RLG00000019890

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
58188880 .. 58189683
804 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019890

Sequence Viewer

Length: 804 bp
ATGGCTTCTTCAGCAATGGCTCTCTCCTCTCCTTCTCTAGCTGGCCAAGCAATGAAGCTCAGTTCATCTTCATCCAACCTTAATGGTGAAGGCCGAGTCACAATGCGCAAAACTGCATCCAAGTCAAAGACGGTCTCATCTGGCAGCCCGTGGTATGGGCCCGACCGTGTCAAGTACTTGGGTCCATTCTCCGGTGAGGCACCGTCTTACCTCACCGGAGAATTCCCCGGTGACTATGGTTGGGACACTGCTGGCCTCTCAGCCGATCCCGAGACTTTTGCCAAGAACCGTGAGCTCGAAGTTATCCATTCAAGATGGGCCATGCTCGGTGCCCTAGGCTGTGTTTTCCCCGAACTCTTGGCTCGTAATGGAGTCAAGTTCGGCGAAGCTGTTTGGTTCAAGGCAGGAGCACAAATATTCAGTGAGGGTGGACTAGATTACTTGGGTAACCCGAGCTTAGTTCATGCTCAAAGCATTTTGGCAATTTGGGCGACACAAGTTATCTTGATGGGTGCAGTGGAAGGCTACAGAATTGCCGGTGGACCTCTCGGTGAGGTGATAGACCCACTTTATCCGGGTGGGCTTTTCGATCCATTAGGCCTTGCAGAAGACCCAGAGGCTTTTGCGGAGCTTAAGGTGAAGGAGCTCAAGAATGGGAGATTAGCCATGTTTTCTATGTTCGGGTTTTTCGTACAAGCCATTGTTACCGGAAAGGGACCGATAGAGAATTTGGCCGACCACTTAGCCGACCCTATTAACAACAATGCTTGGTCTTATGCCACCAACTTTGTTCCCGGAAAGTGA

Protein Analysis

268

Amino Acids

28.38

Weight (kDa)

5.3

Isoelectric Point (pI)

24.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 67 - 234 9.4e-51 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis pycom09g04690
rosa_chinensis RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 107
AccB1I GGYRCC 2 cut(s) 199, 329
AciI CCGC 1 cut(s) 626
AclWI GGATC 2 cut(s) 260, 584
AcoI YGGCCR 2 cut(s) 43, 732
AcsI RAATTY 2 cut(s) 221, 727
AfaI GTAC 2 cut(s) 176, 693
AfiI CCNNNNNNNGG 2 cut(s) 155, 191
AflII CTTAAG 1 cut(s) 632
AgsI TTSAA 2 cut(s) 312, 400
AluBI AGCT 7 cut(s) 41, 58, 295, 389, 456, 631, 646
AluI AGCT 7 cut(s) 41, 58, 295, 389, 456, 631, 646
Alw21I GWGCWC 3 cut(s) 297, 412, 648
Alw26I GTCTC 2 cut(s) 139, 266
AlwI GGATC 2 cut(s) 260, 584
Ama87I CYCGRG 2 cut(s) 269, 451
AoxI GGCC 7 cut(s) 43, 91, 158, 253, 318, 598, 732
ApaI GGGCCC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 144
ApoI RAATTY 2 cut(s) 221, 727
AspA2I CCTAGG 1 cut(s) 334
AspLEI GCGC 1 cut(s) 108
AspS9I GGNCC 6 cut(s) 158, 159, 182, 318, 542, 716
AsuC2I CCSGG 3 cut(s) 228, 576, 795
AsuHPI GGTGA 7 cut(s) 98, 205, 206, 242, 563, 568, 649
AvaI CYCGRG 2 cut(s) 269, 451
AvaII GGWCC 3 cut(s) 182, 542, 716
AvrII CCTAGG 1 cut(s) 334
BaeGI GKGCMC 2 cut(s) 162, 334
BalI TGGCCA 1 cut(s) 45
BanI GGYRCC 2 cut(s) 199, 329
BanII GRGCYC 3 cut(s) 162, 297, 648
BbsI GAAGAC 1 cut(s) 615
Bbv12I GWGCWC 3 cut(s) 297, 412, 648
BbvI GCAGC 1 cut(s) 156
BccI CCATC 2 cut(s) 309, 502
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BcnI CCSGG 3 cut(s) 228, 576, 795
BcoDI GTCTC 2 cut(s) 139, 266
BfaI CTAG 3 cut(s) 38, 335, 434
BfmI CTRYAG 1 cut(s) 526
BfrI CTTAAG 1 cut(s) 632
BisI GCNGC 1 cut(s) 145
BlnI CCTAGG 1 cut(s) 334
BlsI GCNGC 1 cut(s) 146
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 3 cut(s) 228, 576, 795
Bme18I GGWCC 3 cut(s) 182, 542, 716
BmeT110I CYCGRG 2 cut(s) 269, 451
BmgT120I GGNCC 6 cut(s) 158, 159, 182, 318, 542, 716
BmiI GGNNCC 5 cut(s) 160, 183, 201, 331, 717
BmrFI CCNGG 3 cut(s) 228, 576, 795
BmsI GCATC 1 cut(s) 125
BpiI GAAGAC 1 cut(s) 615
BpuEI CTTGAG 1 cut(s) 632
BpuMI CCSGG 3 cut(s) 228, 576, 795
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 3 cut(s) 149, 226, 334
BsaWI WCCGGW 3 cut(s) 191, 215, 707
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 191
Bse118I RCCGGY 1 cut(s) 536
Bse3DI GCAATG 2 cut(s) 21, 57
BseDI CCNNGG 3 cut(s) 149, 226, 334
BseGI GGATG 2 cut(s) 71, 116
BseLI CCNNNNNNNGG 2 cut(s) 155, 191
BseMI GCAATG 2 cut(s) 21, 57
BseMII CTCAG 2 cut(s) 73, 273
BseRI GAGGAG 1 cut(s) 16
BseSI GKGCMC 2 cut(s) 162, 334
BseXI GCAGC 1 cut(s) 156
BsgI GTGCAG 1 cut(s) 534
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 7 cut(s) 45, 93, 160, 255, 320, 600, 734
BshNI GGYRCC 2 cut(s) 199, 329
BsiEI CGRYCG 1 cut(s) 166
BsiHKAI GWGCWC 3 cut(s) 297, 412, 648
BsiHKCI CYCGRG 2 cut(s) 269, 451
BsiSI CCGG 7 cut(s) 192, 216, 228, 537, 575, 708, 795
BslFI GGGAC 2 cut(s) 257, 729
BslI CCNNNNNNNGG 2 cut(s) 155, 191
BsmAI GTCTC 2 cut(s) 139, 266
BsmFI GGGAC 2 cut(s) 257, 729
BsnI GGCC 7 cut(s) 45, 93, 160, 255, 320, 600, 734
Bso31I GGTCTC 1 cut(s) 139
BsoBI CYCGRG 2 cut(s) 269, 451
Bsp120I GGGCCC 1 cut(s) 158
Bsp1286I GDGCHC 5 cut(s) 162, 297, 334, 412, 648
Bsp143I GATC 2 cut(s) 265, 589
BspACI CCGC 1 cut(s) 626
BspANI GGCC 7 cut(s) 45, 93, 160, 255, 320, 600, 734
BspCNI CTCAG 2 cut(s) 72, 272
BspLI GGNNCC 5 cut(s) 160, 183, 201, 331, 717
BspPI GGATC 2 cut(s) 260, 584
BspT107I GGYRCC 2 cut(s) 199, 329
BspTI CTTAAG 1 cut(s) 632
BspTNI GGTCTC 1 cut(s) 139
BsrDI GCAATG 2 cut(s) 21, 57
BsrFI RCCGGY 1 cut(s) 536
BssAI RCCGGY 1 cut(s) 536
BssECI CCNNGG 3 cut(s) 149, 226, 334
BssMI GATC 2 cut(s) 265, 589
BssT1I CCWWGG 1 cut(s) 334
Bst4CI ACNGT 4 cut(s) 133, 167, 204, 290
BstAFI CTTAAG 1 cut(s) 632
BstC8I GCNNGC 2 cut(s) 43, 253
BstDEI CTNAG 4 cut(s) 59, 259, 457, 742
BstDSI CCRYGG 1 cut(s) 149
BstEII GGTNACC 1 cut(s) 446
BstF5I GGATG 2 cut(s) 71, 116
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 2 cut(s) 268, 592
BstMAI GTCTC 2 cut(s) 139, 266
BstMBI GATC 2 cut(s) 265, 589
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 3 cut(s) 11, 47, 488
BstPI GGTNACC 1 cut(s) 446
BstSCI CCNGG 3 cut(s) 226, 574, 793
BstSFI CTRYAG 1 cut(s) 526
BstSLI GKGCMC 2 cut(s) 162, 334
BstV1I GCAGC 1 cut(s) 156
BstV2I GAAGAC 1 cut(s) 615
BsuRI GGCC 7 cut(s) 45, 93, 160, 255, 320, 600, 734
BtgI CCRYGG 1 cut(s) 149
BtsCI GGATG 2 cut(s) 71, 116
BtsI GCAGTG 2 cut(s) 246, 522
BtsIMutI CAGTG 3 cut(s) 246, 427, 522
Cac8I GCNNGC 2 cut(s) 43, 253
CfoI GCGC 1 cut(s) 108
Cfr10I RCCGGY 1 cut(s) 536
Cfr13I GGNCC 6 cut(s) 158, 159, 182, 318, 542, 716
Csp6I GTAC 2 cut(s) 175, 692
CspCI CAANNNNNGTGG 2 cut(s) 769, 804
CviAII CATG 3 cut(s) 322, 464, 667
CviQI GTAC 2 cut(s) 175, 692
DdeI CTNAG 4 cut(s) 59, 259, 457, 742
DpnI GATC 2 cut(s) 267, 591
DpnII GATC 2 cut(s) 265, 589
EaeI YGGCCR 2 cut(s) 43, 732
Ecl136II GAGCTC 2 cut(s) 295, 646
Eco130I CCWWGG 1 cut(s) 334
Eco147I AGGCCT 1 cut(s) 600
Eco24I GRGCYC 3 cut(s) 162, 297, 648
Eco31I GGTCTC 1 cut(s) 139
Eco47I GGWCC 3 cut(s) 182, 542, 716
Eco53kI GAGCTC 2 cut(s) 295, 646
Eco88I CYCGRG 2 cut(s) 269, 451
Eco91I GGTNACC 1 cut(s) 446
EcoICRI GAGCTC 2 cut(s) 295, 646
EcoO65I GGTNACC 1 cut(s) 446
EcoRI GAATTC 1 cut(s) 221
EcoT14I CCWWGG 1 cut(s) 334
EcoT38I GRGCYC 3 cut(s) 162, 297, 648
ErhI CCWWGG 1 cut(s) 334
FaeI CATG 3 cut(s) 325, 467, 670
FaiI YATR 7 cut(s) 156, 237, 323, 465, 668, 677, 777
FaqI GGGAC 2 cut(s) 257, 729
FatI CATG 3 cut(s) 321, 463, 666
Fnu4HI GCNGC 1 cut(s) 145
FokI GGATG 2 cut(s) 58, 103
FriOI GRGCYC 3 cut(s) 162, 297, 648
Fsp4HI GCNGC 1 cut(s) 145
FspBI CTAG 3 cut(s) 38, 335, 434
FspI TGCGCA 1 cut(s) 107
GlaI GCGC 1 cut(s) 107
GluI GCNGC 1 cut(s) 145
HaeIII GGCC 7 cut(s) 45, 93, 160, 255, 320, 600, 734
HapII CCGG 7 cut(s) 192, 216, 228, 537, 575, 708, 795
HhaI GCGC 1 cut(s) 108
Hin1II CATG 3 cut(s) 325, 467, 670
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HinfI GANTC 2 cut(s) 96, 372
HpaII CCGG 7 cut(s) 192, 216, 228, 537, 575, 708, 795
HphI GGTGA 7 cut(s) 98, 205, 206, 242, 563, 568, 649
Hpy166II GTNNAC 2 cut(s) 431, 542
Hpy188III TCNNGA 4 cut(s) 269, 312, 505, 649
Hpy8I GTNNAC 2 cut(s) 431, 542
HpyAV CCTTC 4 cut(s) 42, 83, 515, 634
HpyCH4III ACNGT 4 cut(s) 133, 167, 204, 290
HpyCH4V TGCA 3 cut(s) 116, 515, 605
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 47, 488
HpyF3I CTNAG 4 cut(s) 59, 259, 457, 742
Hsp92II CATG 3 cut(s) 325, 467, 670
HspAI GCGC 1 cut(s) 106
Kzo9I GATC 2 cut(s) 265, 589
LmnI GCTCC 3 cut(s) 407, 628, 643
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 1 cut(s) 125
MaeI CTAG 3 cut(s) 38, 335, 434
MaeIII GTNAC 4 cut(s) 97, 230, 446, 703
MalI GATC 2 cut(s) 267, 591
MboI GATC 2 cut(s) 265, 589
MboII GAAGA 2 cut(s) 60, 620
MhlI GDGCHC 5 cut(s) 162, 297, 334, 412, 648
MlsI TGGCCA 1 cut(s) 45
MluCI AATT 4 cut(s) 221, 483, 531, 727
MluNI TGGCCA 1 cut(s) 45
MlyI GAGTC 2 cut(s) 105, 381
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 8 cut(s) 37, 190, 221, 266, 418, 547, 555, 610
Mox20I TGGCCA 1 cut(s) 45
MscI TGGCCA 1 cut(s) 45
MseI TTAA 3 cut(s) 81, 633, 756
Msp20I TGGCCA 1 cut(s) 45
MspCI CTTAAG 1 cut(s) 632
MspI CCGG 7 cut(s) 192, 216, 228, 537, 575, 708, 795
MspR9I CCNGG 3 cut(s) 228, 576, 795
MwoI GCNNNNNNNGC 3 cut(s) 11, 47, 488
NciI CCSGG 3 cut(s) 228, 576, 795
NdeII GATC 2 cut(s) 265, 589
NlaIII CATG 3 cut(s) 325, 467, 670
NlaIV GGNNCC 5 cut(s) 160, 183, 201, 331, 717
NmeAIII GCCGAG 1 cut(s) 119
NmuCI GTSAC 2 cut(s) 97, 230
NsbI TGCGCA 1 cut(s) 107
PceI AGGCCT 1 cut(s) 600
PcsI WCGNNNNNNNCGW 1 cut(s) 687
PflFI GACNNNGTC 1 cut(s) 167
PfoI TCCNGGA 1 cut(s) 793
PkrI GCNGC 1 cut(s) 146
PleI GAGTC 2 cut(s) 104, 380
PpsI GAGTC 2 cut(s) 104, 380
Psp124BI GAGCTC 2 cut(s) 297, 648
PspEI GGTNACC 1 cut(s) 446
PspN4I GGNNCC 5 cut(s) 160, 183, 201, 331, 717
PspOMI GGGCCC 1 cut(s) 158
PspPI GGNCC 6 cut(s) 158, 159, 182, 318, 542, 716
PsyI GACNNNGTC 1 cut(s) 167
RsaI GTAC 2 cut(s) 176, 693
RsaNI GTAC 2 cut(s) 175, 692
SacI GAGCTC 2 cut(s) 297, 648
SaqAI TTAA 3 cut(s) 81, 633, 756
SatI GCNGC 1 cut(s) 145
Sau3AI GATC 2 cut(s) 265, 589
Sau96I GGNCC 6 cut(s) 158, 159, 182, 318, 542, 716
ScaI AGTACT 1 cut(s) 176
SchI GAGTC 2 cut(s) 105, 381
ScrFI CCNGG 3 cut(s) 228, 576, 795
SduI GDGCHC 5 cut(s) 162, 297, 334, 412, 648
SfaNI GCATC 1 cut(s) 125
SfcI CTRYAG 1 cut(s) 526
SinI GGWCC 3 cut(s) 182, 542, 716
SmlI CTYRAG 2 cut(s) 632, 647
SmoI CTYRAG 2 cut(s) 632, 647
Sse9I AATT 4 cut(s) 221, 483, 531, 727
SseBI AGGCCT 1 cut(s) 600
SsiI CCGC 1 cut(s) 626
SspI AATATT 1 cut(s) 417
SspMI CTAG 3 cut(s) 38, 335, 434
SstI GAGCTC 2 cut(s) 297, 648
StuI AGGCCT 1 cut(s) 600
StyD4I CCNGG 3 cut(s) 226, 574, 793
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 4 cut(s) 133, 167, 204, 290
TaqI TCGA 2 cut(s) 297, 588
TaqII GACCGA 1 cut(s) 733
TasI AATT 4 cut(s) 221, 483, 531, 727
TatI WGTACW 1 cut(s) 174
Tru1I TTAA 3 cut(s) 81, 633, 756
Tru9I TTAA 3 cut(s) 81, 633, 756
TscAI CASTG 3 cut(s) 253, 427, 522
TseFI GTSAC 2 cut(s) 97, 230
TseI GCWGC 1 cut(s) 144
Tsp45I GTSAC 2 cut(s) 97, 230
TspDTI ATGAA 4 cut(s) 54, 60, 68, 452
TspRI CASTG 3 cut(s) 253, 427, 522
Tth111I GACNNNGTC 1 cut(s) 167
Vha464I CTTAAG 1 cut(s) 632
VpaK11BI GGWCC 3 cut(s) 182, 542, 716
XapI RAATTY 2 cut(s) 221, 727
XmaJI CCTAGG 1 cut(s) 334
XspI CTAG 3 cut(s) 38, 335, 434
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.