Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Reverse (-)

69272941 .. 69273609

Gene Structure 669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52087

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCTAGGCGCCCTAGGCTGTGTTTTCCCCGAACTCTTGGCTCGTAATGGGGTCAAATTCGGCGAAGCTGTTTGGTTCAAGGCTGGAGCTCAAATCTTCAGTGAGGGTGGATTAGACTACTTGGGAAACCCGAGCTTGGTCCATGCCCAAAGCATTCTGGCAATTTGGGCAACACAGGTTATTTTGATGGGTGCGGTAGAAGGCTACAGAATTGCCGGTGGGCCGCTCGGTGAGGTTGTAGACCCTTTGTACCCCGGCGGGAGCTTTGACCCATTAGGGCTTGCAGACGATCCCGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGCTCAAGAATGGAAGACTGGCCATGTTCTCGATGTTCGGGTTTTTTGTGCAAGCTATTGTTACAGGAAAGGGACCGATTGAGAACCTAGCTGACCACTTGGCTGACCCTGTTAACAACAATGCTTGGTCATATGCCACAAACTTTGTACCCGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

160

Amino Acids

16.97

Weight (kDa)

4.77

Isoelectric Point (pI)

12.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	1 - 127	2.5e-29	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	8
AccBSI	CCGCTC	1 cut(s)	226
AccI	GTMKAC	1 cut(s)	240
AciI	CCGC	3 cut(s)	194, 224, 258
AclWI	GGATC	1 cut(s)	284
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	56
AcuI	CTGAAG	1 cut(s)	82
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	2 cut(s)	251, 471
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	79
AluBI	AGCT	8 cut(s)	68, 89, 135, 264, 310, 325, 377, 413
AluI	AGCT	8 cut(s)	68, 89, 135, 264, 310, 325, 377, 413
Alw21I	GWGCWC	3 cut(s)	91, 312, 327
AlwI	GGATC	1 cut(s)	284
Ama87I	CYCGRG	3 cut(s)	130, 293, 473
AoxI	GGCC	2 cut(s)	221, 342
ApoI	RAATTY	1 cut(s)	56
AspA2I	CCTAGG	1 cut(s)	13
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	3 cut(s)	139, 221, 395
AsuC2I	CCSGG	3 cut(s)	255, 474, 475
AsuHPI	GGTGA	2 cut(s)	242, 328
AvaI	CYCGRG	3 cut(s)	130, 293, 473
AvaII	GGWCC	2 cut(s)	139, 395
AvrII	CCTAGG	1 cut(s)	13
BalI	TGGCCA	1 cut(s)	344
BanI	GGYRCC	1 cut(s)	8
BanII	GRGCYC	3 cut(s)	91, 312, 327
BbsI	GAAGAC	1 cut(s)	343
Bbv12I	GWGCWC	3 cut(s)	91, 312, 327
BccI	CCATC	1 cut(s)	181
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BcnI	CCSGG	3 cut(s)	255, 474, 475
BfaI	CTAG	3 cut(s)	5, 14, 410
BfmI	CTRYAG	1 cut(s)	205
BfoI	RGCGCY	1 cut(s)	12
BisI	GCNGC	1 cut(s)	224
BlnI	CCTAGG	1 cut(s)	13
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	225
Bme1390I	CCNGG	3 cut(s)	255, 474, 475
Bme18I	GGWCC	2 cut(s)	139, 395
BmeT110I	CYCGRG	3 cut(s)	130, 293, 473
BmgT120I	GGNCC	3 cut(s)	139, 221, 395
BmiI	GGNNCC	2 cut(s)	10, 396
BmrFI	CCNGG	3 cut(s)	255, 474, 475
BpiI	GAAGAC	1 cut(s)	343
BpmI	CTGGAG	1 cut(s)	105
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	2 cut(s)	296, 311
BpuMI	CCSGG	3 cut(s)	255, 474, 475
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	4 cut(s)	13, 253, 294, 473
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	345
BseDI	CCNNGG	4 cut(s)	13, 253, 294, 473
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	345
BshFI	GGCC	2 cut(s)	223, 344
BshNI	GGYRCC	1 cut(s)	8
BsiHKAI	GWGCWC	3 cut(s)	91, 312, 327
BsiHKCI	CYCGRG	3 cut(s)	130, 293, 473
BsiSI	CCGG	3 cut(s)	216, 255, 474
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	408
BsmI	GAATGC	1 cut(s)	153
BsnI	GGCC	2 cut(s)	223, 344
BsoBI	CYCGRG	3 cut(s)	130, 293, 473
Bsp1286I	GDGCHC	3 cut(s)	91, 312, 327
Bsp143I	GATC	1 cut(s)	289
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	3 cut(s)	194, 224, 258
BspANI	GGCC	2 cut(s)	223, 344
BspCNI	CTCAG	1 cut(s)	298
BspLI	GGNNCC	2 cut(s)	10, 396
BspPI	GGATC	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	8
BsrBI	CCGCTC	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	345
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	4 cut(s)	13, 253, 294, 473
BssMI	GATC	1 cut(s)	289
BssNI	GRCGYC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	13
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	282, 375
BstDEI	CTNAG	1 cut(s)	306
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 167
BstSCI	CCNGG	3 cut(s)	253, 472, 473
BstSFI	CTRYAG	1 cut(s)	205
BstV2I	GAAGAC	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	223, 344
BtsIMutI	CAGTG	1 cut(s)	106
Cac8I	GCNNGC	2 cut(s)	282, 375
CfoI	GCGC	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	3 cut(s)	139, 221, 395
Cfr9I	CCCGGG	1 cut(s)	473
Csp6I	GTAC	2 cut(s)	250, 470
CspCI	CAANNNNNGTGG	2 cut(s)	448, 483
CviAII	CATG	2 cut(s)	143, 346
CviQI	GTAC	2 cut(s)	250, 470
DdeI	CTNAG	1 cut(s)	306
DinI	GGCGCC	1 cut(s)	10
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
EaeI	YGGCCR	1 cut(s)	342
Ecl136II	GAGCTC	3 cut(s)	89, 310, 325
Eco130I	CCWWGG	1 cut(s)	13
Eco24I	GRGCYC	3 cut(s)	91, 312, 327
Eco47I	GGWCC	2 cut(s)	139, 395
Eco53kI	GAGCTC	3 cut(s)	89, 310, 325
Eco57I	CTGAAG	1 cut(s)	82
Eco88I	CYCGRG	3 cut(s)	130, 293, 473
EcoICRI	GAGCTC	3 cut(s)	89, 310, 325
EcoT14I	CCWWGG	1 cut(s)	13
EcoT38I	GRGCYC	3 cut(s)	91, 312, 327
EgeI	GGCGCC	1 cut(s)	10
EheI	GGCGCC	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	13
FaeI	CATG	2 cut(s)	146, 349
FaiI	YATR	4 cut(s)	144, 347, 454, 456
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	2 cut(s)	142, 345
FauI	CCCGC	1 cut(s)	251
FauNDI	CATATG	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	1 cut(s)	224
FriOI	GRGCYC	3 cut(s)	91, 312, 327
Fsp4HI	GCNGC	1 cut(s)	224
FspBI	CTAG	3 cut(s)	5, 14, 410
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	1 cut(s)	224
GsuI	CTGGAG	1 cut(s)	105
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	223, 344
HapII	CCGG	3 cut(s)	216, 255, 474
HhaI	GCGC	1 cut(s)	11
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	2 cut(s)	146, 349
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HpaI	GTTAAC	1 cut(s)	436
HpaII	CCGG	3 cut(s)	216, 255, 474
HphI	GGTGA	2 cut(s)	242, 328
Hpy166II	GTNNAC	2 cut(s)	241, 436
Hpy188III	TCNNGA	3 cut(s)	293, 328, 352
Hpy8I	GTNNAC	2 cut(s)	241, 436
HpyAV	CCTTC	2 cut(s)	194, 313
HpyCH4V	TGCA	2 cut(s)	284, 373
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 167
HpyF3I	CTNAG	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	2 cut(s)	146, 349
HspAI	GCGC	1 cut(s)	9
KasI	GGCGCC	1 cut(s)	8
KspAI	GTTAAC	1 cut(s)	436
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	3 cut(s)	86, 261, 322
LpnPI	CCDG	8 cut(s)	69, 143, 161, 229, 268, 326, 372, 444
MaeI	CTAG	3 cut(s)	5, 14, 410
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	1 cut(s)	291
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	1 cut(s)	289
MboII	GAAGA	2 cut(s)	88, 348
MhlI	GDGCHC	3 cut(s)	91, 312, 327
MlsI	TGGCCA	1 cut(s)	344
MluCI	AATT	3 cut(s)	56, 162, 210
MluNI	TGGCCA	1 cut(s)	344
Mly113I	GGCGCC	1 cut(s)	9
MnlI	CCTC	3 cut(s)	97, 226, 289
Mox20I	TGGCCA	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	344
MseI	TTAA	1 cut(s)	435
Msp20I	TGGCCA	1 cut(s)	344
MspI	CCGG	3 cut(s)	216, 255, 474
MspR9I	CCNGG	3 cut(s)	255, 474, 475
Mva1269I	GAATGC	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	15, 167
NarI	GGCGCC	1 cut(s)	9
NciI	CCSGG	3 cut(s)	255, 474, 475
NdeI	CATATG	1 cut(s)	454
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	2 cut(s)	146, 349
NlaIV	GGNNCC	2 cut(s)	10, 396
PctI	GAATGC	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	225
PluTI	GGCGCC	1 cut(s)	12
Psp124BI	GAGCTC	3 cut(s)	91, 312, 327
PspN4I	GGNNCC	2 cut(s)	10, 396
PspPI	GGNCC	3 cut(s)	139, 221, 395
RsaI	GTAC	2 cut(s)	251, 471
RsaNI	GTAC	2 cut(s)	250, 470
SacI	GAGCTC	3 cut(s)	91, 312, 327
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	1 cut(s)	224
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	3 cut(s)	139, 221, 395
ScrFI	CCNGG	3 cut(s)	255, 474, 475
SduI	GDGCHC	3 cut(s)	91, 312, 327
SfcI	CTRYAG	1 cut(s)	205
SfoI	GGCGCC	1 cut(s)	10
SinI	GGWCC	2 cut(s)	139, 395
SmaI	CCCGGG	1 cut(s)	475
SmlI	CTYRAG	2 cut(s)	311, 326
SmoI	CTYRAG	2 cut(s)	311, 326
Sse9I	AATT	3 cut(s)	56, 162, 210
SsiI	CCGC	3 cut(s)	194, 224, 258
SspDI	GGCGCC	1 cut(s)	8
SspMI	CTAG	3 cut(s)	5, 14, 410
SstI	GAGCTC	3 cut(s)	91, 312, 327
StyD4I	CCNGG	3 cut(s)	253, 472, 473
StyI	CCWWGG	1 cut(s)	13
TaqI	TCGA	1 cut(s)	353
TaqII	GACCGA	1 cut(s)	412
TasI	AATT	3 cut(s)	56, 162, 210
TauI	GCSGC	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	1 cut(s)	106
TspMI	CCCGGG	1 cut(s)	473
TspRI	CASTG	1 cut(s)	106
VpaK11BI	GGWCC	2 cut(s)	139, 395
XapI	RAATTY	1 cut(s)	56
XmaI	CCCGGG	1 cut(s)	473
XmaJI	CCTAGG	1 cut(s)	13
XmiI	GTMKAC	1 cut(s)	240
XspI	CTAG	3 cut(s)	5, 14, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.