Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Forward (+)

73484187 .. 73485033

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34299

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCTTCTTCAGTAATGGCTCTCTCCTCCCCTTCTCTAGCTGGCCAAGCTGTGAAGCTCAGTCCCTCCACATCTAATCTCCTTGGTGAGGGCCGAGTCACCATGCGCAAAACTGCAGCCAAGTCGAAAAATGTGTCCTCTGGCAGCCCTTGGTATGGTGCGGACCGTGTTAAGTACTTGGGCCCATTCTCCGGTGAGGCTCCATCTTACCTCACAGGAGAGTTTCCCGGGGACTACGGTTGGGACACTGCTGGGCTATCAGCATCTCCTAGCCCGCAATGGAGTCAAGTTCGCGAGGGTGGGTTAGATTACTTGGGAAACCCGAGCTTAGTCCATGCCCAAAGCATTTTGGCAATTTGGGCCACGCAGGTCATCTTGATGGGTGCGGTTGAAGGCTATAGAATTGCCGGTGGGCCTCTTGGTGAGGTGGTAGACCCATTGTACCCTGGTGGGAGCTTTGATCCATTAGGACTTGCTGAAGATCCAGAGGCATTTGCAGAACTCAAGGTGAAGGAGCTAAAGAATGGGAGATTAGCCATGTTTTCCATGTTCGGATTTTTCGTGCAAGCCATTGTCACCGGAAAGGGACCAATCGAAAACCTCGCTGACCACTTGGCTGACCCTGTTAACAACAATGCTTGGTCATATGCAACAAACTTTGTTCCCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

224

Amino Acids

23.57

Weight (kDa)

5.2

Isoelectric Point (pI)

28.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	113 - 191	4.9e-22	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	107
Acc36I	ACCTGC	1 cut(s)	358
AccI	GTMKAC	1 cut(s)	432
AccII	CGCG	1 cut(s)	294
AciI	CCGC	3 cut(s)	161, 275, 386
AclWI	GGATC	2 cut(s)	455, 476
AcoI	YGGCCR	1 cut(s)	43
AcuI	CTGAAG	1 cut(s)	498
AfaI	GTAC	2 cut(s)	176, 443
AfiI	CCNNNNNNNGG	3 cut(s)	88, 155, 191
AgsI	TTSAA	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	6 cut(s)	41, 50, 58, 327, 456, 517
AluI	AGCT	6 cut(s)	41, 50, 58, 327, 456, 517
AlwI	GGATC	2 cut(s)	455, 476
Ama87I	CYCGRG	2 cut(s)	227, 322
AoxI	GGCC	5 cut(s)	43, 91, 181, 360, 413
ApaI	GGGCCC	1 cut(s)	185
ApeKI	GCWGC	2 cut(s)	116, 144
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	7 cut(s)	91, 163, 181, 182, 360, 413, 587
AsuC2I	CCSGG	3 cut(s)	228, 229, 666
AsuHPI	GGTGA	6 cut(s)	91, 98, 206, 434, 520, 568
AvaI	CYCGRG	2 cut(s)	227, 322
AvaII	GGWCC	2 cut(s)	163, 587
BaeGI	GKGCMC	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	185
BbvI	GCAGC	2 cut(s)	128, 156
BccI	CCATC	2 cut(s)	211, 373
BcgI	CGANNNNNNTGC	2 cut(s)	105, 139
BciT130I	CCWGG	1 cut(s)	447
BcnI	CCSGG	3 cut(s)	228, 229, 666
BfaI	CTAG	2 cut(s)	38, 270
BfmI	CTRYAG	2 cut(s)	114, 397
BfuAI	ACCTGC	1 cut(s)	358
BisI	GCNGC	2 cut(s)	117, 145
BlsI	GCNGC	2 cut(s)	118, 146
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	4 cut(s)	228, 229, 447, 666
Bme18I	GGWCC	2 cut(s)	163, 587
BmeT110I	CYCGRG	2 cut(s)	227, 322
BmgT120I	GGNCC	7 cut(s)	91, 163, 181, 182, 360, 413, 587
BmiI	GGNNCC	3 cut(s)	183, 201, 588
BmrFI	CCNGG	4 cut(s)	228, 229, 447, 666
BmsI	GCATC	1 cut(s)	272
BpuEI	CTTGAG	1 cut(s)	488
BpuMI	CCSGG	3 cut(s)	228, 229, 666
BsaJI	CCNNGG	5 cut(s)	82, 149, 227, 228, 445
BsaWI	WCCGGW	2 cut(s)	191, 578
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 155, 191
Bse118I	RCCGGY	1 cut(s)	407
Bse3DI	GCAATG	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	5 cut(s)	82, 149, 227, 228, 445
BseLI	CCNNNNNNNGG	3 cut(s)	88, 155, 191
BseMI	GCAATG	1 cut(s)	284
BseMII	CTCAG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	16
BseSI	GKGCMC	1 cut(s)	185
BseXI	GCAGC	2 cut(s)	128, 156
BseYI	CCCAGC	1 cut(s)	251
Bsh1236I	CGCG	1 cut(s)	294
BshFI	GGCC	5 cut(s)	45, 93, 183, 362, 415
BsiHKCI	CYCGRG	2 cut(s)	227, 322
BsiSI	CCGG	5 cut(s)	192, 228, 408, 579, 666
BslFI	GGGAC	4 cut(s)	48, 245, 257, 600
BslI	CCNNNNNNNGG	3 cut(s)	88, 155, 191
BsmFI	GGGAC	4 cut(s)	48, 245, 257, 600
BsnI	GGCC	5 cut(s)	45, 93, 183, 362, 415
BsoBI	CYCGRG	2 cut(s)	227, 322
Bsp120I	GGGCCC	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	2 cut(s)	460, 481
Bsp68I	TCGCGA	1 cut(s)	294
BspACI	CCGC	3 cut(s)	161, 275, 386
BspANI	GGCC	5 cut(s)	45, 93, 183, 362, 415
BspCNI	CTCAG	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	294
BspLI	GGNNCC	3 cut(s)	183, 201, 588
BspMAI	CTGCAG	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	358
BspPI	GGATC	2 cut(s)	455, 476
BsrDI	GCAATG	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	407
BssAI	RCCGGY	1 cut(s)	407
BssECI	CCNNGG	5 cut(s)	82, 149, 227, 228, 445
BssMI	GATC	2 cut(s)	460, 481
BssT1I	CCWWGG	2 cut(s)	82, 149
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	2 cut(s)	167, 239
BstC8I	GCNNGC	3 cut(s)	43, 275, 567
BstDEI	CTNAG	2 cut(s)	59, 328
BstENI	CCTNNNNNAGG	1 cut(s)	86
BstFNI	CGCG	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	2 cut(s)	463, 484
BstMBI	GATC	2 cut(s)	460, 481
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 359
BstNI	CCWGG	1 cut(s)	447
BstSCI	CCNGG	4 cut(s)	226, 227, 445, 664
BstSFI	CTRYAG	2 cut(s)	114, 397
BstSLI	GKGCMC	1 cut(s)	185
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	128, 156
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BsuRI	GGCC	5 cut(s)	45, 93, 183, 362, 415
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
BtuMI	TCGCGA	1 cut(s)	294
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	3 cut(s)	43, 275, 567
CfoI	GCGC	1 cut(s)	108
Cfr10I	RCCGGY	1 cut(s)	407
Cfr13I	GGNCC	7 cut(s)	91, 163, 181, 182, 360, 413, 587
Cfr9I	CCCGGG	1 cut(s)	227
CpoI	CGGWCCG	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	175, 442
CspI	CGGWCCG	1 cut(s)	163
CviAII	CATG	4 cut(s)	103, 335, 538, 547
CviQI	GTAC	2 cut(s)	175, 442
DdeI	CTNAG	2 cut(s)	59, 328
DpnI	GATC	2 cut(s)	462, 483
DpnII	GATC	2 cut(s)	460, 481
EaeI	YGGCCR	1 cut(s)	43
Eco130I	CCWWGG	2 cut(s)	82, 149
Eco24I	GRGCYC	1 cut(s)	185
Eco47I	GGWCC	2 cut(s)	163, 587
Eco57I	CTGAAG	1 cut(s)	498
Eco88I	CYCGRG	2 cut(s)	227, 322
EcoNI	CCTNNNNNAGG	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	445
EcoT14I	CCWWGG	2 cut(s)	82, 149
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	2 cut(s)	82, 149
FaeI	CATG	4 cut(s)	106, 338, 541, 550
FaiI	YATR	8 cut(s)	104, 156, 336, 399, 539, 548, 646, 648
FaqI	GGGAC	4 cut(s)	48, 245, 257, 600
FatI	CATG	4 cut(s)	102, 334, 537, 546
FauI	CCCGC	1 cut(s)	282
FauNDI	CATATG	1 cut(s)	646
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	2 cut(s)	117, 145
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	2 cut(s)	117, 145
FspBI	CTAG	2 cut(s)	38, 270
FspI	TGCGCA	1 cut(s)	107
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	2 cut(s)	117, 145
GsaI	CCCAGC	1 cut(s)	255
HaeIII	GGCC	5 cut(s)	45, 93, 183, 362, 415
HapII	CCGG	5 cut(s)	192, 228, 408, 579, 666
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	4 cut(s)	106, 338, 541, 550
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HinfI	GANTC	2 cut(s)	96, 283
HpaI	GTTAAC	1 cut(s)	628
HpaII	CCGG	5 cut(s)	192, 228, 408, 579, 666
HphI	GGTGA	6 cut(s)	91, 98, 206, 434, 520, 568
Hpy166II	GTNNAC	2 cut(s)	433, 628
Hpy188I	TCNGA	1 cut(s)	554
Hpy188III	TCNNGA	3 cut(s)	293, 376, 485
Hpy8I	GTNNAC	2 cut(s)	433, 628
HpyAV	CCTTC	3 cut(s)	42, 386, 505
HpyCH4III	ACNGT	2 cut(s)	167, 239
HpyCH4V	TGCA	4 cut(s)	116, 497, 565, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 359
HpyF3I	CTNAG	2 cut(s)	59, 328
Hsp92II	CATG	4 cut(s)	106, 338, 541, 550
HspAI	GCGC	1 cut(s)	106
KspAI	GTTAAC	1 cut(s)	628
Kzo9I	GATC	2 cut(s)	460, 481
LmnI	GCTCC	3 cut(s)	205, 453, 514
Lsp1109I	GCAGC	2 cut(s)	128, 156
LweI	GCATC	1 cut(s)	272
MaeI	CTAG	2 cut(s)	38, 270
MaeIII	GTNAC	2 cut(s)	97, 574
MalI	GATC	2 cut(s)	462, 483
MboI	GATC	2 cut(s)	460, 481
MboII	GAAGA	1 cut(s)	491
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	1 cut(s)	185
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	2 cut(s)	354, 402
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	2 cut(s)	105, 292
Mox20I	TGGCCA	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	2 cut(s)	171, 627
MslI	CAYNNNNRTG	1 cut(s)	377
Msp20I	TGGCCA	1 cut(s)	45
MspI	CCGG	5 cut(s)	192, 228, 408, 579, 666
MspR9I	CCNGG	4 cut(s)	228, 229, 447, 666
MvaI	CCWGG	1 cut(s)	447
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	47, 359
NciI	CCSGG	3 cut(s)	228, 229, 666
NdeI	CATATG	1 cut(s)	646
NdeII	GATC	2 cut(s)	460, 481
NlaIII	CATG	4 cut(s)	106, 338, 541, 550
NlaIV	GGNNCC	3 cut(s)	183, 201, 588
NmeAIII	GCCGAG	1 cut(s)	119
NmuCI	GTSAC	2 cut(s)	97, 574
NruI	TCGCGA	1 cut(s)	294
NsbI	TGCGCA	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	558
PfoI	TCCNGGA	1 cut(s)	664
PkrI	GCNGC	2 cut(s)	118, 146
PleI	GAGTC	2 cut(s)	104, 291
PpsI	GAGTC	2 cut(s)	104, 291
Psp6I	CCWGG	1 cut(s)	445
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	3 cut(s)	183, 201, 588
PspOMI	GGGCCC	1 cut(s)	181
PspPI	GGNCC	7 cut(s)	91, 163, 181, 182, 360, 413, 587
PstI	CTGCAG	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	481
RruI	TCGCGA	1 cut(s)	294
RsaI	GTAC	2 cut(s)	176, 443
RsaNI	GTAC	2 cut(s)	175, 442
RseI	CAYNNNNRTG	1 cut(s)	377
Rsr2I	CGGWCCG	1 cut(s)	163
RsrII	CGGWCCG	1 cut(s)	163
SaqAI	TTAA	2 cut(s)	171, 627
SatI	GCNGC	2 cut(s)	117, 145
Sau3AI	GATC	2 cut(s)	460, 481
Sau96I	GGNCC	7 cut(s)	91, 163, 181, 182, 360, 413, 587
ScaI	AGTACT	1 cut(s)	176
SchI	GAGTC	2 cut(s)	105, 292
ScrFI	CCNGG	4 cut(s)	228, 229, 447, 666
SduI	GDGCHC	1 cut(s)	185
SfaNI	GCATC	1 cut(s)	272
SfcI	CTRYAG	2 cut(s)	114, 397
SinI	GGWCC	2 cut(s)	163, 587
SmaI	CCCGGG	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	2 cut(s)	354, 402
SsiI	CCGC	3 cut(s)	161, 275, 386
SspMI	CTAG	2 cut(s)	38, 270
StyD4I	CCNGG	4 cut(s)	226, 227, 445, 664
StyI	CCWWGG	2 cut(s)	82, 149
TaaI	ACNGT	2 cut(s)	167, 239
TaqI	TCGA	2 cut(s)	125, 594
TasI	AATT	2 cut(s)	354, 402
TatI	WGTACW	1 cut(s)	174
Tru1I	TTAA	2 cut(s)	171, 627
Tru9I	TTAA	2 cut(s)	171, 627
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	2 cut(s)	97, 574
TseI	GCWGC	2 cut(s)	116, 144
Tsp45I	GTSAC	2 cut(s)	97, 574
TspMI	CCCGGG	1 cut(s)	227
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	2 cut(s)	163, 587
XagI	CCTNNNNNAGG	1 cut(s)	86
XmaI	CCCGGG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	2 cut(s)	38, 270
ZrmI	AGTACT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.