Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Reverse (-)

30344811 .. 30345143

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCGCAAAACCGCAGCCAAGTCCAAAAATGTGTCATCCGGCAGCCCATGGTGCAGTCCTGACCGTGTCAAGTACTTGGGCCCATTCTCCAATGAAGCCCCGTCTTATCTCACCGGAGAGTTTCCCGGTGACTATGGTTGGGACACAGCTGGGCTCTTAGTCGATCCCGAGACATTTGCCAAGAACCGTGAGCTCGAGGTCATCCATTCAAGATGGGCCATGCTCGGTGCTCTAGGATGTGTCTTCCCTGAATTCCTAGCTCGTAATGGAGCAAGTTCGGAGAAGCTGTTTGGTTCAAGGCAGGAGCTCAAATCTTCAGTGAGGGTGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

111

Amino Acids

12.1

Weight (kDa)

7.76

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	33 - 91	8e-22	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AciI	CCGC	1 cut(s)	12
AclWI	GGATC	1 cut(s)	158
AcsI	RAATTY	1 cut(s)	251
AcuI	CTGAAG	1 cut(s)	300
AfaI	GTAC	1 cut(s)	74
AgsI	TTSAA	2 cut(s)	210, 297
AluBI	AGCT	5 cut(s)	149, 193, 260, 286, 307
AluI	AGCT	5 cut(s)	149, 193, 260, 286, 307
Alw21I	GWGCWC	3 cut(s)	195, 232, 309
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	158
Ama87I	CYCGRG	2 cut(s)	167, 194
AoxI	GGCC	2 cut(s)	79, 216
ApaI	GGGCCC	1 cut(s)	83
ApeKI	GCWGC	2 cut(s)	14, 42
ApoI	RAATTY	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	3 cut(s)	79, 80, 216
AsuC2I	CCSGG	1 cut(s)	126
AsuHPI	GGTGA	2 cut(s)	103, 140
AvaI	CYCGRG	2 cut(s)	167, 194
BaeGI	GKGCMC	1 cut(s)	83
BanII	GRGCYC	4 cut(s)	83, 156, 195, 309
BbsI	GAAGAC	1 cut(s)	235
Bbv12I	GWGCWC	3 cut(s)	195, 232, 309
BbvI	GCAGC	2 cut(s)	26, 54
BccI	CCATC	1 cut(s)	207
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BcnI	CCSGG	1 cut(s)	126
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	3 cut(s)	233, 257, 331
BisI	GCNGC	2 cut(s)	15, 43
BlsI	GCNGC	2 cut(s)	16, 44
BmcAI	AGTACT	1 cut(s)	74
Bme1390I	CCNGG	1 cut(s)	126
BmeT110I	CYCGRG	2 cut(s)	167, 194
BmgT120I	GGNCC	3 cut(s)	79, 80, 216
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	235
BpuMI	CCSGG	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	272, 302
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	3 cut(s)	35, 201, 242
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	2 cut(s)	26, 54
BseYI	CCCAGC	1 cut(s)	149
BsgI	GTGCAG	1 cut(s)	73
BshFI	GGCC	2 cut(s)	81, 218
BsiHKAI	GWGCWC	3 cut(s)	195, 232, 309
BsiHKCI	CYCGRG	2 cut(s)	167, 194
BsiSI	CCGG	3 cut(s)	39, 114, 126
BslFI	GGGAC	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	2 cut(s)	81, 218
BsoBI	CYCGRG	2 cut(s)	167, 194
Bsp120I	GGGCCC	1 cut(s)	79
Bsp1286I	GDGCHC	5 cut(s)	83, 156, 195, 232, 309
Bsp143I	GATC	1 cut(s)	163
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	2 cut(s)	81, 218
BspLI	GGNNCC	1 cut(s)	81
BspPI	GGATC	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	1 cut(s)	163
BssT1I	CCWWGG	1 cut(s)	47
Bst4CI	ACNGT	2 cut(s)	65, 188
BstDEI	CTNAG	1 cut(s)	157
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	3 cut(s)	35, 201, 242
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	124
BstSLI	GKGCMC	1 cut(s)	83
BstV1I	GCAGC	2 cut(s)	26, 54
BstV2I	GAAGAC	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	81, 218
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	3 cut(s)	35, 201, 242
BtsIMutI	CAGTG	1 cut(s)	324
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	3 cut(s)	79, 80, 216
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	2 cut(s)	48, 220
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	1 cut(s)	157
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
Ecl136II	GAGCTC	2 cut(s)	193, 307
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	4 cut(s)	83, 156, 195, 309
Eco53kI	GAGCTC	2 cut(s)	193, 307
Eco57I	CTGAAG	1 cut(s)	300
Eco88I	CYCGRG	2 cut(s)	167, 194
EcoICRI	GAGCTC	2 cut(s)	193, 307
EcoRI	GAATTC	1 cut(s)	251
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	4 cut(s)	83, 156, 195, 309
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	2 cut(s)	51, 223
FaiI	YATR	3 cut(s)	49, 135, 221
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	2 cut(s)	47, 219
Fnu4HI	GCNGC	2 cut(s)	15, 43
FokI	GGATG	3 cut(s)	22, 188, 249
FriOI	GRGCYC	4 cut(s)	83, 156, 195, 309
Fsp4HI	GCNGC	2 cut(s)	15, 43
FspBI	CTAG	3 cut(s)	233, 257, 331
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	2 cut(s)	15, 43
GsaI	CCCAGC	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	81, 218
HapII	CCGG	3 cut(s)	39, 114, 126
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	51, 223
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HpaII	CCGG	3 cut(s)	39, 114, 126
HphI	GGTGA	2 cut(s)	103, 140
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	3 cut(s)	59, 167, 210
Hpy8I	GTNNAC	1 cut(s)	328
HpyCH4III	ACNGT	2 cut(s)	65, 188
HpyCH4V	TGCA	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	1 cut(s)	157
Hsp92II	CATG	2 cut(s)	51, 223
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	2 cut(s)	269, 304
LpnPI	CCDG	7 cut(s)	52, 72, 127, 135, 139, 261, 287
Lsp1109I	GCAGC	2 cut(s)	26, 54
MaeI	CTAG	3 cut(s)	233, 257, 331
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	2 cut(s)	235, 306
MhlI	GDGCHC	5 cut(s)	83, 156, 195, 232, 309
MluCI	AATT	1 cut(s)	251
MnlI	CCTC	2 cut(s)	190, 315
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	3 cut(s)	39, 114, 126
MspR9I	CCNGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	51
NciI	CCSGG	1 cut(s)	126
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	2 cut(s)	51, 223
NlaIV	GGNNCC	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	128
NsbI	TGCGCA	1 cut(s)	5
PaeR7I	CTCGAG	1 cut(s)	194
PflFI	GACNNNGTC	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	16, 44
Psp124BI	GAGCTC	2 cut(s)	195, 309
PspFI	CCCAGC	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	81
PspOMI	GGGCCC	1 cut(s)	79
PspPI	GGNCC	3 cut(s)	79, 80, 216
PspXI	VCTCGAGB	1 cut(s)	194
PsyI	GACNNNGTC	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
SacI	GAGCTC	2 cut(s)	195, 309
SatI	GCNGC	2 cut(s)	15, 43
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	3 cut(s)	79, 80, 216
ScaI	AGTACT	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	126
SduI	GDGCHC	5 cut(s)	83, 156, 195, 232, 309
SetI	ASST	6 cut(s)	151, 195, 201, 262, 288, 309
Sfr274I	CTCGAG	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	251
SsiI	CCGC	1 cut(s)	12
SspMI	CTAG	3 cut(s)	233, 257, 331
SstI	GAGCTC	2 cut(s)	195, 309
StyD4I	CCNGG	1 cut(s)	124
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	65, 188
TaqI	TCGA	2 cut(s)	162, 195
TasI	AATT	1 cut(s)	251
TatI	WGTACW	1 cut(s)	72
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	2 cut(s)	14, 42
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	108
TspRI	CASTG	1 cut(s)	324
Tth111I	GACNNNGTC	1 cut(s)	65
XapI	RAATTY	1 cut(s)	251
XhoI	CTCGAG	1 cut(s)	194
XspI	CTAG	3 cut(s)	233, 257, 331
ZrmI	AGTACT	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.