Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Reverse (-)

73932031 .. 73932573

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34355

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAGGGCCCGAGTCACCATGCGCAAAACCGCAGCCAAGTCCAAAACTGTATCAACTGGCAGCCCATGGTACGGTCCAGACCGTGTCAAGTACTTGGGCCCATTCTCCTGTGAGGCTCCATCATACCTCACCGGAGAGTTTTCCGGAGACTACGGTTGGGACGCTGCTACGGATCCCGAGACCTTTGCCAAAAACCGTGAGCTTGAGGTCATCCATTCCAGGTGGGCCATGCTCGGAGCCTTGGGCTGTGTTTTCCCCGAACTTCTAGCCCGCAATGGATTCAAGTTTGGCGAAGCTGTTTGGTTCAAGCCCAGAGACCAGATATTCAGTGAGGGTGGGCTAGTTTACTTGGGAAACCCGAGCTTAGTCCATGCACAGAGCATTTTGGCAATCGGTGGGCCTCTCGGTGAGGTGGTAGACCCATTGTACCCTGGTGGGAGTTTTGACCCCTTAGTCCTCACAGAAGATCCAGAAGCTTTTGCTGAGCTCAAGGTAAAGGAGCTCAAGAATGGAAGGCTAGCAATGTTTTCCATGTTTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

180

Amino Acids

19.72

Weight (kDa)

5.75

Isoelectric Point (pI)

24.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	39 - 180	5.2e-34	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	452
Acc16I	TGCGCA	1 cut(s)	23
AccI	GTMKAC	1 cut(s)	417
AccIII	TCCGGA	1 cut(s)	143
AciI	CCGC	2 cut(s)	30, 271
AclWI	GGATC	3 cut(s)	167, 180, 461
AfaI	GTAC	3 cut(s)	71, 92, 428
AfiI	CCNNNNNNNGG	2 cut(s)	71, 537
AgsI	TTSAA	2 cut(s)	283, 307
AjnI	CCWGG	2 cut(s)	218, 430
AluBI	AGCT	6 cut(s)	202, 296, 363, 476, 487, 502
AluI	AGCT	6 cut(s)	202, 296, 363, 476, 487, 502
Alw21I	GWGCWC	2 cut(s)	489, 504
Alw26I	GTCTC	3 cut(s)	141, 173, 309
AlwI	GGATC	3 cut(s)	167, 180, 461
Ama87I	CYCGRG	3 cut(s)	9, 176, 358
Aor13HI	TCCGGA	1 cut(s)	143
AoxI	GGCC	4 cut(s)	6, 97, 225, 398
ApaI	GGGCCC	2 cut(s)	10, 101
ApeKI	GCWGC	3 cut(s)	32, 60, 164
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	7 cut(s)	6, 7, 74, 97, 98, 225, 398
AsuHPI	GGTGA	3 cut(s)	7, 121, 419
AsuNHI	GCTAGC	1 cut(s)	517
AvaI	CYCGRG	3 cut(s)	9, 176, 358
AvaII	GGWCC	1 cut(s)	74
BaeGI	GKGCMC	2 cut(s)	10, 101
BamHI	GGATCC	1 cut(s)	172
BanII	GRGCYC	4 cut(s)	10, 101, 489, 504
Bbv12I	GWGCWC	2 cut(s)	489, 504
BbvI	GCAGC	3 cut(s)	44, 72, 151
BccI	CCATC	1 cut(s)	127
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BciT130I	CCWGG	2 cut(s)	220, 432
BcoDI	GTCTC	3 cut(s)	141, 173, 309
BfaI	CTAG	3 cut(s)	266, 341, 518
BisI	GCNGC	3 cut(s)	33, 61, 165
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	3 cut(s)	34, 62, 166
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	2 cut(s)	220, 432
Bme18I	GGWCC	1 cut(s)	74
BmeT110I	CYCGRG	3 cut(s)	9, 176, 358
BmgT120I	GGNCC	7 cut(s)	6, 7, 74, 97, 98, 225, 398
BmiI	GGNNCC	5 cut(s)	8, 99, 117, 174, 238
BmrFI	CCNGG	2 cut(s)	220, 432
BmtI	GCTAGC	1 cut(s)	521
Bpu1102I	GCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	3 cut(s)	224, 473, 488
BsaI	GGTCTC	2 cut(s)	173, 309
BsaJI	CCNNGG	3 cut(s)	65, 240, 430
BsaWI	WCCGGW	2 cut(s)	131, 143
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 537
Bse1I	ACTGG	1 cut(s)	61
Bse3DI	GCAATG	2 cut(s)	280, 528
BseAI	TCCGGA	1 cut(s)	143
BseBI	CCWGG	2 cut(s)	220, 432
BseDI	CCNNGG	3 cut(s)	65, 240, 430
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	71, 537
BseMI	GCAATG	2 cut(s)	280, 528
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	1 cut(s)	61
BseSI	GKGCMC	2 cut(s)	10, 101
BseXI	GCAGC	3 cut(s)	44, 72, 151
BshFI	GGCC	4 cut(s)	8, 99, 227, 400
BsiHKAI	GWGCWC	2 cut(s)	489, 504
BsiHKCI	CYCGRG	3 cut(s)	9, 176, 358
BsiSI	CCGG	2 cut(s)	132, 144
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	2 cut(s)	71, 537
BsmAI	GTCTC	3 cut(s)	141, 173, 309
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	4 cut(s)	8, 99, 227, 400
Bso31I	GGTCTC	2 cut(s)	173, 309
BsoBI	CYCGRG	3 cut(s)	9, 176, 358
Bsp120I	GGGCCC	2 cut(s)	6, 97
Bsp1286I	GDGCHC	4 cut(s)	10, 101, 489, 504
Bsp13I	TCCGGA	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	172, 466
Bsp1720I	GCTNAGC	1 cut(s)	483
Bsp19I	CCATGG	1 cut(s)	65
BspACI	CCGC	2 cut(s)	30, 271
BspANI	GGCC	4 cut(s)	8, 99, 227, 400
BspCNI	CTCAG	1 cut(s)	475
BspEI	TCCGGA	1 cut(s)	143
BspLI	GGNNCC	5 cut(s)	8, 99, 117, 174, 238
BspOI	GCTAGC	1 cut(s)	521
BspPI	GGATC	3 cut(s)	167, 180, 461
BspTNI	GGTCTC	2 cut(s)	173, 309
BsrDI	GCAATG	2 cut(s)	280, 528
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	3 cut(s)	65, 240, 430
BssMI	GATC	2 cut(s)	172, 466
BssT1I	CCWWGG	2 cut(s)	65, 240
Bst2UI	CCWGG	2 cut(s)	220, 432
Bst4CI	ACNGT	5 cut(s)	49, 74, 83, 155, 197
BstC8I	GCNNGC	2 cut(s)	271, 519
BstDEI	CTNAG	3 cut(s)	364, 451, 483
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	2 cut(s)	175, 469
BstMAI	GTCTC	3 cut(s)	141, 173, 309
BstMBI	GATC	2 cut(s)	172, 466
BstNI	CCWGG	2 cut(s)	220, 432
BstSCI	CCNGG	2 cut(s)	218, 430
BstSLI	GKGCMC	2 cut(s)	10, 101
BstV1I	GCAGC	3 cut(s)	44, 72, 151
BstX2I	RGATCY	2 cut(s)	172, 466
BstYI	RGATCY	2 cut(s)	172, 466
BsuRI	GGCC	4 cut(s)	8, 99, 227, 400
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	334
Cac8I	GCNNGC	2 cut(s)	271, 519
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	7 cut(s)	6, 7, 74, 97, 98, 225, 398
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	3 cut(s)	70, 91, 427
CviAII	CATG	5 cut(s)	19, 66, 229, 371, 532
CviQI	GTAC	3 cut(s)	70, 91, 427
DdeI	CTNAG	3 cut(s)	364, 451, 483
DpnI	GATC	2 cut(s)	174, 468
DpnII	GATC	2 cut(s)	172, 466
DrdI	GACNNNNNNGTC	1 cut(s)	452
DseDI	GACNNNNNNGTC	1 cut(s)	452
Ecl136II	GAGCTC	2 cut(s)	487, 502
Eco130I	CCWWGG	2 cut(s)	65, 240
Eco24I	GRGCYC	4 cut(s)	10, 101, 489, 504
Eco31I	GGTCTC	2 cut(s)	173, 309
Eco47I	GGWCC	1 cut(s)	74
Eco53kI	GAGCTC	2 cut(s)	487, 502
Eco88I	CYCGRG	3 cut(s)	9, 176, 358
EcoICRI	GAGCTC	2 cut(s)	487, 502
EcoO109I	RGGNCCY	1 cut(s)	6
EcoRII	CCWGG	2 cut(s)	218, 430
EcoT14I	CCWWGG	2 cut(s)	65, 240
EcoT38I	GRGCYC	4 cut(s)	10, 101, 489, 504
ErhI	CCWWGG	2 cut(s)	65, 240
FaeI	CATG	5 cut(s)	22, 69, 232, 374, 535
FaiI	YATR	6 cut(s)	20, 67, 124, 230, 372, 533
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	5 cut(s)	18, 65, 228, 370, 531
FauI	CCCGC	1 cut(s)	278
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	3 cut(s)	33, 61, 165
FokI	GGATG	1 cut(s)	197
FriOI	GRGCYC	4 cut(s)	10, 101, 489, 504
Fsp4HI	GCNGC	3 cut(s)	33, 61, 165
FspBI	CTAG	3 cut(s)	266, 341, 518
FspI	TGCGCA	1 cut(s)	23
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	3 cut(s)	33, 61, 165
HaeIII	GGCC	4 cut(s)	8, 99, 227, 400
HapII	CCGG	2 cut(s)	132, 144
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	5 cut(s)	22, 69, 232, 374, 535
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	474
HinfI	GANTC	2 cut(s)	12, 279
HpaII	CCGG	2 cut(s)	132, 144
HphI	GGTGA	3 cut(s)	7, 121, 419
Hpy166II	GTNNAC	2 cut(s)	346, 418
Hpy188I	TCNGA	1 cut(s)	236
Hpy188III	TCNNGA	5 cut(s)	77, 144, 176, 470, 505
Hpy8I	GTNNAC	2 cut(s)	346, 418
HpyAV	CCTTC	1 cut(s)	507
HpyCH4III	ACNGT	5 cut(s)	49, 74, 83, 155, 197
HpyCH4V	TGCA	1 cut(s)	374
HpyF3I	CTNAG	3 cut(s)	364, 451, 483
Hsp92II	CATG	5 cut(s)	22, 69, 232, 374, 535
HspAI	GCGC	1 cut(s)	22
Kpn2I	TCCGGA	1 cut(s)	143
Kzo9I	GATC	2 cut(s)	172, 466
LmnI	GCTCC	3 cut(s)	121, 236, 499
Lsp1109I	GCAGC	3 cut(s)	44, 72, 151
MaeI	CTAG	3 cut(s)	266, 341, 518
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	2 cut(s)	174, 468
MboI	GATC	2 cut(s)	172, 466
MboII	GAAGA	1 cut(s)	476
MflI	RGATCY	2 cut(s)	172, 466
MhlI	GDGCHC	4 cut(s)	10, 101, 489, 504
MlyI	GAGTC	1 cut(s)	21
MnlI	CCTC	7 cut(s)	106, 137, 199, 325, 403, 411, 467
MroI	TCCGGA	1 cut(s)	143
MspI	CCGG	2 cut(s)	132, 144
MspR9I	CCNGG	2 cut(s)	220, 432
MvaI	CCWGG	2 cut(s)	220, 432
NcoI	CCATGG	1 cut(s)	65
NdeII	GATC	2 cut(s)	172, 466
NheI	GCTAGC	1 cut(s)	517
NlaIII	CATG	5 cut(s)	22, 69, 232, 374, 535
NlaIV	GGNNCC	5 cut(s)	8, 99, 117, 174, 238
NmuCI	GTSAC	1 cut(s)	13
NsbI	TGCGCA	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	279
PflFI	GACNNNGTC	1 cut(s)	83
PkrI	GCNGC	3 cut(s)	34, 62, 166
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
Psp124BI	GAGCTC	2 cut(s)	489, 504
Psp6I	CCWGG	2 cut(s)	218, 430
PspGI	CCWGG	2 cut(s)	218, 430
PspN4I	GGNNCC	5 cut(s)	8, 99, 117, 174, 238
PspOMI	GGGCCC	2 cut(s)	6, 97
PspPI	GGNCC	7 cut(s)	6, 7, 74, 97, 98, 225, 398
PsuI	RGATCY	2 cut(s)	172, 466
PsyI	GACNNNGTC	1 cut(s)	83
RsaI	GTAC	3 cut(s)	71, 92, 428
RsaNI	GTAC	3 cut(s)	70, 91, 427
SacI	GAGCTC	2 cut(s)	489, 504
SatI	GCNGC	3 cut(s)	33, 61, 165
Sau3AI	GATC	2 cut(s)	172, 466
Sau96I	GGNCC	7 cut(s)	6, 7, 74, 97, 98, 225, 398
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	1 cut(s)	21
ScrFI	CCNGG	2 cut(s)	220, 432
SduI	GDGCHC	4 cut(s)	10, 101, 489, 504
SinI	GGWCC	1 cut(s)	74
SmlI	CTYRAG	3 cut(s)	203, 488, 503
SmoI	CTYRAG	3 cut(s)	203, 488, 503
SsiI	CCGC	2 cut(s)	30, 271
SspMI	CTAG	3 cut(s)	266, 341, 518
SstI	GAGCTC	2 cut(s)	489, 504
StyD4I	CCNGG	2 cut(s)	218, 430
StyI	CCWWGG	2 cut(s)	65, 240
TaaI	ACNGT	5 cut(s)	49, 74, 83, 155, 197
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	279
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	3 cut(s)	32, 60, 164
Tsp45I	GTSAC	1 cut(s)	13
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	1 cut(s)	334
Tth111I	GACNNNGTC	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	417
XspI	CTAG	3 cut(s)	266, 341, 518
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.