Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Forward (+)

62955549 .. 62955914

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG435000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGTGAAGGCCGAGTCACAATGCGCAAAACTGCAACCAAGTCAAAGACGGTCTCATCTATCTGGCAACCCATGGTACGGGCCCGACCGTGTCAAGTACTTGGGTCCATTCTCCGGCGAGGCACCATCTTACCTCACAGGAGAATTCCCCGGTGACTATGGTTGGGACACCGCTGGCCTCTCAGCCGATCCCGAGACTTTTGTCAAGAACCGTGAGCTCGAAGTCATCCATTCAAGATGGGCCATGCTCGGTGCCCTACGCTGTGTTTTCCCCGAACTCTTGGCTCGTAGTGGAGACACGGAGTCAAGTTCGGCGAAGCTGTTTGGTTCAAGGCCGGAGCACAAATATTCAGTGAGGGTGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

121

Amino Acids

13.46

Weight (kDa)

6.83

Isoelectric Point (pI)

51.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	41 - 100	1e-20	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	25
AccB1I	GGYRCC	2 cut(s)	121, 251
AciI	CCGC	1 cut(s)	171
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	143
AfaI	GTAC	2 cut(s)	77, 98
AfiI	CCNNNNNNNGG	2 cut(s)	77, 113
AgsI	TTSAA	2 cut(s)	234, 330
AhdI	GACNNNNNGTC	1 cut(s)	301
AluBI	AGCT	2 cut(s)	217, 319
AluI	AGCT	2 cut(s)	217, 319
Alw21I	GWGCWC	2 cut(s)	219, 342
Alw26I	GTCTC	3 cut(s)	57, 188, 288
AlwI	GGATC	1 cut(s)	182
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	5 cut(s)	9, 80, 175, 240, 332
ApaI	GGGCCC	1 cut(s)	84
ApoI	RAATTY	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	4 cut(s)	80, 81, 104, 240
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	16, 164
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	104
BaeGI	GKGCMC	2 cut(s)	84, 256
BanI	GGYRCC	2 cut(s)	121, 251
BanII	GRGCYC	2 cut(s)	84, 219
Bbv12I	GWGCWC	2 cut(s)	219, 342
BccI	CCATC	2 cut(s)	133, 231
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	3 cut(s)	57, 188, 288
BfaI	CTAG	1 cut(s)	364
BmcAI	AGTACT	1 cut(s)	98
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	104
BmeRI	GACNNNNNGTC	1 cut(s)	301
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	4 cut(s)	80, 81, 104, 240
BmiI	GGNNCC	4 cut(s)	82, 105, 123, 253
BmrFI	CCNGG	1 cut(s)	150
BoxI	GACNNNNGTC	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	71, 148
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 113
BseDI	CCNNGG	2 cut(s)	71, 148
BseGI	GGATG	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	77, 113
BseMII	CTCAG	1 cut(s)	195
BseSI	GKGCMC	2 cut(s)	84, 256
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	5 cut(s)	11, 82, 177, 242, 334
BshNI	GGYRCC	2 cut(s)	121, 251
BsiEI	CGRYCG	1 cut(s)	88
BsiHKAI	GWGCWC	2 cut(s)	219, 342
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	3 cut(s)	114, 150, 335
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	2 cut(s)	77, 113
BsmAI	GTCTC	3 cut(s)	57, 188, 288
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	5 cut(s)	11, 82, 177, 242, 334
Bso31I	GGTCTC	1 cut(s)	57
BsoBI	CYCGRG	1 cut(s)	191
Bsp120I	GGGCCC	1 cut(s)	80
Bsp1286I	GDGCHC	4 cut(s)	84, 219, 256, 342
Bsp143I	GATC	1 cut(s)	187
Bsp19I	CCATGG	1 cut(s)	71
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	5 cut(s)	11, 82, 177, 242, 334
BspCNI	CTCAG	1 cut(s)	194
BspLI	GGNNCC	4 cut(s)	82, 105, 123, 253
BspPI	GGATC	1 cut(s)	182
BspT107I	GGYRCC	2 cut(s)	121, 251
BspTNI	GGTCTC	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	71, 148
BssMI	GATC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	71
Bst4CI	ACNGT	3 cut(s)	51, 89, 212
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	181
BstDSI	CCRYGG	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	3 cut(s)	57, 188, 288
BstMBI	GATC	1 cut(s)	187
BstMCI	CGRYCG	1 cut(s)	88
BstPAI	GACNNNNGTC	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	148
BstSLI	GKGCMC	2 cut(s)	84, 256
BsuRI	GGCC	5 cut(s)	11, 82, 177, 242, 334
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	1 cut(s)	175
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	4 cut(s)	80, 81, 104, 240
Csp6I	GTAC	2 cut(s)	76, 97
CviAII	CATG	2 cut(s)	72, 244
CviJI	RGCY	9 cut(s)	11, 82, 177, 185, 217, 242, 284, 319, 334
CviKI_1	RGCY	9 cut(s)	11, 82, 177, 185, 217, 242, 284, 319, 334
CviQI	GTAC	2 cut(s)	76, 97
DdeI	CTNAG	1 cut(s)	181
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
DriI	GACNNNNNGTC	1 cut(s)	301
Eam1105I	GACNNNNNGTC	1 cut(s)	301
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	71
Eco24I	GRGCYC	2 cut(s)	84, 219
Eco31I	GGTCTC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	104
Eco53kI	GAGCTC	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	217
EcoRI	GAATTC	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	71
EcoT38I	GRGCYC	2 cut(s)	84, 219
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	2 cut(s)	75, 247
FaiI	YATR	3 cut(s)	73, 159, 245
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	2 cut(s)	71, 243
FokI	GGATG	1 cut(s)	212
FriOI	GRGCYC	2 cut(s)	84, 219
FspBI	CTAG	1 cut(s)	364
FspI	TGCGCA	1 cut(s)	25
GlaI	GCGC	1 cut(s)	25
HaeIII	GGCC	5 cut(s)	11, 82, 177, 242, 334
HapII	CCGG	3 cut(s)	114, 150, 335
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	2 cut(s)	75, 247
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	2 cut(s)	14, 302
HpaII	CCGG	3 cut(s)	114, 150, 335
HphI	GGTGA	2 cut(s)	16, 164
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188III	TCNNGA	3 cut(s)	191, 205, 234
Hpy8I	GTNNAC	1 cut(s)	361
HpyCH4III	ACNGT	3 cut(s)	51, 89, 212
HpyCH4V	TGCA	1 cut(s)	34
HpyF3I	CTNAG	1 cut(s)	181
Hsp92II	CATG	2 cut(s)	75, 247
HspAI	GCGC	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	6 cut(s)	48, 123, 127, 159, 163, 348
MaeI	CTAG	1 cut(s)	364
MaeIII	GTNAC	2 cut(s)	15, 152
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MhlI	GDGCHC	4 cut(s)	84, 219, 256, 342
MluCI	AATT	1 cut(s)	143
MlyI	GAGTC	2 cut(s)	23, 311
MnlI	CCTC	4 cut(s)	112, 143, 188, 348
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	3 cut(s)	114, 150, 335
MspR9I	CCNGG	1 cut(s)	150
NciI	CCSGG	1 cut(s)	150
NcoI	CCATGG	1 cut(s)	71
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	75, 247
NlaIV	GGNNCC	4 cut(s)	82, 105, 123, 253
NmeAIII	GCCGAG	1 cut(s)	37
NmuCI	GTSAC	2 cut(s)	15, 152
NsbI	TGCGCA	1 cut(s)	25
PflFI	GACNNNGTC	1 cut(s)	89
PleI	GAGTC	2 cut(s)	22, 310
PpsI	GAGTC	2 cut(s)	22, 310
PshAI	GACNNNNGTC	1 cut(s)	200
Psp124BI	GAGCTC	1 cut(s)	219
PspN4I	GGNNCC	4 cut(s)	82, 105, 123, 253
PspOMI	GGGCCC	1 cut(s)	80
PspPI	GGNCC	4 cut(s)	80, 81, 104, 240
PsyI	GACNNNGTC	1 cut(s)	89
RsaI	GTAC	2 cut(s)	77, 98
RsaNI	GTAC	2 cut(s)	76, 97
SacI	GAGCTC	1 cut(s)	219
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	4 cut(s)	80, 81, 104, 240
ScaI	AGTACT	1 cut(s)	98
SchI	GAGTC	2 cut(s)	23, 311
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	4 cut(s)	84, 219, 256, 342
SetI	ASST	3 cut(s)	135, 219, 321
SinI	GGWCC	1 cut(s)	104
Sse9I	AATT	1 cut(s)	143
SsiI	CCGC	1 cut(s)	171
SspI	AATATT	1 cut(s)	347
SspMI	CTAG	1 cut(s)	364
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	3 cut(s)	51, 89, 212
TaqI	TCGA	1 cut(s)	219
TasI	AATT	1 cut(s)	143
TatI	WGTACW	1 cut(s)	96
TscAI	CASTG	1 cut(s)	357
TseFI	GTSAC	2 cut(s)	15, 152
Tsp45I	GTSAC	2 cut(s)	15, 152
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	1 cut(s)	357
Tth111I	GACNNNGTC	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	104
XapI	RAATTY	1 cut(s)	143
XspI	CTAG	1 cut(s)	364
ZrmI	AGTACT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.