MD17G1281900.v1.1

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
34100469 .. 34101524
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1281900.v1.1.491

Sequence Viewer

Length: 999 bp
ATGCTTAAATCACTACATCACCATAAGAACCAATCAGGAAAGGGATCAAGATACACATGGATTCTGGATAGGATTCTGGATCTCACAGGACCCCCTATAAAAACAAAACCATCATATTCTGCATACTCAAATCATCAAACAATTTCATCAGCATCTCCTCTCTCTCTCTCTCTGTCTCTCAGCCTCTCTCTCTCATCCCCAATGGCAACTATGGCTCTCTCATCCCCATTCACTGGGAAGGCCATTCCTCTTAACACACAGACAGAGTTCTCAGCTGTCCAAGGAAATGGTAGGGTTTCTATGAGGAAGACGGGCAAAAAGCCTGCTGTCTCATCAGGGAGCCCCTGGTACGGCCCTGATCGTGTCAAGTACCTCGGACCATTCTCCGGTGAGGCTCCATCTTACCTAACCGGTGAATTCCCCGGTGACTACGGGTGGGATACTGCTGGGCTATCAGCAGACCCCGAAACCTTTGCCAAGAACCGTGAACTTGAAGTCATTCACTCAAGATGGGCAATGCTTGGTGCTTTGGGCTGTGTTTTCCCGGAGCTCCTCTCCAGGAACGGAGTCAAGTTTGGTGAAGCAGTGTGGTTCAAAGCCGGAGCTCAAATCTTCAGCGAAGGTGGCCTTGACTACCTTGGAAACCCAAGCCTGGTTCATGCACAGAGCATTCTAGCAATCTGGGCAACCCAGGTGGTCCTCATGGGTGCTGTTGAGGGTTACCGCATTGCCGGAGGACCCCTTGGTGAGATCACTGACCCACTGTACCCCGGAGGCAGCTTTGATCCTTTGGGACTTGCAGATGACCCAGAGGCATTTGCAGAGCTTAAGGTCAAAGAACTCAAGAATGGAAGACTTGCCATGTTCTCAATGTTCGGCTTCTTTGTGCAGGCCATTGTCACTGGAAAGGGCCCTATCGAGAACCTTGCCGATCATCTGGCTGATCCTGTTACCAACAATGCCTGGGCCTATGCCACCAACTTCGTGCCCGGGAAGTGA

Protein Analysis

333

Amino Acids

35.58

Weight (kDa)

7.06

Isoelectric Point (pI)

23.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 132 - 299 2.7e-50 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis pycom09g04690
rosa_chinensis RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 233
AciI CCGC 1 cut(s) 724
AclWI GGATC 4 cut(s) 52, 87, 779, 938
AcsI RAATTY 1 cut(s) 416
AcuI CTGAAG 1 cut(s) 598
AfaI GTAC 3 cut(s) 350, 371, 767
AfiI CCNNNNNNNGG 4 cut(s) 233, 350, 386, 652
AflII CTTAAG 1 cut(s) 827
AgeI ACCGGT 1 cut(s) 410
AgsI TTSAA 2 cut(s) 494, 595
AjnI CCWGG 5 cut(s) 344, 557, 651, 690, 962
AluBI AGCT 5 cut(s) 275, 550, 605, 780, 826
AluI AGCT 5 cut(s) 275, 550, 605, 780, 826
Alw21I GWGCWC 2 cut(s) 552, 607
Alw26I GTCTC 2 cut(s) 180, 334
AlwI GGATC 4 cut(s) 52, 87, 779, 938
Ama87I CYCGRG 1 cut(s) 989
AoxI GGCC 6 cut(s) 240, 352, 625, 891, 910, 966
ApaI GGGCCC 1 cut(s) 914
ApeKI GCWGC 1 cut(s) 777
ApoI RAATTY 1 cut(s) 416
AsiGI ACCGGT 1 cut(s) 410
Asp700I GAANNNNTTC 1 cut(s) 498
AspS9I GGNCC 8 cut(s) 89, 353, 377, 697, 737, 910, 911, 966
AsuC2I CCSGG 5 cut(s) 423, 545, 771, 990, 991
AsuHPI GGTGA 6 cut(s) 11, 401, 425, 437, 590, 758
AvaI CYCGRG 1 cut(s) 989
AvaII GGWCC 4 cut(s) 89, 377, 697, 737
BaeGI GKGCMC 2 cut(s) 914, 990
BanII GRGCYC 4 cut(s) 344, 552, 607, 914
BbsI GAAGAC 2 cut(s) 314, 859
Bbv12I GWGCWC 2 cut(s) 552, 607
BbvI GCAGC 1 cut(s) 789
BccI CCATC 3 cut(s) 118, 406, 504
BceAI ACGGC 1 cut(s) 367
BcgI CGANNNNNNTGC 4 cut(s) 455, 489, 908, 942
BciT130I CCWGG 5 cut(s) 346, 559, 653, 692, 964
BciVI GTATCC 1 cut(s) 433
BcnI CCSGG 5 cut(s) 423, 545, 771, 990, 991
BcoDI GTCTC 2 cut(s) 180, 334
BfaI CTAG 1 cut(s) 674
BfrI CTTAAG 1 cut(s) 827
BfuI GTATCC 1 cut(s) 433
BisI GCNGC 1 cut(s) 778
BlsI GCNGC 1 cut(s) 779
Bme18I GGWCC 4 cut(s) 89, 377, 697, 737
BmeT110I CYCGRG 1 cut(s) 989
BmgT120I GGNCC 8 cut(s) 89, 353, 377, 697, 737, 910, 911, 966
BmiI GGNNCC 5 cut(s) 91, 341, 396, 739, 912
BmrI ACTGGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 161
BmuI ACTGGG 1 cut(s) 243
BpiI GAAGAC 2 cut(s) 314, 859
BplI GAGNNNNNCTC 2 cut(s) 539, 571
BpmI CTGGAG 1 cut(s) 541
BpuEI CTTGAG 2 cut(s) 490, 827
BpuMI CCSGG 5 cut(s) 423, 545, 771, 990, 991
BsaWI WCCGGW 2 cut(s) 386, 410
Bsc4I CCNNNNNNNGG 4 cut(s) 233, 350, 386, 652
Bse118I RCCGGY 1 cut(s) 410
Bse1I ACTGG 2 cut(s) 238, 907
Bse3DI GCAATG 2 cut(s) 522, 726
BseBI CCWGG 5 cut(s) 346, 559, 653, 692, 964
BseGI GGATG 2 cut(s) 194, 221
BseLI CCNNNNNNNGG 4 cut(s) 233, 350, 386, 652
BseMI GCAATG 2 cut(s) 522, 726
BseMII CTCAG 2 cut(s) 193, 285
BseNI ACTGG 2 cut(s) 238, 907
BseRI GAGGAG 2 cut(s) 147, 542
BseSI GKGCMC 2 cut(s) 914, 990
BseXI GCAGC 1 cut(s) 789
BseYI CCCAGC 1 cut(s) 446
BsgI GTGCAG 1 cut(s) 908
BshFI GGCC 6 cut(s) 242, 354, 627, 893, 912, 968
BshTI ACCGGT 1 cut(s) 410
BsiHKAI GWGCWC 2 cut(s) 552, 607
BsiHKCI CYCGRG 1 cut(s) 989
BsiSI CCGG 8 cut(s) 387, 411, 423, 545, 600, 732, 771, 990
BslFI GGGAC 1 cut(s) 807
BslI CCNNNNNNNGG 4 cut(s) 233, 350, 386, 652
BsmAI GTCTC 2 cut(s) 180, 334
BsmFI GGGAC 1 cut(s) 807
BsmI GAATGC 1 cut(s) 669
BsnI GGCC 6 cut(s) 242, 354, 627, 893, 912, 968
BsoBI CYCGRG 1 cut(s) 989
Bsp120I GGGCCC 1 cut(s) 910
Bsp1286I GDGCHC 5 cut(s) 344, 552, 607, 914, 990
Bsp143I GATC 7 cut(s) 44, 79, 358, 750, 784, 931, 943
BspACI CCGC 1 cut(s) 724
BspANI GGCC 6 cut(s) 242, 354, 627, 893, 912, 968
BspCNI CTCAG 2 cut(s) 192, 284
BspLI GGNNCC 5 cut(s) 91, 341, 396, 739, 912
BspPI GGATC 4 cut(s) 52, 87, 779, 938
BspTI CTTAAG 1 cut(s) 827
BsrDI GCAATG 2 cut(s) 522, 726
BsrFI RCCGGY 1 cut(s) 410
BsrI ACTGG 2 cut(s) 238, 907
BssAI RCCGGY 1 cut(s) 410
BssMI GATC 7 cut(s) 44, 79, 358, 750, 784, 931, 943
BssT1I CCWWGG 3 cut(s) 280, 637, 742
Bst2UI CCWGG 5 cut(s) 346, 559, 653, 692, 964
Bst4CI ACNGT 2 cut(s) 485, 765
BstAFI CTTAAG 1 cut(s) 827
BstC8I GCNNGC 2 cut(s) 324, 891
BstDEI CTNAG 2 cut(s) 179, 271
BstEII GGTNACC 1 cut(s) 719
BstF5I GGATG 2 cut(s) 194, 221
BstKTI GATC 7 cut(s) 47, 82, 361, 753, 787, 934, 946
BstMAI GTCTC 2 cut(s) 180, 334
BstMBI GATC 7 cut(s) 44, 79, 358, 750, 784, 931, 943
BstMWI GCNNNNNNNGC 3 cut(s) 212, 624, 683
BstNI CCWGG 5 cut(s) 346, 559, 653, 692, 964
BstPI GGTNACC 1 cut(s) 719
BstSLI GKGCMC 2 cut(s) 914, 990
BstV1I GCAGC 1 cut(s) 789
BstV2I GAAGAC 2 cut(s) 314, 859
BstX2I RGATCY 1 cut(s) 79
BstXI CCANNNNNNTGG 1 cut(s) 287
BstYI RGATCY 1 cut(s) 79
BsuI GTATCC 1 cut(s) 433
BsuRI GGCC 6 cut(s) 242, 354, 627, 893, 912, 968
BtsCI GGATG 2 cut(s) 194, 221
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 5 cut(s) 231, 591, 753, 761, 900
Cac8I GCNNGC 2 cut(s) 324, 891
Cfr10I RCCGGY 1 cut(s) 410
Cfr13I GGNCC 8 cut(s) 89, 353, 377, 697, 737, 910, 911, 966
Cfr9I CCCGGG 1 cut(s) 989
Csp6I GTAC 3 cut(s) 349, 370, 766
CspAI ACCGGT 1 cut(s) 410
CspCI CAANNNNNGTGG 2 cut(s) 675, 710
CviAII CATG 4 cut(s) 57, 659, 703, 862
CviQI GTAC 3 cut(s) 349, 370, 766
DdeI CTNAG 2 cut(s) 179, 271
DpnI GATC 7 cut(s) 46, 81, 360, 752, 786, 933, 945
DpnII GATC 7 cut(s) 44, 79, 358, 750, 784, 931, 943
Ecl136II GAGCTC 2 cut(s) 550, 605
Eco130I CCWWGG 3 cut(s) 280, 637, 742
Eco24I GRGCYC 4 cut(s) 344, 552, 607, 914
Eco47I GGWCC 4 cut(s) 89, 377, 697, 737
Eco53kI GAGCTC 2 cut(s) 550, 605
Eco57I CTGAAG 1 cut(s) 598
Eco88I CYCGRG 1 cut(s) 989
Eco91I GGTNACC 1 cut(s) 719
EcoICRI GAGCTC 2 cut(s) 550, 605
EcoO109I RGGNCCY 4 cut(s) 89, 737, 910, 911
EcoO65I GGTNACC 1 cut(s) 719
EcoRI GAATTC 1 cut(s) 416
EcoRII CCWGG 5 cut(s) 344, 557, 651, 690, 962
EcoT14I CCWWGG 3 cut(s) 280, 637, 742
EcoT38I GRGCYC 4 cut(s) 344, 552, 607, 914
ErhI CCWWGG 3 cut(s) 280, 637, 742
FaeI CATG 4 cut(s) 60, 662, 706, 865
FalI AAGNNNNNCTT 2 cut(s) 612, 644
FaqI GGGAC 1 cut(s) 807
FatI CATG 4 cut(s) 56, 658, 702, 861
Fnu4HI GCNGC 1 cut(s) 778
FokI GGATG 2 cut(s) 181, 208
FriOI GRGCYC 4 cut(s) 344, 552, 607, 914
Fsp4HI GCNGC 1 cut(s) 778
FspBI CTAG 1 cut(s) 674
GluI GCNGC 1 cut(s) 778
GsaI CCCAGC 1 cut(s) 450
GsuI CTGGAG 1 cut(s) 541
HaeIII GGCC 6 cut(s) 242, 354, 627, 893, 912, 968
HapII CCGG 8 cut(s) 387, 411, 423, 545, 600, 732, 771, 990
Hin1II CATG 4 cut(s) 60, 662, 706, 865
HinfI GANTC 3 cut(s) 61, 73, 567
HpaII CCGG 8 cut(s) 387, 411, 423, 545, 600, 732, 771, 990
HphI GGTGA 6 cut(s) 11, 401, 425, 437, 590, 758
Hpy166II GTNNAC 1 cut(s) 488
Hpy188I TCNGA 1 cut(s) 377
Hpy188III TCNNGA 7 cut(s) 36, 48, 65, 77, 507, 844, 919
Hpy8I GTNNAC 1 cut(s) 488
HpyAV CCTTC 2 cut(s) 232, 614
HpyCH4III ACNGT 2 cut(s) 485, 765
HpyCH4V TGCA 5 cut(s) 122, 662, 800, 821, 889
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 624, 683
HpyF3I CTNAG 2 cut(s) 179, 271
Hsp92II CATG 4 cut(s) 60, 662, 706, 865
Kzo9I GATC 7 cut(s) 44, 79, 358, 750, 784, 931, 943
LmnI GCTCC 5 cut(s) 339, 400, 547, 555, 602
Lsp1109I GCAGC 1 cut(s) 789
LweI GCATC 1 cut(s) 161
MaeI CTAG 1 cut(s) 674
MaeIII GTNAC 4 cut(s) 425, 719, 898, 949
MalI GATC 7 cut(s) 46, 81, 360, 752, 786, 933, 945
MboI GATC 7 cut(s) 44, 79, 358, 750, 784, 931, 943
MboII GAAGA 3 cut(s) 319, 604, 864
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 5 cut(s) 344, 552, 607, 914, 990
MluCI AATT 2 cut(s) 141, 416
MlyI GAGTC 1 cut(s) 576
MroXI GAANNNNTTC 1 cut(s) 498
MseI TTAA 3 cut(s) 6, 252, 828
MspA1I CMGCKG 1 cut(s) 275
MspCI CTTAAG 1 cut(s) 827
MspI CCGG 8 cut(s) 387, 411, 423, 545, 600, 732, 771, 990
Mva1269I GAATGC 1 cut(s) 669
MvaI CCWGG 5 cut(s) 346, 559, 653, 692, 964
MwoI GCNNNNNNNGC 3 cut(s) 212, 624, 683
NciI CCSGG 5 cut(s) 423, 545, 771, 990, 991
NdeII GATC 7 cut(s) 44, 79, 358, 750, 784, 931, 943
NlaIII CATG 4 cut(s) 60, 662, 706, 865
NlaIV GGNNCC 5 cut(s) 91, 341, 396, 739, 912
NmuCI GTSAC 2 cut(s) 425, 898
PctI GAATGC 1 cut(s) 669
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 2 cut(s) 61, 73
PflMI CCANNNNNTGG 1 cut(s) 233
PfoI TCCNGGA 2 cut(s) 543, 557
PinAI ACCGGT 1 cut(s) 410
PkrI GCNGC 1 cut(s) 779
PleI GAGTC 1 cut(s) 575
PpsI GAGTC 1 cut(s) 575
PpuMI RGGWCCY 2 cut(s) 89, 737
Psp124BI GAGCTC 2 cut(s) 552, 607
Psp5II RGGWCCY 2 cut(s) 89, 737
Psp6I CCWGG 5 cut(s) 344, 557, 651, 690, 962
PspEI GGTNACC 1 cut(s) 719
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 5 cut(s) 344, 557, 651, 690, 962
PspN4I GGNNCC 5 cut(s) 91, 341, 396, 739, 912
PspOMI GGGCCC 1 cut(s) 910
PspPI GGNCC 8 cut(s) 89, 353, 377, 697, 737, 910, 911, 966
PspPPI RGGWCCY 2 cut(s) 89, 737
PsuI RGATCY 1 cut(s) 79
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 3 cut(s) 350, 371, 767
RsaNI GTAC 3 cut(s) 349, 370, 766
SacI GAGCTC 2 cut(s) 552, 607
SaqAI TTAA 3 cut(s) 6, 252, 828
SatI GCNGC 1 cut(s) 778
Sau3AI GATC 7 cut(s) 44, 79, 358, 750, 784, 931, 943
Sau96I GGNCC 8 cut(s) 89, 353, 377, 697, 737, 910, 911, 966
SchI GAGTC 1 cut(s) 576
SduI GDGCHC 5 cut(s) 344, 552, 607, 914, 990
SfaNI GCATC 1 cut(s) 161
SinI GGWCC 4 cut(s) 89, 377, 697, 737
SmaI CCCGGG 1 cut(s) 991
SmlI CTYRAG 3 cut(s) 505, 827, 842
SmoI CTYRAG 3 cut(s) 505, 827, 842
Sse9I AATT 2 cut(s) 141, 416
SsiI CCGC 1 cut(s) 724
SspMI CTAG 1 cut(s) 674
SstI GAGCTC 2 cut(s) 552, 607
StyI CCWWGG 3 cut(s) 280, 637, 742
TaaI ACNGT 2 cut(s) 485, 765
TaqI TCGA 1 cut(s) 918
TasI AATT 2 cut(s) 141, 416
TfiI GAWTC 2 cut(s) 61, 73
Tru1I TTAA 3 cut(s) 6, 252, 828
Tru9I TTAA 3 cut(s) 6, 252, 828
TscAI CASTG 5 cut(s) 238, 591, 760, 768, 907
TseFI GTSAC 2 cut(s) 425, 898
TseI GCWGC 1 cut(s) 777
Tsp45I GTSAC 2 cut(s) 425, 898
TspDTI ATGAA 2 cut(s) 135, 647
TspGWI ACGGA 1 cut(s) 579
TspMI CCCGGG 1 cut(s) 989
TspRI CASTG 5 cut(s) 238, 591, 760, 768, 907
Van91I CCANNNNNTGG 1 cut(s) 233
Vha464I CTTAAG 1 cut(s) 827
VpaK11BI GGWCC 4 cut(s) 89, 377, 697, 737
XapI RAATTY 1 cut(s) 416
XmaI CCCGGG 1 cut(s) 989
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.