Prupe.3G004100_v2.0.a1

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000275
Physical Location & Seq
Forward (+)
271589 .. 272612
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G004100.1

Sequence Viewer

Length: 798 bp
ATGGCAACTATGGCTCTCTCATCCCCATTCACCGGGAAGGCCATTCCTTTAAACACACAGACAGAGTTCTCAACTGTCCAAGGCAATGGTAGAGTTTCTATGAGGAGGGCAGCCAGAAAGCCAGCTGTATCATCAGGCAGCCCCTGGTACGGCCCTGATCGTGTCAAATACCTCGGACCATTCTCTGGTGAGGCGCCATCTTACCTAACCGGCGAATTCCCCGGTGACTATGGTTGGGACACCGCTGGGCTCTCAGCTGACCCTGAAACTTTTGCCAAGAACCGTGAACTCGAGGTTATTCACTCAAGATGGGCAATGCTTGGGGCTTTGGGCTGTGTTTTCCCAGAGCTACTCTCCAGAAATGGAGTCAAGTTTGGTGAGGCAGTGTGGTTCAAAGCTGGAGCTCAAATCTTCAGTGAGGGTGGCCTTGACTACCTTGGAAACCCAAGCCTAGTTCATGCACAGAGCATTCTCGCAATATGGGCAACTCAGGTGGTTCTCATGGGTGCTGTTGAGGGTTACCGCATTGCCGGAGGACCACTCGGTGAGGTCACTGACCCACTGTACCCAGGAGGCAGCTTTGACCCTTTGGGGCTTGCAGATGACCCAGAGGCATTTGCAGAGCTTAAGGTGAAAGAACTTAAGAATGGCCGACTTGCCATGTTCTCAATGTTTGGGTTCTTTGTGCAGGCCATTGTTACTGGAAAGGGCCCTATTGAGAACCTTGCTGATCATCTCGCTGATCCTGTTAACAACAATGCCTGGGCTTATGCCACCAACTTCGTACCCGGCAAGTGA

Protein Analysis

266

Amino Acids

28.33

Weight (kDa)

5.29

Isoelectric Point (pI)

22.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis pycom09g04690
rosa_chinensis RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 193
AccB7I CCANNNNNTGG 1 cut(s) 185
AciI CCGC 2 cut(s) 243, 523
AclWI GGATC 1 cut(s) 737
AcoI YGGCCR 1 cut(s) 649
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 1 cut(s) 397
AcyI GRCGYC 1 cut(s) 194
AdeI CACNNNGTG 1 cut(s) 545
AfaI GTAC 3 cut(s) 149, 566, 786
AfiI CCNNNNNNNGG 3 cut(s) 32, 149, 185
AflII CTTAAG 2 cut(s) 626, 641
AgsI TTSAA 1 cut(s) 394
AjnI CCWGG 3 cut(s) 143, 568, 761
AluBI AGCT 7 cut(s) 125, 257, 349, 398, 404, 579, 625
AluI AGCT 7 cut(s) 125, 257, 349, 398, 404, 579, 625
Alw21I GWGCWC 1 cut(s) 406
AlwI GGATC 1 cut(s) 737
AlwNI CAGNNNCTG 1 cut(s) 144
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 6 cut(s) 39, 151, 424, 649, 690, 709
ApaI GGGCCC 1 cut(s) 713
ApeKI GCWGC 3 cut(s) 110, 138, 576
ApoI RAATTY 1 cut(s) 215
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 5 cut(s) 152, 176, 536, 709, 710
AsuC2I CCSGG 3 cut(s) 34, 222, 789
AsuHPI GGTGA 6 cut(s) 22, 200, 236, 389, 557, 643
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 2 cut(s) 176, 536
BaeGI GKGCMC 1 cut(s) 713
BanI GGYRCC 1 cut(s) 193
BanII GRGCYC 3 cut(s) 252, 406, 713
Bbv12I GWGCWC 1 cut(s) 406
BbvI GCAGC 3 cut(s) 122, 150, 588
BccI CCATC 2 cut(s) 205, 303
BceAI ACGGC 1 cut(s) 166
BciT130I CCWGG 3 cut(s) 145, 570, 763
BclI TGATCA 1 cut(s) 730
BcnI CCSGG 3 cut(s) 34, 222, 789
BfaI CTAG 1 cut(s) 452
BfoI RGCGCY 1 cut(s) 197
BfrI CTTAAG 2 cut(s) 626, 641
BisI GCNGC 3 cut(s) 111, 139, 577
BlsI GCNGC 3 cut(s) 112, 140, 578
Bme1390I CCNGG 6 cut(s) 34, 145, 222, 570, 763, 789
Bme18I GGWCC 2 cut(s) 176, 536
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 5 cut(s) 152, 176, 536, 709, 710
BmiI GGNNCC 2 cut(s) 195, 711
BmrFI CCNGG 6 cut(s) 34, 145, 222, 570, 763, 789
BplI GAGNNNNNCTC 4 cut(s) 338, 370, 525, 557
BpmI CTGGAG 2 cut(s) 340, 420
BpuEI CTTGAG 1 cut(s) 289
BpuMI CCSGG 3 cut(s) 34, 222, 789
BsaHI GRCGYC 1 cut(s) 194
BsaJI CCNNGG 7 cut(s) 79, 143, 172, 220, 436, 568, 762
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 149, 185
Bse118I RCCGGY 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 706
Bse3DI GCAATG 3 cut(s) 91, 321, 525
BseBI CCWGG 3 cut(s) 145, 570, 763
BseDI CCNNGG 7 cut(s) 79, 143, 172, 220, 436, 568, 762
BseGI GGATG 1 cut(s) 20
BseLI CCNNNNNNNGG 3 cut(s) 32, 149, 185
BseMI GCAATG 3 cut(s) 91, 321, 525
BseMII CTCAG 2 cut(s) 267, 503
BseNI ACTGG 1 cut(s) 706
BseRI GAGGAG 1 cut(s) 118
BseSI GKGCMC 1 cut(s) 713
BseXI GCAGC 3 cut(s) 122, 150, 588
BseYI CCCAGC 1 cut(s) 245
BsgI GTGCAG 1 cut(s) 707
BshFI GGCC 6 cut(s) 41, 153, 426, 651, 692, 711
BshNI GGYRCC 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 406
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 5 cut(s) 33, 210, 222, 531, 789
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 3 cut(s) 32, 149, 185
BsmFI GGGAC 1 cut(s) 251
BsmI GAATGC 1 cut(s) 468
BsnI GGCC 6 cut(s) 41, 153, 426, 651, 692, 711
BsoBI CYCGRG 1 cut(s) 290
Bsp120I GGGCCC 1 cut(s) 709
Bsp1286I GDGCHC 3 cut(s) 252, 406, 713
Bsp143I GATC 3 cut(s) 157, 730, 742
BspACI CCGC 2 cut(s) 243, 523
BspANI GGCC 6 cut(s) 41, 153, 426, 651, 692, 711
BspCNI CTCAG 2 cut(s) 266, 502
BspLI GGNNCC 2 cut(s) 195, 711
BspPI GGATC 1 cut(s) 737
BspT107I GGYRCC 1 cut(s) 193
BspTI CTTAAG 2 cut(s) 626, 641
BsrDI GCAATG 3 cut(s) 91, 321, 525
BsrFI RCCGGY 1 cut(s) 209
BsrI ACTGG 1 cut(s) 706
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 7 cut(s) 79, 143, 172, 220, 436, 568, 762
BssMI GATC 3 cut(s) 157, 730, 742
BssNI GRCGYC 1 cut(s) 194
BssT1I CCWWGG 2 cut(s) 79, 436
Bst2UI CCWGG 3 cut(s) 145, 570, 763
Bst4CI ACNGT 3 cut(s) 76, 284, 564
BstACI GRCGYC 1 cut(s) 194
BstAFI CTTAAG 2 cut(s) 626, 641
BstC8I GCNNGC 3 cut(s) 123, 597, 690
BstDEI CTNAG 2 cut(s) 253, 489
BstEII GGTNACC 1 cut(s) 518
BstF5I GGATG 1 cut(s) 20
BstH2I RGCGCY 1 cut(s) 197
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 3 cut(s) 160, 733, 745
BstMBI GATC 3 cut(s) 157, 730, 742
BstMWI GCNNNNNNNGC 2 cut(s) 11, 482
BstNI CCWGG 3 cut(s) 145, 570, 763
BstPI GGTNACC 1 cut(s) 518
BstSCI CCNGG 6 cut(s) 32, 143, 220, 568, 761, 787
BstSLI GKGCMC 1 cut(s) 713
BstV1I GCAGC 3 cut(s) 122, 150, 588
BstXI CCANNNNNNTGG 1 cut(s) 86
BsuRI GGCC 6 cut(s) 41, 153, 426, 651, 692, 711
BtsCI GGATG 1 cut(s) 20
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 4 cut(s) 390, 421, 552, 560
Cac8I GCNNGC 3 cut(s) 123, 597, 690
CaiI CAGNNNCTG 1 cut(s) 144
CfoI GCGC 1 cut(s) 196
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 5 cut(s) 152, 176, 536, 709, 710
Csp6I GTAC 3 cut(s) 148, 565, 785
CspCI CAANNNNNGTGG 2 cut(s) 474, 509
CviAII CATG 3 cut(s) 458, 502, 661
CviQI GTAC 3 cut(s) 148, 565, 785
DdeI CTNAG 2 cut(s) 253, 489
DinI GGCGCC 1 cut(s) 195
DpnI GATC 3 cut(s) 159, 732, 744
DpnII GATC 3 cut(s) 157, 730, 742
DraI TTTAAA 1 cut(s) 51
DraIII CACNNNGTG 1 cut(s) 545
EaeI YGGCCR 1 cut(s) 649
Ecl136II GAGCTC 1 cut(s) 404
Eco130I CCWWGG 2 cut(s) 79, 436
Eco24I GRGCYC 3 cut(s) 252, 406, 713
Eco47I GGWCC 2 cut(s) 176, 536
Eco53kI GAGCTC 1 cut(s) 404
Eco57I CTGAAG 1 cut(s) 397
Eco88I CYCGRG 1 cut(s) 290
Eco91I GGTNACC 1 cut(s) 518
EcoICRI GAGCTC 1 cut(s) 404
EcoO109I RGGNCCY 2 cut(s) 709, 710
EcoO65I GGTNACC 1 cut(s) 518
EcoRI GAATTC 1 cut(s) 215
EcoRII CCWGG 3 cut(s) 143, 568, 761
EcoT14I CCWWGG 2 cut(s) 79, 436
EcoT38I GRGCYC 3 cut(s) 252, 406, 713
EgeI GGCGCC 1 cut(s) 195
EheI GGCGCC 1 cut(s) 195
ErhI CCWWGG 2 cut(s) 79, 436
FaeI CATG 3 cut(s) 461, 505, 664
FaiI YATR 8 cut(s) 11, 101, 231, 459, 481, 503, 662, 771
FaqI GGGAC 1 cut(s) 251
FatI CATG 3 cut(s) 457, 501, 660
FbaI TGATCA 1 cut(s) 730
Fnu4HI GCNGC 3 cut(s) 111, 139, 577
FokI GGATG 1 cut(s) 7
FriOI GRGCYC 3 cut(s) 252, 406, 713
Fsp4HI GCNGC 3 cut(s) 111, 139, 577
FspBI CTAG 1 cut(s) 452
GlaI GCGC 1 cut(s) 195
GluI GCNGC 3 cut(s) 111, 139, 577
GsaI CCCAGC 1 cut(s) 249
GsuI CTGGAG 2 cut(s) 340, 420
HaeII RGCGCY 1 cut(s) 197
HaeIII GGCC 6 cut(s) 41, 153, 426, 651, 692, 711
HapII CCGG 5 cut(s) 33, 210, 222, 531, 789
HhaI GCGC 1 cut(s) 196
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 3 cut(s) 461, 505, 664
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HincII GTYRAC 1 cut(s) 751
HindII GTYRAC 1 cut(s) 751
HinfI GANTC 1 cut(s) 366
HpaI GTTAAC 1 cut(s) 751
HpaII CCGG 5 cut(s) 33, 210, 222, 531, 789
HphI GGTGA 6 cut(s) 22, 200, 236, 389, 557, 643
Hpy166II GTNNAC 2 cut(s) 287, 751
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 2 cut(s) 306, 357
Hpy8I GTNNAC 2 cut(s) 287, 751
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 3 cut(s) 76, 284, 564
HpyCH4V TGCA 4 cut(s) 461, 599, 620, 688
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 482
HpyF3I CTNAG 2 cut(s) 253, 489
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 3 cut(s) 461, 505, 664
HspAI GCGC 1 cut(s) 194
KasI GGCGCC 1 cut(s) 193
Ksp22I TGATCA 1 cut(s) 730
KspAI GTTAAC 1 cut(s) 751
Kzo9I GATC 3 cut(s) 157, 730, 742
LmnI GCTCC 1 cut(s) 401
Lsp1109I GCAGC 3 cut(s) 122, 150, 588
MaeI CTAG 1 cut(s) 452
MaeIII GTNAC 4 cut(s) 224, 518, 550, 697
MalI GATC 3 cut(s) 159, 732, 744
MboI GATC 3 cut(s) 157, 730, 742
MboII GAAGA 1 cut(s) 403
MhlI GDGCHC 3 cut(s) 252, 406, 713
MluCI AATT 1 cut(s) 215
Mly113I GGCGCC 1 cut(s) 194
MlyI GAGTC 1 cut(s) 375
MseI TTAA 4 cut(s) 50, 627, 642, 750
MspA1I CMGCKG 3 cut(s) 125, 245, 257
MspCI CTTAAG 2 cut(s) 626, 641
MspI CCGG 5 cut(s) 33, 210, 222, 531, 789
MspR9I CCNGG 6 cut(s) 34, 145, 222, 570, 763, 789
Mva1269I GAATGC 1 cut(s) 468
MvaI CCWGG 3 cut(s) 145, 570, 763
MwoI GCNNNNNNNGC 2 cut(s) 11, 482
NarI GGCGCC 1 cut(s) 194
NciI CCSGG 3 cut(s) 34, 222, 789
NdeII GATC 3 cut(s) 157, 730, 742
NlaIII CATG 3 cut(s) 461, 505, 664
NlaIV GGNNCC 2 cut(s) 195, 711
NmuCI GTSAC 2 cut(s) 224, 550
PaeR7I CTCGAG 1 cut(s) 290
PctI GAATGC 1 cut(s) 468
PflMI CCANNNNNTGG 1 cut(s) 185
PkrI GCNGC 3 cut(s) 112, 140, 578
PleI GAGTC 1 cut(s) 374
PluTI GGCGCC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 374
Psp124BI GAGCTC 1 cut(s) 406
Psp6I CCWGG 3 cut(s) 143, 568, 761
PspEI GGTNACC 1 cut(s) 518
PspFI CCCAGC 1 cut(s) 245
PspGI CCWGG 3 cut(s) 143, 568, 761
PspN4I GGNNCC 2 cut(s) 195, 711
PspOMI GGGCCC 1 cut(s) 709
PspPI GGNCC 5 cut(s) 152, 176, 536, 709, 710
PspXI VCTCGAGB 1 cut(s) 290
PstNI CAGNNNCTG 1 cut(s) 144
PvuII CAGCTG 2 cut(s) 125, 257
RsaI GTAC 3 cut(s) 149, 566, 786
RsaNI GTAC 3 cut(s) 148, 565, 785
SacI GAGCTC 1 cut(s) 406
SaqAI TTAA 4 cut(s) 50, 627, 642, 750
SatI GCNGC 3 cut(s) 111, 139, 577
Sau3AI GATC 3 cut(s) 157, 730, 742
Sau96I GGNCC 5 cut(s) 152, 176, 536, 709, 710
SchI GAGTC 1 cut(s) 375
ScrFI CCNGG 6 cut(s) 34, 145, 222, 570, 763, 789
SduI GDGCHC 3 cut(s) 252, 406, 713
SfoI GGCGCC 1 cut(s) 195
Sfr274I CTCGAG 1 cut(s) 290
SinI GGWCC 2 cut(s) 176, 536
SlaI CTCGAG 1 cut(s) 290
SmlI CTYRAG 4 cut(s) 290, 304, 626, 641
SmoI CTYRAG 4 cut(s) 290, 304, 626, 641
Sse9I AATT 1 cut(s) 215
SsiI CCGC 2 cut(s) 243, 523
SspDI GGCGCC 1 cut(s) 193
SspMI CTAG 1 cut(s) 452
SstI GAGCTC 1 cut(s) 406
StyD4I CCNGG 6 cut(s) 32, 143, 220, 568, 761, 787
StyI CCWWGG 2 cut(s) 79, 436
TaaI ACNGT 3 cut(s) 76, 284, 564
TaqI TCGA 1 cut(s) 291
TasI AATT 1 cut(s) 215
Tru1I TTAA 4 cut(s) 50, 627, 642, 750
Tru9I TTAA 4 cut(s) 50, 627, 642, 750
TscAI CASTG 4 cut(s) 390, 421, 559, 567
TseFI GTSAC 2 cut(s) 224, 550
TseI GCWGC 3 cut(s) 110, 138, 576
Tsp45I GTSAC 2 cut(s) 224, 550
TspDTI ATGAA 1 cut(s) 446
TspRI CASTG 4 cut(s) 390, 421, 559, 567
Van91I CCANNNNNTGG 1 cut(s) 185
Vha464I CTTAAG 2 cut(s) 626, 641
VpaK11BI GGWCC 2 cut(s) 176, 536
XapI RAATTY 1 cut(s) 215
XhoI CTCGAG 1 cut(s) 290
XspI CTAG 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.