Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Reverse (-)

17962504 .. 17963304

Gene Structure 801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023090

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCATCCACGGCTCTCTCATCTCCATTCATAGGCAAAGCCATTATTCCTTTAAACACAGAGACAGGGCTTTTAGCTGTCCAAGGCAATGGTAGGGTTTCTATGAGGAAGACAGCAAAGAAGCCAGCTGCATCATCAGGCAGCCTCTGGTACGGCCCTGACCGTGTCAAGTACCTTGGACCATTCTCTGGTGAGGCTCCATCTTACCTAACCGGCGAGTTCCCTGGTGACTACGGGTGGGACACCGCAGGGCTATCAGCCGACCCAGAAACTTTTGCCAAGAACCGTGAACTCGAGGTTATTCACTCCAGATGGGCAATGCTTGGGGCTCTGGGCTGTGTTTTCCCTGAGCTTCTTTCCAGAAATGGAGTCAAGTTTGGTGAAGCAGTGTGGTTCAAAGCTGGAGCTCAGATCTTCAGCGAGGGTGGCCTGGACTACCTTGGAAACCCAAGCTTGGTTCATGCACAGAGCATCTTAGCAATATGGGCAACCCAGGTTCTTCTCATGGGAGCTGTTGAGGGTTACCGCATTGCTGGAGGGCCACTTGGAGAAATCACCGACCCATTGTACCCAGGAGGCAGCTTTGATCCTTTGGGGCTTGCAGAGGACCCAGAGGCATTTGCAGAGCTTAAGGTGAAAGAGCTTAAGAATGGAAGACTTGCCATGTTCTCCATGTTTGGCTTCTTTGTGCAGGCCATTGTAACCGGAAAGGGCCCTATTGAGAACCTTGCTGACCATCTGGCTGACCCTGTTAACAACAATGCCTGGTCATATGCCACCAACTTTGTACCTGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

267

Amino Acids

28.32

Weight (kDa)

5.3

Isoelectric Point (pI)

22.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	66 - 233	1.5e-50	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	188
AciI	CCGC	2 cut(s)	246, 526
AclWI	GGATC	1 cut(s)	581
AcuI	CTGAAG	1 cut(s)	400
AfaI	GTAC	4 cut(s)	152, 173, 569, 789
AfiI	CCNNNNNNNGG	3 cut(s)	32, 188, 454
AflII	CTTAAG	2 cut(s)	629, 644
AgsI	TTSAA	1 cut(s)	397
AjnI	CCWGG	6 cut(s)	223, 429, 492, 571, 764, 790
Alw21I	GWGCWC	1 cut(s)	409
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	581
AlwNI	CAGNNNCTG	1 cut(s)	147
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	5 cut(s)	154, 427, 539, 693, 712
ApaI	GGGCCC	1 cut(s)	716
ApeKI	GCWGC	3 cut(s)	128, 141, 579
AspS9I	GGNCC	6 cut(s)	155, 179, 539, 607, 712, 713
AsuHPI	GGTGA	5 cut(s)	203, 239, 392, 547, 646
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	2 cut(s)	179, 607
BaeGI	GKGCMC	1 cut(s)	716
BanII	GRGCYC	3 cut(s)	331, 409, 716
BbsI	GAAGAC	2 cut(s)	116, 661
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	3 cut(s)	115, 153, 591
BccI	CCATC	3 cut(s)	208, 306, 744
BceAI	ACGGC	2 cut(s)	27, 169
BciT130I	CCWGG	6 cut(s)	225, 431, 494, 573, 766, 792
BcoDI	GTCTC	1 cut(s)	56
BfrI	CTTAAG	2 cut(s)	629, 644
BglII	AGATCT	1 cut(s)	411
BisI	GCNGC	3 cut(s)	129, 142, 580
BlsI	GCNGC	3 cut(s)	130, 143, 581
Bme1390I	CCNGG	6 cut(s)	225, 431, 494, 573, 766, 792
Bme18I	GGWCC	2 cut(s)	179, 607
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	6 cut(s)	155, 179, 539, 607, 712, 713
BmiI	GGNNCC	3 cut(s)	198, 609, 714
BmrFI	CCNGG	6 cut(s)	225, 431, 494, 573, 766, 792
BmsI	GCATC	3 cut(s)	14, 140, 480
BpiI	GAAGAC	2 cut(s)	116, 661
BpmI	CTGGAG	3 cut(s)	292, 423, 555
Bpu10I	CCTNAGC	1 cut(s)	348
BsaJI	CCNNGG	7 cut(s)	9, 82, 175, 223, 439, 492, 571
BsaWI	WCCGGW	1 cut(s)	704
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 188, 454
Bse118I	RCCGGY	1 cut(s)	212
Bse3DI	GCAATG	3 cut(s)	94, 324, 528
BseBI	CCWGG	6 cut(s)	225, 431, 494, 573, 766, 792
BseDI	CCNNGG	7 cut(s)	9, 82, 175, 223, 439, 492, 571
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	3 cut(s)	32, 188, 454
BseMI	GCAATG	3 cut(s)	94, 324, 528
BseMII	CTCAG	2 cut(s)	339, 422
BseSI	GKGCMC	1 cut(s)	716
BseXI	GCAGC	3 cut(s)	115, 153, 591
BsgI	GTGCAG	1 cut(s)	710
BshFI	GGCC	5 cut(s)	156, 429, 541, 695, 714
BsiHKAI	GWGCWC	1 cut(s)	409
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	2 cut(s)	213, 705
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	3 cut(s)	32, 188, 454
BsmAI	GTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	5 cut(s)	156, 429, 541, 695, 714
BsoBI	CYCGRG	1 cut(s)	293
Bsp120I	GGGCCC	1 cut(s)	712
Bsp1286I	GDGCHC	3 cut(s)	331, 409, 716
Bsp143I	GATC	2 cut(s)	411, 586
BspACI	CCGC	2 cut(s)	246, 526
BspANI	GGCC	5 cut(s)	156, 429, 541, 695, 714
BspCNI	CTCAG	2 cut(s)	340, 421
BspLI	GGNNCC	3 cut(s)	198, 609, 714
BspPI	GGATC	1 cut(s)	581
BspTI	CTTAAG	2 cut(s)	629, 644
BsrDI	GCAATG	3 cut(s)	94, 324, 528
BsrFI	RCCGGY	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	7 cut(s)	9, 82, 175, 223, 439, 492, 571
BssMI	GATC	2 cut(s)	411, 586
BssT1I	CCWWGG	3 cut(s)	82, 175, 439
Bst2UI	CCWGG	6 cut(s)	225, 431, 494, 573, 766, 792
Bst4CI	ACNGT	2 cut(s)	164, 287
BstAFI	CTTAAG	2 cut(s)	629, 644
BstC8I	GCNNGC	3 cut(s)	126, 600, 693
BstDEI	CTNAG	3 cut(s)	348, 408, 475
BstDSI	CCRYGG	1 cut(s)	9
BstEII	GGTNACC	1 cut(s)	521
BstF5I	GGATG	1 cut(s)	5
BstKTI	GATC	2 cut(s)	414, 589
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	2 cut(s)	411, 586
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 426, 485
BstNI	CCWGG	6 cut(s)	225, 431, 494, 573, 766, 792
BstPI	GGTNACC	1 cut(s)	521
BstSCI	CCNGG	6 cut(s)	223, 429, 492, 571, 764, 790
BstSLI	GKGCMC	1 cut(s)	716
BstV1I	GCAGC	3 cut(s)	115, 153, 591
BstV2I	GAAGAC	2 cut(s)	116, 661
BstX2I	RGATCY	1 cut(s)	411
BstXI	CCANNNNNNTGG	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	411
BsuRI	GGCC	5 cut(s)	156, 429, 541, 695, 714
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	3 cut(s)	126, 600, 693
CaiI	CAGNNNCTG	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	6 cut(s)	155, 179, 539, 607, 712, 713
Csp6I	GTAC	4 cut(s)	151, 172, 568, 788
CspCI	CAANNNNNGTGG	2 cut(s)	766, 801
CviAII	CATG	4 cut(s)	461, 505, 664, 673
CviQI	GTAC	4 cut(s)	151, 172, 568, 788
DdeI	CTNAG	3 cut(s)	348, 408, 475
DpnI	GATC	2 cut(s)	413, 588
DpnII	GATC	2 cut(s)	411, 586
DraI	TTTAAA	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	407
Eco130I	CCWWGG	3 cut(s)	82, 175, 439
Eco24I	GRGCYC	3 cut(s)	331, 409, 716
Eco47I	GGWCC	2 cut(s)	179, 607
Eco53kI	GAGCTC	1 cut(s)	407
Eco57I	CTGAAG	1 cut(s)	400
Eco88I	CYCGRG	1 cut(s)	293
Eco91I	GGTNACC	1 cut(s)	521
EcoICRI	GAGCTC	1 cut(s)	407
EcoO109I	RGGNCCY	3 cut(s)	607, 712, 713
EcoO65I	GGTNACC	1 cut(s)	521
EcoRII	CCWGG	6 cut(s)	223, 429, 492, 571, 764, 790
EcoT14I	CCWWGG	3 cut(s)	82, 175, 439
EcoT38I	GRGCYC	3 cut(s)	331, 409, 716
ErhI	CCWWGG	3 cut(s)	82, 175, 439
FaeI	CATG	4 cut(s)	464, 508, 667, 676
FaiI	YATR	9 cut(s)	32, 104, 462, 484, 506, 665, 674, 772, 774
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	4 cut(s)	460, 504, 663, 672
FauNDI	CATATG	1 cut(s)	772
Fnu4HI	GCNGC	3 cut(s)	129, 142, 580
FriOI	GRGCYC	3 cut(s)	331, 409, 716
Fsp4HI	GCNGC	3 cut(s)	129, 142, 580
GluI	GCNGC	3 cut(s)	129, 142, 580
GsuI	CTGGAG	3 cut(s)	292, 423, 555
HaeIII	GGCC	5 cut(s)	156, 429, 541, 695, 714
HapII	CCGG	2 cut(s)	213, 705
Hin1II	CATG	4 cut(s)	464, 508, 667, 676
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HindIII	AAGCTT	1 cut(s)	451
HinfI	GANTC	1 cut(s)	369
HpaI	GTTAAC	1 cut(s)	754
HpaII	CCGG	2 cut(s)	213, 705
HphI	GGTGA	5 cut(s)	203, 239, 392, 547, 646
Hpy166II	GTNNAC	2 cut(s)	290, 754
Hpy188I	TCNGA	1 cut(s)	411
Hpy188III	TCNNGA	2 cut(s)	309, 360
Hpy8I	GTNNAC	2 cut(s)	290, 754
HpyCH4III	ACNGT	2 cut(s)	164, 287
HpyCH4V	TGCA	5 cut(s)	131, 464, 602, 623, 691
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 426, 485
HpyF3I	CTNAG	3 cut(s)	348, 408, 475
Hsp92II	CATG	4 cut(s)	464, 508, 667, 676
KspAI	GTTAAC	1 cut(s)	754
Kzo9I	GATC	2 cut(s)	411, 586
LmnI	GCTCC	3 cut(s)	202, 404, 509
Lsp1109I	GCAGC	3 cut(s)	115, 153, 591
LweI	GCATC	3 cut(s)	14, 140, 480
MaeIII	GTNAC	3 cut(s)	227, 521, 700
MalI	GATC	2 cut(s)	413, 588
MboI	GATC	2 cut(s)	411, 586
MboII	GAAGA	4 cut(s)	121, 406, 491, 666
MflI	RGATCY	1 cut(s)	411
MhlI	GDGCHC	3 cut(s)	331, 409, 716
MlyI	GAGTC	1 cut(s)	378
MseI	TTAA	4 cut(s)	53, 630, 645, 753
MspA1I	CMGCKG	1 cut(s)	128
MspCI	CTTAAG	2 cut(s)	629, 644
MspI	CCGG	2 cut(s)	213, 705
MspR9I	CCNGG	6 cut(s)	225, 431, 494, 573, 766, 792
MvaI	CCWGG	6 cut(s)	225, 431, 494, 573, 766, 792
MwoI	GCNNNNNNNGC	3 cut(s)	11, 426, 485
NdeI	CATATG	1 cut(s)	772
NdeII	GATC	2 cut(s)	411, 586
NlaIII	CATG	4 cut(s)	464, 508, 667, 676
NlaIV	GGNNCC	3 cut(s)	198, 609, 714
NmuCI	GTSAC	1 cut(s)	227
PaeR7I	CTCGAG	1 cut(s)	293
PflFI	GACNNNGTC	1 cut(s)	164
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	3 cut(s)	130, 143, 581
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PpuMI	RGGWCCY	1 cut(s)	607
Psp124BI	GAGCTC	1 cut(s)	409
Psp5II	RGGWCCY	1 cut(s)	607
Psp6I	CCWGG	6 cut(s)	223, 429, 492, 571, 764, 790
PspEI	GGTNACC	1 cut(s)	521
PspGI	CCWGG	6 cut(s)	223, 429, 492, 571, 764, 790
PspN4I	GGNNCC	3 cut(s)	198, 609, 714
PspOMI	GGGCCC	1 cut(s)	712
PspPI	GGNCC	6 cut(s)	155, 179, 539, 607, 712, 713
PspPPI	RGGWCCY	1 cut(s)	607
PspXI	VCTCGAGB	1 cut(s)	293
PstNI	CAGNNNCTG	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	411
PsyI	GACNNNGTC	1 cut(s)	164
PvuII	CAGCTG	1 cut(s)	128
RsaI	GTAC	4 cut(s)	152, 173, 569, 789
RsaNI	GTAC	4 cut(s)	151, 172, 568, 788
SacI	GAGCTC	1 cut(s)	409
SaqAI	TTAA	4 cut(s)	53, 630, 645, 753
SatI	GCNGC	3 cut(s)	129, 142, 580
Sau3AI	GATC	2 cut(s)	411, 586
Sau96I	GGNCC	6 cut(s)	155, 179, 539, 607, 712, 713
SchI	GAGTC	1 cut(s)	378
ScrFI	CCNGG	6 cut(s)	225, 431, 494, 573, 766, 792
SduI	GDGCHC	3 cut(s)	331, 409, 716
SfaNI	GCATC	3 cut(s)	14, 140, 480
Sfr274I	CTCGAG	1 cut(s)	293
SinI	GGWCC	2 cut(s)	179, 607
SlaI	CTCGAG	1 cut(s)	293
SmlI	CTYRAG	3 cut(s)	293, 629, 644
SmoI	CTYRAG	3 cut(s)	293, 629, 644
SsiI	CCGC	2 cut(s)	246, 526
SstI	GAGCTC	1 cut(s)	409
StyD4I	CCNGG	6 cut(s)	223, 429, 492, 571, 764, 790
StyI	CCWWGG	3 cut(s)	82, 175, 439
TaaI	ACNGT	2 cut(s)	164, 287
TaqI	TCGA	1 cut(s)	294
Tru1I	TTAA	4 cut(s)	53, 630, 645, 753
Tru9I	TTAA	4 cut(s)	53, 630, 645, 753
TscAI	CASTG	1 cut(s)	393
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	3 cut(s)	128, 141, 579
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	2 cut(s)	19, 449
TspRI	CASTG	1 cut(s)	393
Tth111I	GACNNNGTC	1 cut(s)	164
Van91I	CCANNNNNTGG	1 cut(s)	188
Vha464I	CTTAAG	2 cut(s)	629, 644
VpaK11BI	GGWCC	2 cut(s)	179, 607
XhoI	CTCGAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.