Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Reverse (-)

75296270 .. 75296788

Gene Structure 519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG476700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTTTGCCAAAAATCGTGAGCTTGAGGTCATCCATTCCAGATGGGCAATGCTCGGCGCCTTGGGCTGTGTTTTCCCTGAACTCCTAGCCCGCAATGGAGTCAAGTTTGGCGAAGCTGTTTGGTTCAAGGCCAGAGCCCAGATATTCAGTGAGGGTGGGCTAGATTACTTGGGAAACCCAAGCTTAGTCCATGCCCAAAGCATTTTGGCAATCTGGGCAACACAAGTTATCTTAATGGGCGCGGTTGAAGGCTATAGAGTTGCTGGTGGGCCTCTCGGTGAGGTGGTAGACCCATTGTACCCTGGCGGGAGTTTTGACCCCTTAGGCCTTGCAGAAGATCCAGAAGCTTTTGCTGAGCTAAAGGTAAAGGAGCTCAAGAATGGAAGATTAGCTATGTTTTCCATGTTCGGGTTTTTTGTACAAGCCATTGTTAACGGAAAGGGACCGATCGAGAACCTGGCTGACCCTGTTGACAACAATGCTTGGTCATATGCCACCAACTTTGTTCCCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

172

Amino Acids

18.62

Weight (kDa)

5.19

Isoelectric Point (pI)

18.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	2 - 143	5.2e-38	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	56
AccI	GTMKAC	1 cut(s)	288
AccII	CGCG	1 cut(s)	242
AciI	CCGC	3 cut(s)	91, 242, 306
AclWI	GGATC	1 cut(s)	332
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	2 cut(s)	299, 420
AfiI	CCNNNNNNNGG	1 cut(s)	408
AgsI	TTSAA	2 cut(s)	127, 248
AjnI	CCWGG	2 cut(s)	301, 456
AluBI	AGCT	7 cut(s)	22, 116, 183, 347, 358, 373, 392
AluI	AGCT	7 cut(s)	22, 116, 183, 347, 358, 373, 392
Alw21I	GWGCWC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	332
AoxI	GGCC	3 cut(s)	129, 269, 325
AspLEI	GCGC	2 cut(s)	59, 242
AspS9I	GGNCC	2 cut(s)	269, 443
AsuC2I	CCSGG	1 cut(s)	510
AsuHPI	GGTGA	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	443
AxyI	CCTNAGG	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	2 cut(s)	139, 375
Bbv12I	GWGCWC	1 cut(s)	375
BccI	CCATC	1 cut(s)	36
BciT130I	CCWGG	2 cut(s)	303, 458
BcnI	CCSGG	1 cut(s)	510
BfaI	CTAG	2 cut(s)	86, 161
BfmI	CTRYAG	1 cut(s)	253
BfoI	RGCGCY	1 cut(s)	60
BlpI	GCTNAGC	1 cut(s)	354
Bme1390I	CCNGG	3 cut(s)	303, 458, 510
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	2 cut(s)	269, 443
BmiI	GGNNCC	2 cut(s)	58, 444
BmrFI	CCNGG	3 cut(s)	303, 458, 510
Bpu1102I	GCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	2 cut(s)	44, 359
BpuMI	CCSGG	1 cut(s)	510
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	60, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse21I	CCTNAGG	1 cut(s)	322
Bse3DI	GCAATG	2 cut(s)	54, 100
BseBI	CCWGG	2 cut(s)	303, 458
BseDI	CCNNGG	2 cut(s)	60, 301
BseGI	GGATG	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMI	GCAATG	2 cut(s)	54, 100
BseMII	CTCAG	1 cut(s)	345
Bsh1236I	CGCG	1 cut(s)	242
Bsh1285I	CGRYCG	1 cut(s)	450
BshFI	GGCC	3 cut(s)	131, 271, 327
BshNI	GGYRCC	1 cut(s)	56
BsiEI	CGRYCG	1 cut(s)	450
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	510
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmFI	GGGAC	1 cut(s)	456
BsnI	GGCC	3 cut(s)	131, 271, 327
Bsp1286I	GDGCHC	2 cut(s)	139, 375
Bsp1407I	TGTACA	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	337, 447
Bsp1720I	GCTNAGC	1 cut(s)	354
BspACI	CCGC	3 cut(s)	91, 242, 306
BspANI	GGCC	3 cut(s)	131, 271, 327
BspCNI	CTCAG	1 cut(s)	346
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	2 cut(s)	58, 444
BspPI	GGATC	1 cut(s)	332
BspT107I	GGYRCC	1 cut(s)	56
BsrDI	GCAATG	2 cut(s)	54, 100
BsrGI	TGTACA	1 cut(s)	418
BssECI	CCNNGG	2 cut(s)	60, 301
BssMI	GATC	2 cut(s)	337, 447
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	2 cut(s)	303, 458
BstACI	GRCGYC	1 cut(s)	57
BstAUI	TGTACA	1 cut(s)	418
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	3 cut(s)	184, 322, 354
BstF5I	GGATG	1 cut(s)	30
BstFNI	CGCG	1 cut(s)	242
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	59, 242
BstKTI	GATC	2 cut(s)	340, 450
BstMBI	GATC	2 cut(s)	337, 447
BstMCI	CGRYCG	1 cut(s)	450
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 215
BstNI	CCWGG	2 cut(s)	303, 458
BstSCI	CCNGG	3 cut(s)	301, 456, 508
BstSFI	CTRYAG	1 cut(s)	253
BstUI	CGCG	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
Bsu36I	CCTNAGG	1 cut(s)	322
BsuRI	GGCC	3 cut(s)	131, 271, 327
BtsCI	GGATG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	154
Cac8I	GCNNGC	1 cut(s)	91
CfoI	GCGC	2 cut(s)	59, 242
Cfr13I	GGNCC	2 cut(s)	269, 443
Csp6I	GTAC	2 cut(s)	298, 419
CspCI	CAANNNNNGTGG	2 cut(s)	484, 519
CviAII	CATG	2 cut(s)	191, 403
CviQI	GTAC	2 cut(s)	298, 419
DdeI	CTNAG	3 cut(s)	184, 322, 354
DinI	GGCGCC	1 cut(s)	58
DpnI	GATC	2 cut(s)	339, 449
DpnII	GATC	2 cut(s)	337, 447
Ecl136II	GAGCTC	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	60
Eco147I	AGGCCT	1 cut(s)	327
Eco24I	GRGCYC	2 cut(s)	139, 375
Eco47I	GGWCC	1 cut(s)	443
Eco53kI	GAGCTC	1 cut(s)	373
Eco81I	CCTNAGG	1 cut(s)	322
EcoICRI	GAGCTC	1 cut(s)	373
EcoRII	CCWGG	2 cut(s)	301, 456
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	2 cut(s)	139, 375
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	2 cut(s)	194, 406
FaiI	YATR	6 cut(s)	192, 255, 395, 404, 490, 492
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	2 cut(s)	190, 402
FauI	CCCGC	2 cut(s)	98, 299
FauNDI	CATATG	1 cut(s)	490
FblI	GTMKAC	1 cut(s)	288
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	2 cut(s)	139, 375
FspBI	CTAG	2 cut(s)	86, 161
GlaI	GCGC	2 cut(s)	58, 241
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	3 cut(s)	131, 271, 327
HapII	CCGG	1 cut(s)	510
HhaI	GCGC	2 cut(s)	59, 242
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	2 cut(s)	194, 406
Hin6I	GCGC	2 cut(s)	57, 240
HinP1I	GCGC	2 cut(s)	57, 240
HincII	GTYRAC	2 cut(s)	433, 472
HindII	GTYRAC	2 cut(s)	433, 472
HindIII	AAGCTT	2 cut(s)	181, 345
HinfI	GANTC	1 cut(s)	99
HpaI	GTTAAC	1 cut(s)	433
HpaII	CCGG	1 cut(s)	510
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	3 cut(s)	289, 433, 472
Hpy188III	TCNNGA	5 cut(s)	17, 39, 341, 376, 451
Hpy8I	GTNNAC	3 cut(s)	289, 433, 472
HpyAV	CCTTC	1 cut(s)	242
HpyCH4V	TGCA	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 215
HpyF3I	CTNAG	3 cut(s)	184, 322, 354
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	194, 406
HspAI	GCGC	2 cut(s)	57, 240
KasI	GGCGCC	1 cut(s)	56
KspAI	GTTAAC	1 cut(s)	433
Kzo9I	GATC	2 cut(s)	337, 447
LmnI	GCTCC	1 cut(s)	370
MaeI	CTAG	2 cut(s)	86, 161
MalI	GATC	2 cut(s)	339, 449
MboI	GATC	2 cut(s)	337, 447
MboII	GAAGA	2 cut(s)	347, 396
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	2 cut(s)	139, 375
Mly113I	GGCGCC	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	108
MnlI	CCTC	4 cut(s)	19, 145, 274, 282
MseI	TTAA	2 cut(s)	233, 432
MspI	CCGG	1 cut(s)	510
MspR9I	CCNGG	3 cut(s)	303, 458, 510
MvaI	CCWGG	2 cut(s)	303, 458
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	2 cut(s)	63, 215
NarI	GGCGCC	1 cut(s)	57
NciI	CCSGG	1 cut(s)	510
NdeI	CATATG	1 cut(s)	490
NdeII	GATC	2 cut(s)	337, 447
NlaIII	CATG	2 cut(s)	194, 406
NlaIV	GGNNCC	2 cut(s)	58, 444
NmeAIII	GCCGAG	1 cut(s)	33
PceI	AGGCCT	1 cut(s)	327
PfoI	TCCNGGA	1 cut(s)	508
Ple19I	CGATCG	1 cut(s)	450
PleI	GAGTC	1 cut(s)	107
PluTI	GGCGCC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	107
Psp124BI	GAGCTC	1 cut(s)	375
Psp6I	CCWGG	2 cut(s)	301, 456
PspGI	CCWGG	2 cut(s)	301, 456
PspN4I	GGNNCC	2 cut(s)	58, 444
PspPI	GGNCC	2 cut(s)	269, 443
PsuI	RGATCY	1 cut(s)	337
PvuI	CGATCG	1 cut(s)	450
RsaI	GTAC	2 cut(s)	299, 420
RsaNI	GTAC	2 cut(s)	298, 419
SacI	GAGCTC	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	233, 432
Sau3AI	GATC	2 cut(s)	337, 447
Sau96I	GGNCC	2 cut(s)	269, 443
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	3 cut(s)	303, 458, 510
SduI	GDGCHC	2 cut(s)	139, 375
SfcI	CTRYAG	1 cut(s)	253
SfoI	GGCGCC	1 cut(s)	58
SinI	GGWCC	1 cut(s)	443
SmlI	CTYRAG	2 cut(s)	23, 374
SmoI	CTYRAG	2 cut(s)	23, 374
SseBI	AGGCCT	1 cut(s)	327
SsiI	CCGC	3 cut(s)	91, 242, 306
SspDI	GGCGCC	1 cut(s)	56
SspMI	CTAG	2 cut(s)	86, 161
SstI	GAGCTC	1 cut(s)	375
StuI	AGGCCT	1 cut(s)	327
StyD4I	CCNGG	3 cut(s)	301, 456, 508
StyI	CCWWGG	1 cut(s)	60
TaqI	TCGA	1 cut(s)	450
TaqII	GACCGA	1 cut(s)	460
TatI	WGTACW	1 cut(s)	418
Tru1I	TTAA	2 cut(s)	233, 432
Tru9I	TTAA	2 cut(s)	233, 432
TscAI	CASTG	1 cut(s)	154
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	443
XmiI	GTMKAC	1 cut(s)	288
XspI	CTAG	2 cut(s)	86, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.