Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000213.1

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Reverse (-)

474040 .. 475233

Gene Structure 1194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000213.1_g000119.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

atgatggatgccatccatggcgtcatggatagggactgcgccagccctaggctggtggtggatagaggcagtgccctaggcagctgcgtcgttgaaggcaacagaattgccggtggacctctccgtgaggtgatagacccactatatccaggtgggagttttgatccattaggtcttgctgaagatccagaagcttttgctgagcttaaggtgaaggagctcaagaataggagactggccatgttatccatgttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

85

Amino Acids

9.17

Weight (kDa)

4.99

Isoelectric Point (pI)

27.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	158, 179
AcoI	YGGCCR	1 cut(s)	237
AcuI	CTGAAG	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	21
AfiI	CCNNNNNNNGG	2 cut(s)	48, 52
AflII	CTTAAG	1 cut(s)	206
AgsI	TTSAA	1 cut(s)	95
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	4 cut(s)	84, 194, 205, 220
AluI	AGCT	4 cut(s)	84, 194, 205, 220
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	2 cut(s)	158, 179
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	2 cut(s)	81, 84
AspA2I	CCTAGG	2 cut(s)	47, 76
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	2 cut(s)	142, 223
AvaII	GGWCC	1 cut(s)	116
AvrII	CCTAGG	2 cut(s)	47, 76
BaeGI	GKGCMC	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	71, 93
BccI	CCATC	1 cut(s)	20
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BciT130I	CCWGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	2 cut(s)	48, 77
BfrI	CTTAAG	1 cut(s)	206
BisI	GCNGC	2 cut(s)	82, 85
BlnI	CCTAGG	2 cut(s)	47, 76
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	2 cut(s)	83, 86
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	150
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	206
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	3 cut(s)	16, 47, 76
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 52
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	3 cut(s)	16, 47, 76
BseGI	GGATG	2 cut(s)	12, 13
BseLI	CCNNNNNNNGG	2 cut(s)	48, 52
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	240
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	2 cut(s)	71, 93
BshFI	GGCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	48, 52
BsmAI	GTCTC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	2 cut(s)	76, 222
Bsp143I	GATC	2 cut(s)	163, 184
Bsp1720I	GCTNAGC	1 cut(s)	201
Bsp19I	CCATGG	1 cut(s)	16
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	193
BspPI	GGATC	2 cut(s)	158, 179
BspTI	CTTAAG	1 cut(s)	206
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	240
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	3 cut(s)	16, 47, 76
BssMI	GATC	2 cut(s)	163, 184
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	3 cut(s)	16, 47, 76
Bst2UI	CCWGG	1 cut(s)	150
BstACI	GRCGYC	1 cut(s)	21
BstAFI	CTTAAG	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	201
BstDSI	CCRYGG	1 cut(s)	16
BstF5I	GGATG	2 cut(s)	12, 13
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	2 cut(s)	166, 187
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	2 cut(s)	163, 184
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	148
BstSLI	GKGCMC	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	71, 93
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	12, 13
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	43
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	116
CseI	GACGC	2 cut(s)	10, 76
CviAII	CATG	4 cut(s)	17, 25, 241, 250
CviJI	RGCY	7 cut(s)	45, 52, 84, 194, 205, 220, 239
CviKI_1	RGCY	7 cut(s)	45, 52, 84, 194, 205, 220, 239
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	2 cut(s)	165, 186
DpnII	GATC	2 cut(s)	163, 184
EaeI	YGGCCR	1 cut(s)	237
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	3 cut(s)	16, 47, 76
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	116
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	3 cut(s)	16, 47, 76
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	3 cut(s)	16, 47, 76
FaeI	CATG	4 cut(s)	20, 28, 244, 253
FaiI	YATR	5 cut(s)	18, 26, 145, 242, 251
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	4 cut(s)	16, 24, 240, 249
Fnu4HI	GCNGC	2 cut(s)	82, 85
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	2 cut(s)	82, 85
FspBI	CTAG	2 cut(s)	48, 77
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	2 cut(s)	82, 85
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	1 cut(s)	111
HgaI	GACGC	2 cut(s)	10, 76
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	4 cut(s)	20, 28, 244, 253
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	192
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	2 cut(s)	142, 223
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	1 cut(s)	257
Hpy188III	TCNNGA	2 cut(s)	188, 223
Hpy8I	GTNNAC	1 cut(s)	116
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	89, 208
HpyF3I	CTNAG	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	4 cut(s)	20, 28, 244, 253
HspAI	GCGC	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	163, 184
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	7 cut(s)	38, 55, 124, 135, 162, 201, 221
Lsp1109I	GCAGC	2 cut(s)	71, 93
MaeI	CTAG	2 cut(s)	48, 77
MalI	GATC	2 cut(s)	165, 186
MboI	GATC	2 cut(s)	163, 184
MboII	GAAGA	1 cut(s)	194
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	2 cut(s)	76, 222
MlsI	TGGCCA	1 cut(s)	239
MluCI	AATT	1 cut(s)	105
MluNI	TGGCCA	1 cut(s)	239
MnlI	CCTC	3 cut(s)	59, 121, 129
Mox20I	TGGCCA	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	239
MseI	TTAA	1 cut(s)	207
Msp20I	TGGCCA	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	84
MspCI	CTTAAG	1 cut(s)	206
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	150
NcoI	CCATGG	1 cut(s)	16
NdeII	GATC	2 cut(s)	163, 184
NlaIII	CATG	4 cut(s)	20, 28, 244, 253
PkrI	GCNGC	2 cut(s)	83, 86
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspPI	GGNCC	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	84
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	2 cut(s)	82, 85
Sau3AI	GATC	2 cut(s)	163, 184
Sau96I	GGNCC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	2 cut(s)	76, 222
SetI	ASST	9 cut(s)	86, 121, 132, 154, 175, 196, 207, 213, 222
SinI	GGWCC	1 cut(s)	116
SmlI	CTYRAG	2 cut(s)	206, 221
SmoI	CTYRAG	2 cut(s)	206, 221
Sse9I	AATT	1 cut(s)	105
SspMI	CTAG	2 cut(s)	48, 77
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	3 cut(s)	16, 47, 76
TasI	AATT	1 cut(s)	105
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	2 cut(s)	81, 84
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	76
Vha464I	CTTAAG	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49
XmaJI	CCTAGG	2 cut(s)	47, 76
XspI	CTAG	2 cut(s)	48, 77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.