Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Reverse (-)

19179155 .. 19179985

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G174600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCTTCTTCAACAATGGCTCTCTCCTCCCCTTCTCTTGCTGGCCAAGCTGTCAAGCTCGGTTCCTCTGTTTCTAACATTGTTGGTGAGGGCCGAATTACCATGCGCAAAACCGCATCCAAGTCCAAAAATGTATCATCTGGCAGCCCGTGGTATGGCCCGGACCGTGTCAAATACTTGGGCCCCTTCTCTGGCGAGGCCCCCTCTTACCTCACTGGAGAATTCCCTGGTGATTACGGTTGGGACACTGCTGGGCTCTCAGCTGACCCAGAGACCTTTGCCAAGAACCGTGAGCTTGAAGTTATCCATTCAAGATGGGCCATGCTTGGTGCTCTGGGCTGCGTTTTCCCTGAACTCTTGTCCCGTAACGGGGTCAAGTTCGGTGAGGCTGTATGGTTCAAGGCTGGCGCCCAGATATTCAGTGAGGGTGGGCTAGACTACTTGGGAAACCCAAGCTTAGTCCATGCCCAAAGCATTTTAGCAATTTGGGCCACACAAGTTATCTTGATGGGTGCAGTGGAAGGTTACAGAGTTGCAGGTGGGCCTCTCGGAGAGATCACTGACCCATTATATCCAGGTGGGAGCTTTGACCCATTAGGCCTTGCAGAGGATCCAGAGGCTTTCGCTGAGCTGAAGGTGAAGGAGCTGAAGAATGGAAGACTCGCCATGTTTTCCATGTTTGGTTTCTTTGTGCAGGCCATTGTTACAGGAAAGGGGCCAATTGAGAACTTGGCTGACCACTTAGCTGATCCTGTTAACAACAATGCTTGGTCATATGCCACAAACTTTGTTCCTGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

268

Amino Acids

28.33

Weight (kDa)

5.3

Isoelectric Point (pI)

26.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	527
Acc16I	TGCGCA	1 cut(s)	107
Acc36I	ACCTGC	1 cut(s)	527
AccB1I	GGYRCC	1 cut(s)	407
AciI	CCGC	1 cut(s)	114
AclWI	GGATC	3 cut(s)	605, 618, 743
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	221
AcuI	CTGAAG	2 cut(s)	653, 668
AcyI	GRCGYC	1 cut(s)	408
AfiI	CCNNNNNNNGG	5 cut(s)	155, 191, 369, 370, 607
AgsI	TTSAA	4 cut(s)	12, 299, 312, 400
AjnI	CCWGG	3 cut(s)	226, 574, 793
AluBI	AGCT	9 cut(s)	50, 58, 263, 295, 456, 585, 631, 646, 746
AluI	AGCT	9 cut(s)	50, 58, 263, 295, 456, 585, 631, 646, 746
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	3 cut(s)	605, 618, 743
ApaI	GGGCCC	1 cut(s)	185
ApeKI	GCWGC	2 cut(s)	144, 339
ApoI	RAATTY	1 cut(s)	221
AspLEI	GCGC	2 cut(s)	108, 410
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	4 cut(s)	98, 242, 395, 649
AvaII	GGWCC	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	45
BamHI	GGATCC	1 cut(s)	610
BanI	GGYRCC	1 cut(s)	407
BanII	GRGCYC	2 cut(s)	185, 258
BbsI	GAAGAC	1 cut(s)	664
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	2 cut(s)	156, 326
BccI	CCATC	2 cut(s)	309, 502
BciT130I	CCWGG	3 cut(s)	228, 576, 795
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	434
BfoI	RGCGCY	1 cut(s)	411
BfuAI	ACCTGC	1 cut(s)	527
BisI	GCNGC	2 cut(s)	145, 340
BlpI	GCTNAGC	1 cut(s)	627
BlsI	GCNGC	2 cut(s)	146, 341
Bme1390I	CCNGG	4 cut(s)	161, 228, 576, 795
Bme18I	GGWCC	1 cut(s)	163
BmiI	GGNNCC	7 cut(s)	64, 183, 184, 201, 409, 612, 717
BmrFI	CCNGG	4 cut(s)	161, 228, 576, 795
BmsI	GCATC	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	664
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
BpmI	CTGGAG	1 cut(s)	237
Bpu1102I	GCTNAGC	1 cut(s)	627
BpuMI	CCSGG	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	149, 226
Bsc4I	CCNNNNNNNGG	5 cut(s)	155, 191, 369, 370, 607
Bse1I	ACTGG	1 cut(s)	220
BseBI	CCWGG	3 cut(s)	228, 576, 795
BseDI	CCNNGG	2 cut(s)	149, 226
BseGI	GGATG	1 cut(s)	116
BseLI	CCNNNNNNNGG	5 cut(s)	155, 191, 369, 370, 607
BseMII	CTCAG	2 cut(s)	273, 618
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	16
BseSI	GKGCMC	1 cut(s)	185
BseXI	GCAGC	2 cut(s)	156, 326
BseYI	CCCAGC	1 cut(s)	251
BsgI	GTGCAG	2 cut(s)	534, 713
BshNI	GGYRCC	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	2 cut(s)	257, 346
BslI	CCNNNNNNNGG	5 cut(s)	155, 191, 369, 370, 607
BsmAI	GTCTC	1 cut(s)	266
BsmFI	GGGAC	2 cut(s)	257, 346
Bso31I	GGTCTC	1 cut(s)	266
Bsp120I	GGGCCC	1 cut(s)	181
Bsp1286I	GDGCHC	3 cut(s)	185, 258, 334
Bsp143I	GATC	3 cut(s)	555, 610, 748
Bsp1720I	GCTNAGC	1 cut(s)	627
BspACI	CCGC	1 cut(s)	114
BspCNI	CTCAG	2 cut(s)	272, 619
BspLI	GGNNCC	7 cut(s)	64, 183, 184, 201, 409, 612, 717
BspMI	ACCTGC	1 cut(s)	527
BspPI	GGATC	3 cut(s)	605, 618, 743
BspT107I	GGYRCC	1 cut(s)	407
BspTNI	GGTCTC	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	2 cut(s)	149, 226
BssMI	GATC	3 cut(s)	555, 610, 748
BssNI	GRCGYC	1 cut(s)	408
Bst2UI	CCWGG	3 cut(s)	228, 576, 795
Bst4CI	ACNGT	3 cut(s)	167, 239, 290
BstACI	GRCGYC	1 cut(s)	408
BstC8I	GCNNGC	3 cut(s)	43, 406, 696
BstDEI	CTNAG	4 cut(s)	259, 457, 627, 742
BstDSI	CCRYGG	1 cut(s)	149
BstENI	CCTNNNNNAGG	1 cut(s)	605
BstF5I	GGATG	1 cut(s)	116
BstH2I	RGCGCY	1 cut(s)	411
BstHHI	GCGC	2 cut(s)	108, 410
BstKTI	GATC	3 cut(s)	558, 613, 751
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	3 cut(s)	555, 610, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 488
BstNI	CCWGG	3 cut(s)	228, 576, 795
BstSCI	CCNGG	4 cut(s)	159, 226, 574, 793
BstSLI	GKGCMC	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	156, 326
BstV2I	GAAGAC	1 cut(s)	664
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
BtgI	CCRYGG	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	116
BtsI	GCAGTG	2 cut(s)	246, 522
BtsIMutI	CAGTG	5 cut(s)	213, 246, 427, 522, 558
BveI	ACCTGC	1 cut(s)	527
Cac8I	GCNNGC	3 cut(s)	43, 406, 696
CfoI	GCGC	2 cut(s)	108, 410
CpoI	CGGWCCG	1 cut(s)	163
CspCI	CAANNNNNGTGG	2 cut(s)	769, 804
CspI	CGGWCCG	1 cut(s)	163
CviAII	CATG	5 cut(s)	103, 322, 464, 667, 676
DdeI	CTNAG	4 cut(s)	259, 457, 627, 742
DinI	GGCGCC	1 cut(s)	409
DpnI	GATC	3 cut(s)	557, 612, 750
DpnII	GATC	3 cut(s)	555, 610, 748
EaeI	YGGCCR	1 cut(s)	43
Eco147I	AGGCCT	1 cut(s)	600
Eco24I	GRGCYC	2 cut(s)	185, 258
Eco31I	GGTCTC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	163
Eco57I	CTGAAG	2 cut(s)	653, 668
EcoNI	CCTNNNNNAGG	1 cut(s)	605
EcoO109I	RGGNCCY	2 cut(s)	182, 199
EcoRI	GAATTC	1 cut(s)	221
EcoRII	CCWGG	3 cut(s)	226, 574, 793
EcoT38I	GRGCYC	2 cut(s)	185, 258
EgeI	GGCGCC	1 cut(s)	409
EheI	GGCGCC	1 cut(s)	409
FaeI	CATG	5 cut(s)	106, 325, 467, 670, 679
FaqI	GGGAC	2 cut(s)	257, 346
FatI	CATG	5 cut(s)	102, 321, 463, 666, 675
FauNDI	CATATG	1 cut(s)	775
Fnu4HI	GCNGC	2 cut(s)	145, 340
FokI	GGATG	1 cut(s)	103
FriOI	GRGCYC	2 cut(s)	185, 258
Fsp4HI	GCNGC	2 cut(s)	145, 340
FspBI	CTAG	1 cut(s)	434
FspI	TGCGCA	1 cut(s)	107
GlaI	GCGC	2 cut(s)	107, 409
GluI	GCNGC	2 cut(s)	145, 340
GsaI	CCCAGC	1 cut(s)	255
GsuI	CTGGAG	1 cut(s)	237
HaeII	RGCGCY	1 cut(s)	411
HapII	CCGG	1 cut(s)	161
HhaI	GCGC	2 cut(s)	108, 410
Hin1I	GRCGYC	1 cut(s)	408
Hin1II	CATG	5 cut(s)	106, 325, 467, 670, 679
Hin6I	GCGC	2 cut(s)	106, 408
HinP1I	GCGC	2 cut(s)	106, 408
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HindIII	AAGCTT	1 cut(s)	454
HinfI	GANTC	1 cut(s)	660
HpaI	GTTAAC	1 cut(s)	757
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	4 cut(s)	98, 242, 395, 649
Hpy166II	GTNNAC	1 cut(s)	757
Hpy188I	TCNGA	1 cut(s)	551
Hpy188III	TCNNGA	3 cut(s)	312, 505, 614
Hpy8I	GTNNAC	1 cut(s)	757
HpyAV	CCTTC	5 cut(s)	42, 196, 515, 628, 634
HpyCH4III	ACNGT	3 cut(s)	167, 239, 290
HpyCH4V	TGCA	4 cut(s)	515, 536, 605, 694
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 488
HpyF3I	CTNAG	4 cut(s)	259, 457, 627, 742
Hsp92I	GRCGYC	1 cut(s)	408
Hsp92II	CATG	5 cut(s)	106, 325, 467, 670, 679
HspAI	GCGC	2 cut(s)	106, 408
KasI	GGCGCC	1 cut(s)	407
KspAI	GTTAAC	1 cut(s)	757
Kzo9I	GATC	3 cut(s)	555, 610, 748
LmnI	GCTCC	2 cut(s)	582, 643
Lsp1109I	GCAGC	2 cut(s)	156, 326
LweI	GCATC	1 cut(s)	125
MaeI	CTAG	1 cut(s)	434
MaeIII	GTNAC	3 cut(s)	365, 524, 703
MalI	GATC	3 cut(s)	557, 612, 750
MboI	GATC	3 cut(s)	555, 610, 748
MboII	GAAGA	2 cut(s)	661, 669
MfeI	CAATTG	1 cut(s)	720
MflI	RGATCY	1 cut(s)	610
MhlI	GDGCHC	3 cut(s)	185, 258, 334
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	4 cut(s)	96, 221, 483, 720
MluNI	TGGCCA	1 cut(s)	45
Mly113I	GGCGCC	1 cut(s)	408
MlyI	GAGTC	1 cut(s)	654
Mox20I	TGGCCA	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	1 cut(s)	756
Msp20I	TGGCCA	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	4 cut(s)	161, 228, 576, 795
MunI	CAATTG	1 cut(s)	720
MvaI	CCWGG	3 cut(s)	228, 576, 795
MwoI	GCNNNNNNNGC	2 cut(s)	47, 488
NarI	GGCGCC	1 cut(s)	408
NciI	CCSGG	1 cut(s)	161
NdeI	CATATG	1 cut(s)	775
NdeII	GATC	3 cut(s)	555, 610, 748
NlaIII	CATG	5 cut(s)	106, 325, 467, 670, 679
NlaIV	GGNNCC	7 cut(s)	64, 183, 184, 201, 409, 612, 717
NsbI	TGCGCA	1 cut(s)	107
PaqCI	CACCTGC	1 cut(s)	527
PceI	AGGCCT	1 cut(s)	600
PflFI	GACNNNGTC	1 cut(s)	167
PfoI	TCCNGGA	1 cut(s)	793
PkrI	GCNGC	2 cut(s)	146, 341
PleI	GAGTC	1 cut(s)	654
PluTI	GGCGCC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	654
Psp6I	CCWGG	3 cut(s)	226, 574, 793
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	3 cut(s)	226, 574, 793
PspN4I	GGNNCC	7 cut(s)	64, 183, 184, 201, 409, 612, 717
PspOMI	GGGCCC	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	610
PsyI	GACNNNGTC	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	263
Rsr2I	CGGWCCG	1 cut(s)	163
RsrII	CGGWCCG	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	756
SatI	GCNGC	2 cut(s)	145, 340
Sau3AI	GATC	3 cut(s)	555, 610, 748
SchI	GAGTC	1 cut(s)	654
ScrFI	CCNGG	4 cut(s)	161, 228, 576, 795
SduI	GDGCHC	3 cut(s)	185, 258, 334
SfaNI	GCATC	1 cut(s)	125
SfoI	GGCGCC	1 cut(s)	409
SinI	GGWCC	1 cut(s)	163
Sse9I	AATT	4 cut(s)	96, 221, 483, 720
SseBI	AGGCCT	1 cut(s)	600
SsiI	CCGC	1 cut(s)	114
SspDI	GGCGCC	1 cut(s)	407
SspMI	CTAG	1 cut(s)	434
StuI	AGGCCT	1 cut(s)	600
StyD4I	CCNGG	4 cut(s)	159, 226, 574, 793
TaaI	ACNGT	3 cut(s)	167, 239, 290
TasI	AATT	4 cut(s)	96, 221, 483, 720
Tru1I	TTAA	1 cut(s)	756
Tru9I	TTAA	1 cut(s)	756
TscAI	CASTG	5 cut(s)	220, 253, 427, 522, 565
TseI	GCWGC	2 cut(s)	144, 339
TspRI	CASTG	5 cut(s)	220, 253, 427, 522, 565
Tth111I	GACNNNGTC	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	163
XagI	CCTNNNNNAGG	1 cut(s)	605
XapI	RAATTY	1 cut(s)	221
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.