Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Reverse (-)

73799847 .. 73800516

Gene Structure 670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035943

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCGCAAAACCGCAGCCAAGCCCAAAACCGTGTCATCTGGCAGCCCATGGTACGGTGCAGACCATGTCAAGTACTTGGGTCCATTCTCCGGTGAGGCGCCATCTTACCTCACCGGAGAGTTTCCCGGTGATGGTTGGGACGCAGATCCCGAGACCTTTGCCAAAAACCGTGAGCTTGAGGTCATCCATTCCAGATGGGCAATGCTCGGCGCCTTGGGCTATGTTTTCCCTGAACTCCTAGCCCGCAACGGAGTCAAGTTCGGCGAAGCTGTTTGGTTCAAGGCCGGAGCCCAGATTTTTAGTGAGGGCTACAGAGTTGCCGGTGGGCCTCTTGGTGAGGTGGTAGACCCACTGCACCCCGGCGGGAGTTTCGACCAGTTAGACCTTGCAGAAGATCCAGAAGCTTTTGCTGAGCTAAAGGTAAAGGAGCTCAAGAATGGAAGATTAGCTATGTTTTCCATGTTCGGGTTTTTCGTACAAGCCATTGTTACCGGAAAGGGACCGATCGAGAACTTGGCTGACTCTGTCAACAACAATGCTTGGTCATATGCCACCAACTTTGTTCTCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

192

Amino Acids

20.73

Weight (kDa)

5.25

Isoelectric Point (pI)

18.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	34 - 162	1.6e-30	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AccB1I	GGYRCC	2 cut(s)	97, 209
AccI	GTMKAC	1 cut(s)	345
AciI	CCGC	3 cut(s)	12, 244, 363
AclWI	GGATC	2 cut(s)	140, 389
AcyI	GRCGYC	2 cut(s)	98, 210
AfaI	GTAC	3 cut(s)	53, 74, 477
AfiI	CCNNNNNNNGG	4 cut(s)	53, 89, 131, 465
AgsI	TTSAA	1 cut(s)	280
AluBI	AGCT	6 cut(s)	175, 269, 404, 415, 430, 449
AluI	AGCT	6 cut(s)	175, 269, 404, 415, 430, 449
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	2 cut(s)	140, 389
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	2 cut(s)	282, 326
ApeKI	GCWGC	2 cut(s)	14, 42
AspLEI	GCGC	3 cut(s)	6, 100, 212
AspS9I	GGNCC	3 cut(s)	80, 326, 500
AsuC2I	CCSGG	2 cut(s)	126, 360
AsuHPI	GGTGA	4 cut(s)	103, 104, 140, 347
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	2 cut(s)	80, 500
BanI	GGYRCC	2 cut(s)	97, 209
BanII	GRGCYC	2 cut(s)	292, 432
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	2 cut(s)	26, 54
BccI	CCATC	3 cut(s)	109, 125, 189
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BcnI	CCSGG	2 cut(s)	126, 360
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	310
BfoI	RGCGCY	2 cut(s)	101, 213
BisI	GCNGC	2 cut(s)	15, 43
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	2 cut(s)	16, 44
BmcAI	AGTACT	1 cut(s)	74
Bme1390I	CCNGG	2 cut(s)	126, 360
Bme18I	GGWCC	2 cut(s)	80, 500
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	3 cut(s)	80, 326, 500
BmiI	GGNNCC	5 cut(s)	81, 99, 211, 289, 501
BmrFI	CCNGG	2 cut(s)	126, 360
Bpu1102I	GCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	2 cut(s)	197, 416
BpuMI	CCSGG	2 cut(s)	126, 360
BsaHI	GRCGYC	2 cut(s)	98, 210
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	3 cut(s)	47, 213, 358
BsaWI	WCCGGW	3 cut(s)	89, 113, 491
Bsc4I	CCNNNNNNNGG	4 cut(s)	53, 89, 131, 465
Bse118I	RCCGGY	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	376
Bse3DI	GCAATG	1 cut(s)	207
BseDI	CCNNGG	3 cut(s)	47, 213, 358
BseGI	GGATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	4 cut(s)	53, 89, 131, 465
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	1 cut(s)	376
BseXI	GCAGC	2 cut(s)	26, 54
BsgI	GTGCAG	2 cut(s)	78, 338
Bsh1285I	CGRYCG	1 cut(s)	507
BshFI	GGCC	2 cut(s)	284, 328
BshNI	GGYRCC	2 cut(s)	97, 209
BsiEI	CGRYCG	1 cut(s)	507
BsiHKAI	GWGCWC	1 cut(s)	432
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	7 cut(s)	90, 114, 126, 285, 321, 360, 492
BslFI	GGGAC	2 cut(s)	152, 513
BslI	CCNNNNNNNGG	4 cut(s)	53, 89, 131, 465
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	2 cut(s)	152, 513
BsnI	GGCC	2 cut(s)	284, 328
Bso31I	GGTCTC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	292, 432
Bsp143I	GATC	3 cut(s)	145, 394, 504
Bsp1720I	GCTNAGC	1 cut(s)	411
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	3 cut(s)	12, 244, 363
BspANI	GGCC	2 cut(s)	284, 328
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	5 cut(s)	81, 99, 211, 289, 501
BspPI	GGATC	2 cut(s)	140, 389
BspT107I	GGYRCC	2 cut(s)	97, 209
BspTNI	GGTCTC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	376
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	3 cut(s)	47, 213, 358
BssMI	GATC	3 cut(s)	145, 394, 504
BssNI	GRCGYC	2 cut(s)	98, 210
BssT1I	CCWWGG	2 cut(s)	47, 213
Bst4CI	ACNGT	3 cut(s)	31, 56, 170
BstACI	GRCGYC	2 cut(s)	98, 210
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	1 cut(s)	411
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	183
BstH2I	RGCGCY	2 cut(s)	101, 213
BstHHI	GCGC	3 cut(s)	6, 100, 212
BstKTI	GATC	3 cut(s)	148, 397, 507
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	3 cut(s)	145, 394, 504
BstMCI	CGRYCG	1 cut(s)	507
BstMWI	GCNNNNNNNGC	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	124, 358
BstSFI	CTRYAG	1 cut(s)	310
BstV1I	GCAGC	2 cut(s)	26, 54
BstX2I	RGATCY	2 cut(s)	145, 394
BstYI	RGATCY	2 cut(s)	145, 394
BsuRI	GGCC	2 cut(s)	284, 328
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	183
BtsI	GCAGTG	1 cut(s)	350
BtsIMutI	CAGTG	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	244
CfoI	GCGC	3 cut(s)	6, 100, 212
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	3 cut(s)	80, 326, 500
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	3 cut(s)	52, 73, 476
CspCI	CAANNNNNGTGG	2 cut(s)	541, 576
CviAII	CATG	3 cut(s)	48, 65, 460
CviQI	GTAC	3 cut(s)	52, 73, 476
DdeI	CTNAG	1 cut(s)	411
DinI	GGCGCC	2 cut(s)	99, 211
DpnI	GATC	3 cut(s)	147, 396, 506
DpnII	GATC	3 cut(s)	145, 394, 504
Ecl136II	GAGCTC	1 cut(s)	430
Eco130I	CCWWGG	2 cut(s)	47, 213
Eco24I	GRGCYC	2 cut(s)	292, 432
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	2 cut(s)	80, 500
Eco53kI	GAGCTC	1 cut(s)	430
Eco88I	CYCGRG	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	430
EcoT14I	CCWWGG	2 cut(s)	47, 213
EcoT38I	GRGCYC	2 cut(s)	292, 432
EgeI	GGCGCC	2 cut(s)	99, 211
EheI	GGCGCC	2 cut(s)	99, 211
ErhI	CCWWGG	2 cut(s)	47, 213
FaeI	CATG	3 cut(s)	51, 68, 463
FaiI	YATR	7 cut(s)	49, 66, 222, 452, 461, 547, 549
FaqI	GGGAC	2 cut(s)	152, 513
FatI	CATG	3 cut(s)	47, 64, 459
FauI	CCCGC	2 cut(s)	251, 356
FauNDI	CATATG	1 cut(s)	547
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	2 cut(s)	15, 43
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	2 cut(s)	292, 432
Fsp4HI	GCNGC	2 cut(s)	15, 43
FspBI	CTAG	1 cut(s)	239
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	3 cut(s)	5, 99, 211
GluI	GCNGC	2 cut(s)	15, 43
HaeII	RGCGCY	2 cut(s)	101, 213
HaeIII	GGCC	2 cut(s)	284, 328
HapII	CCGG	7 cut(s)	90, 114, 126, 285, 321, 360, 492
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	3 cut(s)	6, 100, 212
Hin1I	GRCGYC	2 cut(s)	98, 210
Hin1II	CATG	3 cut(s)	51, 68, 463
Hin6I	GCGC	3 cut(s)	4, 98, 210
HinP1I	GCGC	3 cut(s)	4, 98, 210
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HindIII	AAGCTT	1 cut(s)	402
HinfI	GANTC	2 cut(s)	252, 521
HpaII	CCGG	7 cut(s)	90, 114, 126, 285, 321, 360, 492
HphI	GGTGA	4 cut(s)	103, 104, 140, 347
Hpy166II	GTNNAC	2 cut(s)	346, 529
Hpy188I	TCNGA	1 cut(s)	569
Hpy188III	TCNNGA	5 cut(s)	149, 192, 398, 433, 508
Hpy8I	GTNNAC	2 cut(s)	346, 529
HpyCH4III	ACNGT	3 cut(s)	31, 56, 170
HpyCH4V	TGCA	3 cut(s)	59, 355, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	216
HpyF3I	CTNAG	1 cut(s)	411
Hsp92I	GRCGYC	2 cut(s)	98, 210
Hsp92II	CATG	3 cut(s)	51, 68, 463
HspAI	GCGC	3 cut(s)	4, 98, 210
KasI	GGCGCC	2 cut(s)	97, 209
Kzo9I	GATC	3 cut(s)	145, 394, 504
LmnI	GCTCC	2 cut(s)	287, 427
Lsp1109I	GCAGC	2 cut(s)	26, 54
MaeI	CTAG	1 cut(s)	239
MaeIII	GTNAC	1 cut(s)	487
MalI	GATC	3 cut(s)	147, 396, 506
MboI	GATC	3 cut(s)	145, 394, 504
MboII	GAAGA	2 cut(s)	404, 453
MflI	RGATCY	2 cut(s)	145, 394
MhlI	GDGCHC	2 cut(s)	292, 432
Mly113I	GGCGCC	2 cut(s)	98, 210
MlyI	GAGTC	2 cut(s)	261, 515
MnlI	CCTC	6 cut(s)	88, 119, 172, 298, 331, 339
MspI	CCGG	7 cut(s)	90, 114, 126, 285, 321, 360, 492
MspR9I	CCNGG	2 cut(s)	126, 360
MwoI	GCNNNNNNNGC	1 cut(s)	216
NarI	GGCGCC	2 cut(s)	98, 210
NciI	CCSGG	2 cut(s)	126, 360
NcoI	CCATGG	1 cut(s)	47
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	3 cut(s)	145, 394, 504
NlaIII	CATG	3 cut(s)	51, 68, 463
NlaIV	GGNNCC	5 cut(s)	81, 99, 211, 289, 501
NmeAIII	GCCGAG	1 cut(s)	186
NsbI	TGCGCA	1 cut(s)	5
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 471
PflFI	GACNNNGTC	2 cut(s)	65, 524
PkrI	GCNGC	2 cut(s)	16, 44
Ple19I	CGATCG	1 cut(s)	507
PleI	GAGTC	2 cut(s)	260, 515
PluTI	GGCGCC	2 cut(s)	101, 213
PpsI	GAGTC	2 cut(s)	260, 515
Psp124BI	GAGCTC	1 cut(s)	432
PspN4I	GGNNCC	5 cut(s)	81, 99, 211, 289, 501
PspPI	GGNCC	3 cut(s)	80, 326, 500
PsuI	RGATCY	2 cut(s)	145, 394
PsyI	GACNNNGTC	2 cut(s)	65, 524
PvuI	CGATCG	1 cut(s)	507
RsaI	GTAC	3 cut(s)	53, 74, 477
RsaNI	GTAC	3 cut(s)	52, 73, 476
SacI	GAGCTC	1 cut(s)	432
SatI	GCNGC	2 cut(s)	15, 43
Sau3AI	GATC	3 cut(s)	145, 394, 504
Sau96I	GGNCC	3 cut(s)	80, 326, 500
ScaI	AGTACT	1 cut(s)	74
SchI	GAGTC	2 cut(s)	261, 515
ScrFI	CCNGG	2 cut(s)	126, 360
SduI	GDGCHC	2 cut(s)	292, 432
SfcI	CTRYAG	1 cut(s)	310
SfoI	GGCGCC	2 cut(s)	99, 211
SinI	GGWCC	2 cut(s)	80, 500
SmlI	CTYRAG	2 cut(s)	176, 431
SmoI	CTYRAG	2 cut(s)	176, 431
SsiI	CCGC	3 cut(s)	12, 244, 363
SspDI	GGCGCC	2 cut(s)	97, 209
SspMI	CTAG	1 cut(s)	239
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	2 cut(s)	124, 358
StyI	CCWWGG	2 cut(s)	47, 213
TaaI	ACNGT	3 cut(s)	31, 56, 170
TaqI	TCGA	2 cut(s)	372, 507
TaqII	GACCGA	1 cut(s)	517
TatI	WGTACW	1 cut(s)	72
TscAI	CASTG	1 cut(s)	357
TseI	GCWGC	2 cut(s)	14, 42
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	1 cut(s)	357
Tth111I	GACNNNGTC	2 cut(s)	65, 524
VpaK11BI	GGWCC	2 cut(s)	80, 500
XmiI	GTMKAC	1 cut(s)	345
XspI	CTAG	1 cut(s)	239
ZrmI	AGTACT	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.