Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Reverse (-)

73912667 .. 73913412

Gene Structure 746 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34354

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCTTCTTCAGCAATGGCTCTCTCCTCCCCTTTTCTAGGTGGCCAAGCTGTGAAGCTCAGTTCCTCCATATCTAATCTCCTTGGTGAGGGCCGAGTCACCATGCGCAAAATCGCAGTCAAGTCCAAAACTGTATCATCTGGCAGCCCATGGTACGGTGCAGACCTGTTCAGTACTTGGTCCCATTCTCCGCATTTTGGCAATTTGGGCTACATACCAGGTAAGGTGGTAGACCCATTGTACCCTGGAAGGTGCTTTGACCCATTAGGACTTGCTGAAGATCTAGAGGCATTTGCAAAACTTAGGGTGAAGGAGCTAAAGAATGGGAGATTAGCCATGTTTTCTATGTTCGGGCTTTTCGTGCAAGCCATTGTCACCGGAAAGGGACCAATTGAAAACCTCGCTGACCACTTGGCTGACCCTGTTAACAACAATGCTTGGTCATACGCAACAAACTTTGTTCCCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

157

Amino Acids

16.81

Weight (kDa)

9.3

Isoelectric Point (pI)

20.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	70 - 124	3.7e-15	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	43
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	3 cut(s)	155, 175, 242
AfiI	CCNNNNNNNGG	4 cut(s)	38, 88, 155, 197
AgsI	TTSAA	1 cut(s)	395
AjnI	CCWGG	2 cut(s)	217, 244
AluBI	AGCT	3 cut(s)	50, 58, 316
AluI	AGCT	3 cut(s)	50, 58, 316
AoxI	GGCC	2 cut(s)	43, 91
ApeKI	GCWGC	1 cut(s)	144
ArsI	GACNNNNNNTTYG	2 cut(s)	102, 134
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	3 cut(s)	91, 180, 386
AsuC2I	CCSGG	1 cut(s)	465
AsuHPI	GGTGA	4 cut(s)	91, 98, 319, 367
AvaII	GGWCC	2 cut(s)	180, 386
BalI	TGGCCA	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	156
BciT130I	CCWGG	2 cut(s)	219, 246
BcnI	CCSGG	1 cut(s)	465
BfaI	CTAG	2 cut(s)	38, 284
BglII	AGATCT	1 cut(s)	280
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
BmcAI	AGTACT	1 cut(s)	175
Bme1390I	CCNGG	3 cut(s)	219, 246, 465
Bme18I	GGWCC	2 cut(s)	180, 386
BmgT120I	GGNCC	3 cut(s)	91, 180, 386
BmiI	GGNNCC	2 cut(s)	182, 387
BmrFI	CCNGG	3 cut(s)	219, 246, 465
BpuMI	CCSGG	1 cut(s)	465
BsaJI	CCNNGG	3 cut(s)	82, 149, 244
BsaWI	WCCGGW	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	4 cut(s)	38, 88, 155, 197
Bse3DI	GCAATG	1 cut(s)	21
BseBI	CCWGG	2 cut(s)	219, 246
BseDI	CCNNGG	3 cut(s)	82, 149, 244
BseLI	CCNNNNNNNGG	4 cut(s)	38, 88, 155, 197
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	16
BseXI	GCAGC	1 cut(s)	156
BsgI	GTGCAG	1 cut(s)	180
BshFI	GGCC	2 cut(s)	45, 93
BsiSI	CCGG	2 cut(s)	378, 465
BslFI	GGGAC	2 cut(s)	166, 399
BslI	CCNNNNNNNGG	4 cut(s)	38, 88, 155, 197
BsmFI	GGGAC	2 cut(s)	166, 399
BsnI	GGCC	2 cut(s)	45, 93
Bsp143I	GATC	1 cut(s)	280
Bsp19I	CCATGG	1 cut(s)	149
BspACI	CCGC	1 cut(s)	191
BspANI	GGCC	2 cut(s)	45, 93
BspCNI	CTCAG	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	182, 387
BsrDI	GCAATG	1 cut(s)	21
BssECI	CCNNGG	3 cut(s)	82, 149, 244
BssMI	GATC	1 cut(s)	280
BssT1I	CCWWGG	2 cut(s)	82, 149
Bst2UI	CCWGG	2 cut(s)	219, 246
Bst4CI	ACNGT	2 cut(s)	133, 158
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	2 cut(s)	59, 302
BstDSI	CCRYGG	1 cut(s)	149
BstENI	CCTNNNNNAGG	2 cut(s)	36, 86
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 207, 361
BstNI	CCWGG	2 cut(s)	219, 246
BstSCI	CCNGG	3 cut(s)	217, 244, 463
BstV1I	GCAGC	1 cut(s)	156
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	45, 93
BtgI	CCRYGG	1 cut(s)	149
Cac8I	GCNNGC	1 cut(s)	366
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	3 cut(s)	91, 180, 386
CsiI	ACCWGGT	1 cut(s)	217
Csp6I	GTAC	3 cut(s)	154, 174, 241
CviAII	CATG	3 cut(s)	103, 150, 337
CviQI	GTAC	3 cut(s)	154, 174, 241
DdeI	CTNAG	2 cut(s)	59, 302
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	43
Eco130I	CCWWGG	2 cut(s)	82, 149
Eco47I	GGWCC	2 cut(s)	180, 386
Eco57I	CTGAAG	1 cut(s)	297
EcoNI	CCTNNNNNAGG	2 cut(s)	36, 86
EcoRII	CCWGG	2 cut(s)	217, 244
EcoT14I	CCWWGG	2 cut(s)	82, 149
ErhI	CCWWGG	2 cut(s)	82, 149
FaeI	CATG	3 cut(s)	106, 153, 340
FaiI	YATR	7 cut(s)	71, 104, 151, 215, 338, 347, 445
FaqI	GGGAC	2 cut(s)	166, 399
FatI	CATG	3 cut(s)	102, 149, 336
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	145
Fsp4HI	GCNGC	1 cut(s)	145
FspBI	CTAG	2 cut(s)	38, 284
FspI	TGCGCA	1 cut(s)	107
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	1 cut(s)	145
HaeIII	GGCC	2 cut(s)	45, 93
HapII	CCGG	2 cut(s)	378, 465
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	3 cut(s)	106, 153, 340
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	1 cut(s)	96
HpaI	GTTAAC	1 cut(s)	427
HpaII	CCGG	2 cut(s)	378, 465
HphI	GGTGA	4 cut(s)	91, 98, 319, 367
Hpy166II	GTNNAC	2 cut(s)	232, 427
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	2 cut(s)	232, 427
HpyAV	CCTTC	2 cut(s)	243, 304
HpyCH4III	ACNGT	2 cut(s)	133, 158
HpyCH4V	TGCA	3 cut(s)	161, 296, 364
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 207, 361
HpyF3I	CTNAG	2 cut(s)	59, 302
Hsp92II	CATG	3 cut(s)	106, 153, 340
HspAI	GCGC	1 cut(s)	106
KspAI	GTTAAC	1 cut(s)	427
Kzo9I	GATC	1 cut(s)	280
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	8 cut(s)	126, 179, 204, 231, 231, 258, 391, 435
Lsp1109I	GCAGC	1 cut(s)	156
MabI	ACCWGGT	1 cut(s)	217
MaeI	CTAG	2 cut(s)	38, 284
MaeIII	GTNAC	2 cut(s)	97, 373
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	1 cut(s)	290
MfeI	CAATTG	1 cut(s)	390
MflI	RGATCY	1 cut(s)	280
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	2 cut(s)	202, 390
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	105
MnlI	CCTC	5 cut(s)	37, 76, 82, 280, 410
Mox20I	TGGCCA	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	1 cut(s)	426
Msp20I	TGGCCA	1 cut(s)	45
MspI	CCGG	2 cut(s)	378, 465
MspR9I	CCNGG	3 cut(s)	219, 246, 465
MunI	CAATTG	1 cut(s)	390
MvaI	CCWGG	2 cut(s)	219, 246
MwoI	GCNNNNNNNGC	3 cut(s)	11, 207, 361
NciI	CCSGG	1 cut(s)	465
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	3 cut(s)	106, 153, 340
NlaIV	GGNNCC	2 cut(s)	182, 387
NmeAIII	GCCGAG	1 cut(s)	119
NmuCI	GTSAC	2 cut(s)	97, 373
NsbI	TGCGCA	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PfoI	TCCNGGA	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	146
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
Psp6I	CCWGG	2 cut(s)	217, 244
PspGI	CCWGG	2 cut(s)	217, 244
PspN4I	GGNNCC	2 cut(s)	182, 387
PspPI	GGNCC	3 cut(s)	91, 180, 386
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	3 cut(s)	155, 175, 242
RsaNI	GTAC	3 cut(s)	154, 174, 241
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	1 cut(s)	280
Sau96I	GGNCC	3 cut(s)	91, 180, 386
ScaI	AGTACT	1 cut(s)	175
SchI	GAGTC	1 cut(s)	105
ScrFI	CCNGG	3 cut(s)	219, 246, 465
SetI	ASST	9 cut(s)	43, 52, 60, 168, 223, 228, 254, 318, 402
SexAI	ACCWGGT	1 cut(s)	217
SinI	GGWCC	2 cut(s)	180, 386
Sse9I	AATT	2 cut(s)	202, 390
SsiI	CCGC	1 cut(s)	191
SspMI	CTAG	2 cut(s)	38, 284
StyD4I	CCNGG	3 cut(s)	217, 244, 463
StyI	CCWWGG	2 cut(s)	82, 149
TaaI	ACNGT	2 cut(s)	133, 158
TasI	AATT	2 cut(s)	202, 390
TatI	WGTACW	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TseFI	GTSAC	2 cut(s)	97, 373
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	2 cut(s)	97, 373
VpaK11BI	GGWCC	2 cut(s)	180, 386
XagI	CCTNNNNNAGG	2 cut(s)	36, 86
XbaI	TCTAGA	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	2 cut(s)	38, 284
ZrmI	AGTACT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.