MD17G1137800.v1.1

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
12344937 .. 12345638
702 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1137800.v1.1.491

Sequence Viewer

Length: 702 bp
ATGCGCAAAACTGCAGCCAAGTCCAAAAATGTATCATCCGGCAGCCCATGGTACGGTCCAGACCCTGTCAAGTACTTGGGTCCTTTCTCTGGTGAGTCCCCATCTTACCTCACAGGAGAATTCCCTGGTGATTACGGTTGGGACACTGCCGGACTCTCTGCAGACCCTGAGACATTTGCTAAGAACCGTGAGCTTGAAGTCATCCATTCTAGATGGGCAATGCTCGGCGCTCTGGGCTGCATTTTCCCAGAACTCCTATCTCGCAACGGAGTCAAGTTCGGTGAGGCTGTTTGGTTCAAGGCGGGAGCCCAAATTTTCAGCGAAGGCGGGCTAGACTACCTGGGGAATCCAAGCTTGGTCCATGCTCAAAGCATTTTGGCAATTTGGGCCACACAAGTTATCTTGATGGGTGCAGTGGAGGGATACAGAATTGCCGGTGGACCTCTCGGTGAGGTGACAGACCCTTTGTACCCCGGCGGGAGCTTTGATCCATTAGGGCTTGCCGAAGATCCAGAGACTTTTGCTGAACTTAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCCATGTTCTCCATGTTCGGATTTTTTGTGCAAGCCATTGTCACTGGAAAGGGACCAATTGAGAATTTGGCCAACCACTTGGCTGACCCCGTTAACAACAATGCTTGGTCGTATGCCACGAACTTTGTTCCCGGAAAGTGA

Protein Analysis

234

Amino Acids

25.03

Weight (kDa)

5.12

Isoelectric Point (pI)

25.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 34 - 200 4.2e-51 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis pycom09g04690
rosa_chinensis RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AciI CCGC 3 cut(s) 302, 327, 477
AclWI GGATC 2 cut(s) 482, 503
AcoI YGGCCR 2 cut(s) 561, 630
AcsI RAATTY 3 cut(s) 119, 312, 625
AfaI GTAC 3 cut(s) 53, 74, 470
AfiI CCNNNNNNNGG 2 cut(s) 53, 89
AflII CTTAAG 1 cut(s) 530
AgsI TTSAA 2 cut(s) 197, 298
AjnI CCWGG 2 cut(s) 124, 339
AjuI GAANNNNNNNTTGG 4 cut(s) 338, 370, 542, 574
AluBI AGCT 4 cut(s) 193, 354, 483, 544
AluI AGCT 4 cut(s) 193, 354, 483, 544
Alw21I GWGCWC 1 cut(s) 546
Alw26I GTCTC 2 cut(s) 164, 509
AlwI GGATC 2 cut(s) 482, 503
AlwNI CAGNNNCTG 2 cut(s) 65, 167
AoxI GGCC 3 cut(s) 387, 561, 630
ApeKI GCWGC 3 cut(s) 14, 42, 237
ApoI RAATTY 3 cut(s) 119, 312, 625
ArsI GACNNNNNNTTYG 2 cut(s) 448, 480
AspLEI GCGC 2 cut(s) 6, 230
AspS9I GGNCC 6 cut(s) 56, 80, 358, 387, 440, 614
AsuC2I CCSGG 2 cut(s) 474, 693
AsuHPI GGTGA 6 cut(s) 104, 140, 293, 461, 466, 547
AvaII GGWCC 5 cut(s) 56, 80, 358, 440, 614
BalI TGGCCA 2 cut(s) 563, 632
BanII GRGCYC 2 cut(s) 310, 546
Bbv12I GWGCWC 1 cut(s) 546
BbvI GCAGC 3 cut(s) 26, 54, 224
BccI CCATC 3 cut(s) 109, 207, 400
BciT130I CCWGG 2 cut(s) 126, 341
BciVI GTATCC 1 cut(s) 416
BcnI CCSGG 2 cut(s) 474, 693
BcoDI GTCTC 2 cut(s) 164, 509
BfaI CTAG 2 cut(s) 210, 332
BfmI CTRYAG 2 cut(s) 12, 159
BfoI RGCGCY 1 cut(s) 231
BfrI CTTAAG 1 cut(s) 530
BfuI GTATCC 1 cut(s) 416
BisI GCNGC 3 cut(s) 15, 43, 238
BlsI GCNGC 3 cut(s) 16, 44, 239
BmcAI AGTACT 1 cut(s) 74
Bme1390I CCNGG 4 cut(s) 126, 341, 474, 693
Bme18I GGWCC 5 cut(s) 56, 80, 358, 440, 614
BmgT120I GGNCC 6 cut(s) 56, 80, 358, 387, 440, 614
BmiI GGNNCC 3 cut(s) 81, 307, 615
BmrFI CCNGG 4 cut(s) 126, 341, 474, 693
BpuEI CTTGAG 1 cut(s) 530
BpuMI CCSGG 2 cut(s) 474, 693
BsaJI CCNNGG 4 cut(s) 47, 124, 340, 472
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 89
Bse118I RCCGGY 1 cut(s) 434
Bse1I ACTGG 1 cut(s) 610
Bse3DI GCAATG 1 cut(s) 225
BseBI CCWGG 2 cut(s) 126, 341
BseDI CCNNGG 4 cut(s) 47, 124, 340, 472
BseGI GGATG 2 cut(s) 35, 201
BseLI CCNNNNNNNGG 2 cut(s) 53, 89
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 610
BseXI GCAGC 3 cut(s) 26, 54, 224
BsgI GTGCAG 1 cut(s) 432
BshFI GGCC 3 cut(s) 389, 563, 632
BsiHKAI GWGCWC 1 cut(s) 546
BsiSI CCGG 5 cut(s) 39, 150, 435, 474, 693
BslFI GGGAC 3 cut(s) 82, 155, 627
BslI CCNNNNNNNGG 2 cut(s) 53, 89
BsmAI GTCTC 2 cut(s) 164, 509
BsmFI GGGAC 3 cut(s) 82, 155, 627
BsnI GGCC 3 cut(s) 389, 563, 632
Bsp1286I GDGCHC 2 cut(s) 310, 546
Bsp143I GATC 2 cut(s) 487, 508
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 3 cut(s) 302, 327, 477
BspANI GGCC 3 cut(s) 389, 563, 632
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 3 cut(s) 81, 307, 615
BspMAI CTGCAG 2 cut(s) 16, 163
BspPI GGATC 2 cut(s) 482, 503
BspTI CTTAAG 1 cut(s) 530
BsrDI GCAATG 1 cut(s) 225
BsrFI RCCGGY 1 cut(s) 434
BsrI ACTGG 1 cut(s) 610
BssAI RCCGGY 1 cut(s) 434
BssECI CCNNGG 4 cut(s) 47, 124, 340, 472
BssMI GATC 2 cut(s) 487, 508
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 126, 341
Bst4CI ACNGT 3 cut(s) 56, 137, 188
BstAFI CTTAAG 1 cut(s) 530
BstC8I GCNNGC 3 cut(s) 329, 501, 594
BstDEI CTNAG 2 cut(s) 168, 180
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 2 cut(s) 35, 201
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 2 cut(s) 6, 230
BstKTI GATC 2 cut(s) 490, 511
BstMAI GTCTC 2 cut(s) 164, 509
BstMBI GATC 2 cut(s) 487, 508
BstMWI GCNNNNNNNGC 2 cut(s) 234, 386
BstNI CCWGG 2 cut(s) 126, 341
BstSCI CCNGG 4 cut(s) 124, 339, 472, 691
BstSFI CTRYAG 2 cut(s) 12, 159
BstV1I GCAGC 3 cut(s) 26, 54, 224
BstX2I RGATCY 1 cut(s) 508
BstXI CCANNNNNNTGG 1 cut(s) 640
BstYI RGATCY 1 cut(s) 508
BsuI GTATCC 1 cut(s) 416
BsuRI GGCC 3 cut(s) 389, 563, 632
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 2 cut(s) 35, 201
BtsI GCAGTG 2 cut(s) 144, 420
BtsIMutI CAGTG 3 cut(s) 144, 420, 603
Cac8I GCNNGC 3 cut(s) 329, 501, 594
CaiI CAGNNNCTG 2 cut(s) 65, 167
CfoI GCGC 2 cut(s) 6, 230
Cfr10I RCCGGY 1 cut(s) 434
Cfr13I GGNCC 6 cut(s) 56, 80, 358, 387, 440, 614
Csp6I GTAC 3 cut(s) 52, 73, 469
CspCI CAANNNNNGTGG 2 cut(s) 667, 702
CviAII CATG 4 cut(s) 48, 362, 565, 574
CviQI GTAC 3 cut(s) 52, 73, 469
DdeI CTNAG 2 cut(s) 168, 180
DpnI GATC 2 cut(s) 489, 510
DpnII GATC 2 cut(s) 487, 508
EaeI YGGCCR 2 cut(s) 561, 630
Ecl136II GAGCTC 1 cut(s) 544
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 2 cut(s) 310, 546
Eco47I GGWCC 5 cut(s) 56, 80, 358, 440, 614
Eco53kI GAGCTC 1 cut(s) 544
EcoICRI GAGCTC 1 cut(s) 544
EcoO109I RGGNCCY 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 119
EcoRII CCWGG 2 cut(s) 124, 339
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 2 cut(s) 310, 546
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 4 cut(s) 51, 365, 568, 577
FaiI YATR 5 cut(s) 49, 363, 566, 575, 675
FaqI GGGAC 3 cut(s) 82, 155, 627
FatI CATG 4 cut(s) 47, 361, 564, 573
FauI CCCGC 3 cut(s) 295, 320, 470
Fnu4HI GCNGC 3 cut(s) 15, 43, 238
FokI GGATG 2 cut(s) 22, 188
FriOI GRGCYC 2 cut(s) 310, 546
Fsp4HI GCNGC 3 cut(s) 15, 43, 238
FspBI CTAG 2 cut(s) 210, 332
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 2 cut(s) 5, 229
GluI GCNGC 3 cut(s) 15, 43, 238
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 3 cut(s) 389, 563, 632
HapII CCGG 5 cut(s) 39, 150, 435, 474, 693
HhaI GCGC 2 cut(s) 6, 230
Hin1II CATG 4 cut(s) 51, 365, 568, 577
Hin6I GCGC 2 cut(s) 4, 228
HinP1I GCGC 2 cut(s) 4, 228
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HindIII AAGCTT 1 cut(s) 352
HinfI GANTC 4 cut(s) 95, 153, 270, 346
HpaI GTTAAC 1 cut(s) 655
HpaII CCGG 5 cut(s) 39, 150, 435, 474, 693
HphI GGTGA 6 cut(s) 104, 140, 293, 461, 466, 547
Hpy166II GTNNAC 2 cut(s) 440, 655
Hpy188I TCNGA 1 cut(s) 581
Hpy188III TCNNGA 5 cut(s) 59, 210, 403, 512, 547
Hpy8I GTNNAC 2 cut(s) 440, 655
HpyAV CCTTC 2 cut(s) 317, 532
HpyCH4III ACNGT 3 cut(s) 56, 137, 188
HpyCH4V TGCA 5 cut(s) 14, 161, 240, 413, 592
HpyF10VI GCNNNNNNNGC 2 cut(s) 234, 386
HpyF3I CTNAG 2 cut(s) 168, 180
Hsp92II CATG 4 cut(s) 51, 365, 568, 577
HspAI GCGC 2 cut(s) 4, 228
KspAI GTTAAC 1 cut(s) 655
Kzo9I GATC 2 cut(s) 487, 508
LmnI GCTCC 3 cut(s) 305, 480, 541
Lsp1109I GCAGC 3 cut(s) 26, 54, 224
MaeI CTAG 2 cut(s) 210, 332
MaeIII GTNAC 2 cut(s) 454, 601
MalI GATC 2 cut(s) 489, 510
MboI GATC 2 cut(s) 487, 508
MboII GAAGA 2 cut(s) 518, 567
MfeI CAATTG 1 cut(s) 618
MflI RGATCY 1 cut(s) 508
MhlI GDGCHC 2 cut(s) 310, 546
MlsI TGGCCA 2 cut(s) 563, 632
MluCI AATT 6 cut(s) 119, 312, 381, 429, 618, 625
MluNI TGGCCA 2 cut(s) 563, 632
MlyI GAGTC 3 cut(s) 104, 147, 279
MnlI CCTC 5 cut(s) 119, 277, 412, 445, 453
Mox20I TGGCCA 2 cut(s) 563, 632
MscI TGGCCA 2 cut(s) 563, 632
MseI TTAA 2 cut(s) 531, 654
Msp20I TGGCCA 2 cut(s) 563, 632
MspCI CTTAAG 1 cut(s) 530
MspI CCGG 5 cut(s) 39, 150, 435, 474, 693
MspR9I CCNGG 4 cut(s) 126, 341, 474, 693
MunI CAATTG 1 cut(s) 618
MvaI CCWGG 2 cut(s) 126, 341
MwoI GCNNNNNNNGC 2 cut(s) 234, 386
NciI CCSGG 2 cut(s) 474, 693
NcoI CCATGG 1 cut(s) 47
NdeII GATC 2 cut(s) 487, 508
NlaIII CATG 4 cut(s) 51, 365, 568, 577
NlaIV GGNNCC 3 cut(s) 81, 307, 615
NmeAIII GCCGAG 1 cut(s) 204
NmuCI GTSAC 2 cut(s) 454, 601
NsbI TGCGCA 1 cut(s) 5
PcsI WCGNNNNNNNCGW 1 cut(s) 677
PfeI GAWTC 1 cut(s) 346
PflFI GACNNNGTC 1 cut(s) 65
PfoI TCCNGGA 1 cut(s) 691
PkrI GCNGC 3 cut(s) 16, 44, 239
PleI GAGTC 3 cut(s) 103, 147, 278
PpsI GAGTC 3 cut(s) 103, 147, 278
PpuMI RGGWCCY 1 cut(s) 80
Psp124BI GAGCTC 1 cut(s) 546
Psp5II RGGWCCY 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 124, 339
PspGI CCWGG 2 cut(s) 124, 339
PspN4I GGNNCC 3 cut(s) 81, 307, 615
PspPI GGNCC 6 cut(s) 56, 80, 358, 387, 440, 614
PspPPI RGGWCCY 1 cut(s) 80
PstI CTGCAG 2 cut(s) 16, 163
PstNI CAGNNNCTG 2 cut(s) 65, 167
PsuI RGATCY 1 cut(s) 508
PsyI GACNNNGTC 1 cut(s) 65
RsaI GTAC 3 cut(s) 53, 74, 470
RsaNI GTAC 3 cut(s) 52, 73, 469
SacI GAGCTC 1 cut(s) 546
SaqAI TTAA 2 cut(s) 531, 654
SatI GCNGC 3 cut(s) 15, 43, 238
Sau3AI GATC 2 cut(s) 487, 508
Sau96I GGNCC 6 cut(s) 56, 80, 358, 387, 440, 614
ScaI AGTACT 1 cut(s) 74
SchI GAGTC 3 cut(s) 104, 147, 279
ScrFI CCNGG 4 cut(s) 126, 341, 474, 693
SduI GDGCHC 2 cut(s) 310, 546
SetI ASST 9 cut(s) 111, 195, 342, 356, 445, 456, 485, 537, 546
SfcI CTRYAG 2 cut(s) 12, 159
SinI GGWCC 5 cut(s) 56, 80, 358, 440, 614
SmlI CTYRAG 2 cut(s) 530, 545
SmoI CTYRAG 2 cut(s) 530, 545
Sse9I AATT 6 cut(s) 119, 312, 381, 429, 618, 625
SsiI CCGC 3 cut(s) 302, 327, 477
SspMI CTAG 2 cut(s) 210, 332
SstI GAGCTC 1 cut(s) 546
StyD4I CCNGG 4 cut(s) 124, 339, 472, 691
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 3 cut(s) 56, 137, 188
TasI AATT 6 cut(s) 119, 312, 381, 429, 618, 625
TatI WGTACW 1 cut(s) 72
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 2 cut(s) 531, 654
Tru9I TTAA 2 cut(s) 531, 654
TscAI CASTG 3 cut(s) 151, 420, 610
TseFI GTSAC 2 cut(s) 454, 601
TseI GCWGC 3 cut(s) 14, 42, 237
Tsp45I GTSAC 2 cut(s) 454, 601
TspGWI ACGGA 2 cut(s) 282, 567
TspRI CASTG 3 cut(s) 151, 420, 610
Tth111I GACNNNGTC 1 cut(s) 65
Vha464I CTTAAG 1 cut(s) 530
VpaK11BI GGWCC 5 cut(s) 56, 80, 358, 440, 614
XapI RAATTY 3 cut(s) 119, 312, 625
XbaI TCTAGA 1 cut(s) 209
XspI CTAG 2 cut(s) 210, 332
ZrmI AGTACT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.