789, 1953 |
| Eam1104I | CTCTTC | 3 cut(s) | 540, 1026, 1875 |
| EarI | CTCTTC | 3 cut(s) | 540, 1026, 1875 |
| Eco130I | CCWWGG | 1 cut(s) | 888 |
| Eco47III | AGCGCT | 2 cut(s) | 942, 1867 |
| Eco57I | CTGAAG | 2 cut(s) | 89, 957 |
| EcoO109I | RGGNCCY | 1 cut(s) | 552 |
| EcoRII | CCWGG | 1 cut(s) | 540 |
| EcoT14I | CCWWGG | 1 cut(s) | 888 |
| EcoT22I | ATGCAT | 6 cut(s) | 156, 1067, 1099, 1584, 1771, 1775 |
| ErhI | CCWWGG | 1 cut(s) | 888 |
| FauI | CCCGC | 3 cut(s) | 299, 1789, 1988 |
| FauNDI | CATATG | 2 cut(s) | 127, 1162 |
| FbaI | TGATCA | 3 cut(s) | 189, 235, 1470 |
| Fnu4HI | GCNGC | 4 cut(s) | 330, 874, 1389, 1989 |
| FokI | GGATG | 9 cut(s) | 141, 184, 190, 400, 814, 1206, 1591, 1633, 1900 |
| Fsp4HI | GCNGC | 4 cut(s) | 330, 874, 1389, 1989 |
| FspBI | CTAG | 6 cut(s) | 365, 750, 1133, 1211, 1694, 1992 |
| GlaI | GCGC | 2 cut(s) | 942, 1867 |
| GluI | GCNGC | 4 cut(s) | 330, 874, 1389, 1989 |
| GsaI | CCCAGC | 2 cut(s) | 103, 1210 |
| GsuI | CTGGAG | 1 cut(s) | 1882 |
| HaeII | RGCGCY | 2 cut(s) | 944, 1869 |
| HaeIII | GGCC | 4 cut(s) | 554, 873, 1791, 1955 |
| HapII | CCGG | 4 cut(s) | 158, 247, 1956, 2059 |
| HhaI | GCGC | 2 cut(s) | 943, 1868 |
| Hin6I | GCGC | 2 cut(s) | 941, 1866 |
| HinP1I | GCGC | 2 cut(s) | 941, 1866 |
| HincII | GTYRAC | 2 cut(s) | 985, 1780 |
| HindII | GTYRAC | 2 cut(s) | 985, 1780 |
| HinfI | GANTC | 8 cut(s) | 336, 392, 1000, 1169, 1587, 1635, 2009, 2074 |
| HpaII | CCGG | 4 cut(s) | 158, 247, 1956, 2059 |
| HphI | GGTGA | 4 cut(s) | 230, 890, 1126, 1604 |
| Hpy166II | GTNNAC | 8 cut(s) | 47, 275, 283, 531, 985, 1278, 1482, 1780 |
| Hpy188I | TCNGA | 4 cut(s) | 108, 787, 1460, 1948 |
| Hpy188III | TCNNGA | 4 cut(s) | 1301, 1627, 1861, 2213 |
| Hpy8I | GTNNAC | 8 cut(s) | 47, 275, 283, 531, 985, 1278, 1482, 1780 |
| HpyAV | CCTTC | 5 cut(s) | 251, 1499, 1793, 1805, 2029 |
| HpyCH4III | ACNGT | 3 cut(s) | 272, 699, 1535 |
| HpyCH4IV | ACGT | 1 cut(s) | 355 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 326, 720, 974, 1385 |
| HpyF3I | CTNAG | 5 cut(s) | 443, 786, 1604, 2029, 2104 |
| HpySE526I | ACGT | 1 cut(s) | 355 |
| HspAI | GCGC | 2 cut(s) | 941, 1866 |
| Ksp22I | TGATCA | 3 cut(s) | 189, 235, 1470 |
| KspI | CCGCGG | 1 cut(s) | 877 |
| Kzo9I | GATC | 7 cut(s) | 37, 79, 189, 235, 1152, 1470, 2025 |
| LguI | GCTCTTC | 1 cut(s) | 1875 |
| LmnI | GCTCC | 4 cut(s) | 820, 1759, 1863, 1959 |
| Lsp1109I | GCAGC | 3 cut(s) | 341, 1400, 1975 |
| LweI | GCATC | 8 cut(s) | 163, 364, 791, 1107, 1204, 1308, 1569, 1878 |
| MaeI | CTAG | 6 cut(s) | 365, 750, 1133, 1211, 1694, 1992 |
| MaeII | ACGT | 1 cut(s) | 355 |
| MaeIII | GTNAC | 7 cut(s) | 208, 295, 674, 832, 1348, 1651, 1696 |
| MalI | GATC | 7 cut(s) | 39, 81, 191, 237, 1154, 1472, 2027 |
| MboI | GATC | 7 cut(s) | 37, 79, 189, 235, 1152, 1470, 2025 |
| MboII | GAAGA | 9 cut(s) | 71, 74, 516, 527, 895, 1009, 1043, 1862, 1925 |
| MfeI | CAATTG | 1 cut(s) | 1342 |
| MflI | RGATCY | 1 cut(s) | 2025 |
| MhlI | GDGCHC | 2 cut(s) | 970, 1764 |
| MlyI | GAGTC | 4 cut(s) | 330, 386, 1581, 2003 |
| MmeI | TCCRAC | 5 cut(s) | 441, 798, 1121, 1229, 1438 |
| Mph1103I | ATGCAT | 6 cut(s) | 156, 1067, 1099, 1584, 1771, 1775 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1308, 2208 |
| MseI | TTAA | 8 cut(s) | 342, 483, 762, 795, 1395, 2048, 2082, 2138 |
| MslI | CAYNNNNRTG | 9 cut(s) | 14, 54, 600, 633, 1008, 1060, 1419, 1838, 1970 |
| MspA1I | CMGCKG | 1 cut(s) | 876 |
| MspI | CCGG | 4 cut(s) | 158, 247, 1956, 2059 |
| MspR9I | CCNGG | 3 cut(s) | 542, 1957, 2060 |
| MunI | CAATTG | 1 cut(s) | 1342 |
| Mva1269I | GAATGC | 3 cut(s) | 439, 1150, 1603 |
| MvaI | CCWGG | 1 cut(s) | 542 |
| MvnI | CGCG | 1 cut(s) | 876 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 326, 720, 974, 1385 |
| NciI | CCSGG | 2 cut(s) | 1957, 2060 |
| NcoI | CCATGG | 1 cut(s) | 888 |
| NdeI | CATATG | 2 cut(s) | 127, 1162 |
| NdeII | GATC | 7 cut(s) | 37, 79, 189, 235, 1152, 1470, 2025 |
| NheI | GCTAGC | 1 cut(s) | 1991 |
| NlaIV | GGNNCC | 1 cut(s) | 822 |
| NmeAIII | GCCGAG | 1 cut(s) | 1991 |
| NmuCI | GTSAC | 2 cut(s) | 832, 1348 |
| NsiI | ATGCAT | 6 cut(s) | 156, 1067, 1099, 1584, 1771, 1775 |
| NspI | RCATGY | 5 cut(s) | 424, 1069, 1773, 1837, 1969 |
| NspV | TTCGAA | 1 cut(s) | 1029 |
| PaeI | GCATGC | 1 cut(s) | 1773 |
| PciI | ACATGT | 1 cut(s) | 1965 |
| PciSI | GCTCTTC | 1 cut(s) | 1875 |
| PctI | GAATGC | 3 cut(s) | 439, 1150, 1603 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1308, 2208 |
| PfeI | GAWTC | 4 cut(s) | 1000, 1169, 1635, 2074 |
| PkrI | GCNGC | 4 cut(s) | 331, 875, 1390, 1990 |
| PleI | GAGTC | 4 cut(s) | 330, 386, 1581, 2003 |
| PpsI | GAGTC | 4 cut(s) | 330, 386, 1581, 2003 |
| PscI | ACATGT | 1 cut(s) | 1965 |
| PshBI | ATTAAT | 2 cut(s) | 342, 1395 |
| PsiI | TTATAA | 1 cut(s) | 170 |
| Psp6I | CCWGG | 1 cut(s) | 540 |
| PspFI | CCCAGC | 2 cut(s) | 99, 1206 |
| PspGI | CCWGG | 1 cut(s) | 540 |
| PspN4I | GGNNCC | 1 cut(s) | 822 |
| PspPI | GGNCC | 1 cut(s) | 552 |
| PsuI | RGATCY | 1 cut(s) | 2025 |
| RsaI | GTAC | 8 cut(s) | 162, 256, 412, 1037, 1335, 1481, 2166, 2193 |
| RsaNI | GTAC | 8 cut(s) | 161, 255, 411, 1036, 1334, 1480, 2165, 2192 |
| RseI | CAYNNNNRTG | 9 cut(s) | 14, 54, 600, 633, 1008, 1060, 1419, 1838, 1970 |
| SacII | CCGCGG | 1 cut(s) | 877 |
| SapI | GCTCTTC | 1 cut(s) | 1875 |
| SaqAI | TTAA | 8 cut(s) | 342, 483, 762, 795, 1395, 2048, 2082, 2138 |
| SatI | GCNGC | 4 cut(s) | 330, 874, 1389, 1989 |
| Sau3AI | GATC | 7 cut(s) | 37, 79, 189, 235, 1152, 1470, 2025 |
| Sau96I | GGNCC | 1 cut(s) | 552 |
| ScaI | AGTACT | 2 cut(s) | 1037, 1335 |
| SchI | GAGTC | 4 cut(s) | 330, 386, 1581, 2003 |
| ScrFI | CCNGG | 3 cut(s) | 542, 1957, 2060 |
| SduI | GDGCHC | 2 cut(s) | 970, 1764 |
| SfaNI | GCATC | 8 cut(s) | 163, 364, 791, 1107, 1204, 1308, 1569, 1878 |
| Sfr303I | CCGCGG | 1 cut(s) | 877 |
| SfuI | TTCGAA | 1 cut(s) | 1029 |
| SgrBI | CCGCGG | 1 cut(s) | 877 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 14, 54, 600, 633, 1008, 1060, 1419, 1838, 1970 |
| SphI | GCATGC | 1 cut(s) | 1773 |
| SsiI | CCGC | 5 cut(s) | 306, 874, 876, 1796, 1995 |
| SspI | AATATT | 4 cut(s) | 1200, 1528, 1981, 2221 |
| SspMI | CTAG | 6 cut(s) | 365, 750, 1133, 1211, 1694, 1992 |
| StyD4I | CCNGG | 3 cut(s) | 540, 1955, 2058 |
| StyI | CCWWGG | 1 cut(s) | 888 |
| TaaI | ACNGT | 3 cut(s) | 272, 699, 1535 |
| TaiI | ACGT | 1 cut(s) | 358 |
| TaqI | TCGA | 1 cut(s) | 1029 |
| TatI | WGTACW | 4 cut(s) | 254, 1035, 1333, 1479 |
| TauI | GCSGC | 1 cut(s) | 876 |
| TfiI | GAWTC | 4 cut(s) | 1000, 1169, 1635, 2074 |
| Tru1I | TTAA | 8 cut(s) | 342, 483, 762, 795, 1395, 2048, 2082, 2138 |
| Tru9I | TTAA | 8 cut(s) | 342, 483, 762, 795, 1395, 2048, 2082, 2138 |
| TscAI | CASTG | 3 cut(s) | 49, 275, 1285 |
| TseFI | GTSAC | 2 cut(s) | 832, 1348 |
| TseI | GCWGC | 3 cut(s) | 329, 1388, 1988 |
| Tsp45I | GTSAC | 2 cut(s) | 832, 1348 |
| TspDTI | ATGAA | 9 cut(s) | 72, 486, 992, 1403, 1604, 1648, 1856, 1955, 2132 |
| TspGWI | ACGGA | 1 cut(s) | 196 |
| TspRI | CASTG | 3 cut(s) | 49, 275, 1285 |
| VspI | ATTAAT | 2 cut(s) | 342, 1395 |
| XapI | RAATTY | 3 cut(s) | 226, 1410, 1608 |
| XceI | RCATGY | 5 cut(s) | 424, 1069, 1773, 1837, 1969 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1308, 2208 |
| XspI | CTAG | 6 cut(s) | 365, 750, 1133, 1211, 1694, 1992 |
| ZrmI | AGTACT | 2 cut(s) | 1037, 1335 |
| Zsp2I | ATGCAT | 6 cut(s) | 156, 1067, 1099, 1584, 1771, 1775 |