Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007131.1

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Reverse (-)

14902 .. 15604

Gene Structure 703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007131.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgcgcaaaaccgcagccaagtccaaaactgtttcatcaggcagccctgggtacggtgcagaccgtgtcaagcacttgggccaattctctggtgaggctccatcatacctcaacggagagtttcccgcggactacggttgggacactgctgggctatcagcagatcctgagacctttgccaaaaaccgtgagcttgaggtcatccattccagatgggccatgctcggagccttgggctgtgttttccccgaactcctagcttgcaatggagtccagttcggcgaagctgtttggttcaaggccggagcccagatatttagtgagggctgcagagttgtcagtgggcctctcggtgaggtggtagacgcattgtaccccggcgggagtttcgacccgttaggccttgcagaagatccaaaagcttttgctgagctaaaggtaaaggagctcaagaatggaagactagctatgttttccatgttcgggtttttcgtacaagttgttgttaccgggaaggggccaatcgagaacctggctgaccacttagctgaccctgttaacaacaatgctaggtcagatgccaccaactttgttcccagaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

201

Amino Acids

21.49

Weight (kDa)

5.66

Isoelectric Point (pI)

18.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AccI	GTMKAC	1 cut(s)	363
AccII	CGCG	1 cut(s)	128
AciI	CCGC	4 cut(s)	12, 126, 128, 381
AclWI	GGATC	2 cut(s)	158, 407
AfaI	GTAC	3 cut(s)	53, 374, 495
AfiI	CCNNNNNNNGG	3 cut(s)	53, 483, 516
AgsI	TTSAA	1 cut(s)	298
AjnI	CCWGG	2 cut(s)	46, 531
AluBI	AGCT	8 cut(s)	193, 260, 287, 422, 433, 448, 467, 548
AluI	AGCT	8 cut(s)	193, 260, 287, 422, 433, 448, 467, 548
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	2 cut(s)	158, 407
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	6 cut(s)	79, 216, 300, 344, 400, 518
ApeKI	GCWGC	3 cut(s)	14, 42, 327
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	4 cut(s)	79, 216, 344, 518
AsuC2I	CCSGG	2 cut(s)	378, 511
AsuHPI	GGTGA	2 cut(s)	104, 365
BanII	GRGCYC	2 cut(s)	310, 450
BbsI	GAAGAC	1 cut(s)	466
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	3 cut(s)	26, 54, 314
BccI	CCATC	2 cut(s)	109, 207
BciT130I	CCWGG	2 cut(s)	48, 533
BcnI	CCSGG	2 cut(s)	378, 511
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	3 cut(s)	257, 464, 570
BfmI	CTRYAG	1 cut(s)	328
BisI	GCNGC	3 cut(s)	15, 43, 328
BlpI	GCTNAGC	1 cut(s)	429
BlsI	GCNGC	3 cut(s)	16, 44, 329
Bme1390I	CCNGG	4 cut(s)	48, 378, 511, 533
BmgT120I	GGNCC	4 cut(s)	79, 216, 344, 518
BmiI	GGNNCC	4 cut(s)	99, 229, 307, 519
BmrFI	CCNGG	4 cut(s)	48, 378, 511, 533
BmsI	GCATC	1 cut(s)	568
BpiI	GAAGAC	1 cut(s)	466
Bpu1102I	GCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	2 cut(s)	215, 434
BpuMI	CCSGG	2 cut(s)	378, 511
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	5 cut(s)	46, 47, 126, 231, 376
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 483, 516
Bse1I	ACTGG	1 cut(s)	274
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	2 cut(s)	48, 533
BseDI	CCNNGG	5 cut(s)	46, 47, 126, 231, 376
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	3 cut(s)	53, 483, 516
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	2 cut(s)	159, 420
BseNI	ACTGG	1 cut(s)	274
BseXI	GCAGC	3 cut(s)	26, 54, 314
BseYI	CCCAGC	1 cut(s)	149
BsgI	GTGCAG	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	6 cut(s)	81, 218, 302, 346, 402, 520
BsiHKAI	GWGCWC	1 cut(s)	450
BsiSI	CCGG	3 cut(s)	303, 378, 510
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	3 cut(s)	53, 483, 516
BsmAI	GTCTC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	6 cut(s)	81, 218, 302, 346, 402, 520
Bso31I	GGTCTC	1 cut(s)	164
Bsp1286I	GDGCHC	2 cut(s)	310, 450
Bsp143I	GATC	2 cut(s)	163, 412
Bsp1720I	GCTNAGC	1 cut(s)	429
BspACI	CCGC	4 cut(s)	12, 126, 128, 381
BspANI	GGCC	6 cut(s)	81, 218, 302, 346, 402, 520
BspCNI	CTCAG	2 cut(s)	160, 421
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	4 cut(s)	99, 229, 307, 519
BspMAI	CTGCAG	1 cut(s)	332
BspPI	GGATC	2 cut(s)	158, 407
BspTNI	GGTCTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	274
BssECI	CCNNGG	5 cut(s)	46, 47, 126, 231, 376
BssMI	GATC	2 cut(s)	163, 412
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	48, 533
Bst4CI	ACNGT	5 cut(s)	31, 56, 65, 137, 188
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	3 cut(s)	168, 429, 544
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	201
BstFNI	CGCG	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	2 cut(s)	166, 415
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	2 cut(s)	163, 412
BstNI	CCWGG	2 cut(s)	48, 533
BstSCI	CCNGG	4 cut(s)	46, 376, 509, 531
BstSFI	CTRYAG	1 cut(s)	328
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	3 cut(s)	26, 54, 314
BstV2I	GAAGAC	1 cut(s)	466
BstX2I	RGATCY	2 cut(s)	163, 412
BstXI	CCANNNNNNTGG	1 cut(s)	89
BstYI	RGATCY	2 cut(s)	163, 412
BsuRI	GGCC	6 cut(s)	81, 218, 302, 346, 402, 520
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	201
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	144, 346
Cac8I	GCNNGC	1 cut(s)	262
CaiI	CAGNNNCTG	1 cut(s)	167
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	4 cut(s)	79, 216, 344, 518
Cfr42I	CCGCGG	1 cut(s)	129
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	3 cut(s)	52, 373, 494
CspCI	CAANNNNNGTGG	2 cut(s)	571, 606
CviAII	CATG	2 cut(s)	220, 478
CviQI	GTAC	3 cut(s)	52, 373, 494
DdeI	CTNAG	3 cut(s)	168, 429, 544
DpnI	GATC	2 cut(s)	165, 414
DpnII	GATC	2 cut(s)	163, 412
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	231
Eco147I	AGGCCT	1 cut(s)	402
Eco24I	GRGCYC	2 cut(s)	310, 450
Eco31I	GGTCTC	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	448
EcoICRI	GAGCTC	1 cut(s)	448
EcoRII	CCWGG	2 cut(s)	46, 531
EcoT14I	CCWWGG	1 cut(s)	231
EcoT38I	GRGCYC	2 cut(s)	310, 450
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	2 cut(s)	223, 481
FaiI	YATR	4 cut(s)	106, 221, 470, 479
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	2 cut(s)	219, 477
FauI	CCCGC	2 cut(s)	133, 374
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	3 cut(s)	15, 43, 328
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	2 cut(s)	310, 450
Fsp4HI	GCNGC	3 cut(s)	15, 43, 328
FspBI	CTAG	3 cut(s)	257, 464, 570
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	3 cut(s)	15, 43, 328
GsaI	CCCAGC	1 cut(s)	153
HaeIII	GGCC	6 cut(s)	81, 218, 302, 346, 402, 520
HapII	CCGG	3 cut(s)	303, 378, 510
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	223, 481
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	1 cut(s)	270
HpaI	GTTAAC	1 cut(s)	559
HpaII	CCGG	3 cut(s)	303, 378, 510
HphI	GGTGA	2 cut(s)	104, 365
Hpy166II	GTNNAC	2 cut(s)	364, 559
Hpy188I	TCNGA	2 cut(s)	227, 577
Hpy188III	TCNNGA	4 cut(s)	167, 210, 451, 526
Hpy8I	GTNNAC	2 cut(s)	364, 559
HpyAV	CCTTC	1 cut(s)	508
HpyCH4III	ACNGT	5 cut(s)	31, 56, 65, 137, 188
HpyCH4V	TGCA	4 cut(s)	59, 264, 330, 407
HpyF3I	CTNAG	3 cut(s)	168, 429, 544
Hsp92II	CATG	2 cut(s)	223, 481
HspAI	GCGC	1 cut(s)	4
KspAI	GTTAAC	1 cut(s)	559
KspI	CCGCGG	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	163, 412
LmnI	GCTCC	4 cut(s)	103, 227, 305, 445
Lsp1109I	GCAGC	3 cut(s)	26, 54, 314
LweI	GCATC	1 cut(s)	568
MaeI	CTAG	3 cut(s)	257, 464, 570
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	2 cut(s)	165, 414
MboI	GATC	2 cut(s)	163, 412
MboII	GAAGA	2 cut(s)	422, 471
MflI	RGATCY	2 cut(s)	163, 412
MhlI	GDGCHC	2 cut(s)	310, 450
MluCI	AATT	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	279
MnlI	CCTC	6 cut(s)	88, 119, 190, 316, 349, 357
MseI	TTAA	1 cut(s)	558
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	3 cut(s)	303, 378, 510
MspR9I	CCNGG	4 cut(s)	48, 378, 511, 533
MvaI	CCWGG	2 cut(s)	48, 533
MvnI	CGCG	1 cut(s)	128
NciI	CCSGG	2 cut(s)	378, 511
NdeII	GATC	2 cut(s)	163, 412
NlaIII	CATG	2 cut(s)	223, 481
NlaIV	GGNNCC	4 cut(s)	99, 229, 307, 519
NsbI	TGCGCA	1 cut(s)	5
PasI	CCCWGGG	1 cut(s)	47
PceI	AGGCCT	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	489
PflFI	GACNNNGTC	1 cut(s)	65
PkrI	GCNGC	3 cut(s)	16, 44, 329
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
Psp124BI	GAGCTC	1 cut(s)	450
Psp6I	CCWGG	2 cut(s)	46, 531
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	2 cut(s)	46, 531
PspN4I	GGNNCC	4 cut(s)	99, 229, 307, 519
PspPI	GGNCC	4 cut(s)	79, 216, 344, 518
PstI	CTGCAG	1 cut(s)	332
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	2 cut(s)	163, 412
PsyI	GACNNNGTC	1 cut(s)	65
RsaI	GTAC	3 cut(s)	53, 374, 495
RsaNI	GTAC	3 cut(s)	52, 373, 494
SacI	GAGCTC	1 cut(s)	450
SacII	CCGCGG	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	3 cut(s)	15, 43, 328
Sau3AI	GATC	2 cut(s)	163, 412
Sau96I	GGNCC	4 cut(s)	79, 216, 344, 518
SchI	GAGTC	1 cut(s)	279
ScrFI	CCNGG	4 cut(s)	48, 378, 511, 533
SduI	GDGCHC	2 cut(s)	310, 450
SfaNI	GCATC	1 cut(s)	568
SfcI	CTRYAG	1 cut(s)	328
Sfr303I	CCGCGG	1 cut(s)	129
SgrBI	CCGCGG	1 cut(s)	129
SmlI	CTYRAG	2 cut(s)	194, 449
SmoI	CTYRAG	2 cut(s)	194, 449
Sse9I	AATT	1 cut(s)	83
SseBI	AGGCCT	1 cut(s)	402
SsiI	CCGC	4 cut(s)	12, 126, 128, 381
SspMI	CTAG	3 cut(s)	257, 464, 570
SstI	GAGCTC	1 cut(s)	450
StuI	AGGCCT	1 cut(s)	402
StyD4I	CCNGG	4 cut(s)	46, 376, 509, 531
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	5 cut(s)	31, 56, 65, 137, 188
TaqI	TCGA	2 cut(s)	390, 525
TasI	AATT	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	2 cut(s)	151, 346
TseI	GCWGC	3 cut(s)	14, 42, 327
TspDTI	ATGAA	1 cut(s)	24
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	2 cut(s)	151, 346
Tth111I	GACNNNGTC	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	3 cut(s)	257, 464, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.