Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Forward (+)

61657322 .. 61657767

Gene Structure 446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG415500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGGTGCAGTGGAAGGCTACAGAATTGCCGGTGGACCTCTCGATGAGGTGATAGACCCACTTTATCCGGGTGGGAGTTTCGATCCATTAGGCCTTGCAGAAGACCCAGAGGCTTTTGCCGAGCTTAAGGTGAAGGAGCTCAAGAATGGGAGATTAGCCATGTTTTCAATGTTCGGGTTTTTCGTACAAGCCATTGTTACCGGAAAGGGACCGATAGAGAATTTGGCCGACCACTTAGCCGACCCTGTTAACAACAATGCTTGGTCTTATGCCACCAACTTTGTTCCCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

98

Amino Acids

10.49

Weight (kDa)

4.49

Isoelectric Point (pI)

11.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	1 - 65	1e-18	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	77
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	220
AfaI	GTAC	1 cut(s)	186
AflII	CTTAAG	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	168
AluBI	AGCT	2 cut(s)	124, 139
AluI	AGCT	2 cut(s)	124, 139
Alw21I	GWGCWC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	77
AoxI	GGCC	2 cut(s)	91, 225
ApoI	RAATTY	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	35, 209
AsuC2I	CCSGG	2 cut(s)	69, 288
AsuHPI	GGTGA	2 cut(s)	61, 142
AvaII	GGWCC	2 cut(s)	35, 209
BanII	GRGCYC	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	141
BcnI	CCSGG	2 cut(s)	69, 288
BfmI	CTRYAG	1 cut(s)	19
BfrI	CTTAAG	1 cut(s)	125
Bme1390I	CCNGG	2 cut(s)	69, 288
Bme18I	GGWCC	2 cut(s)	35, 209
BmgT120I	GGNCC	2 cut(s)	35, 209
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	2 cut(s)	69, 288
BpiI	GAAGAC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	125
BpuMI	CCSGG	2 cut(s)	69, 288
BsaWI	WCCGGW	1 cut(s)	200
Bse118I	RCCGGY	1 cut(s)	29
BsgI	GTGCAG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	93, 227
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	4 cut(s)	30, 68, 201, 288
BslFI	GGGAC	1 cut(s)	222
BsmFI	GGGAC	1 cut(s)	222
BsnI	GGCC	2 cut(s)	93, 227
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	82
BspANI	GGCC	2 cut(s)	93, 227
BspLI	GGNNCC	1 cut(s)	210
BspPI	GGATC	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	29
BssAI	RCCGGY	1 cut(s)	29
BssMI	GATC	1 cut(s)	82
BstAFI	CTTAAG	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	235
BstKTI	GATC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	82
BstSCI	CCNGG	2 cut(s)	67, 286
BstSFI	CTRYAG	1 cut(s)	19
BstV2I	GAAGAC	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	93, 227
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	15
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	2 cut(s)	35, 209
Csp6I	GTAC	1 cut(s)	185
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	9 cut(s)	18, 93, 113, 124, 139, 158, 191, 227, 239
CviKI_1	RGCY	9 cut(s)	18, 93, 113, 124, 139, 158, 191, 227, 239
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	1 cut(s)	235
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
EaeI	YGGCCR	1 cut(s)	225
Ecl136II	GAGCTC	1 cut(s)	139
Eco147I	AGGCCT	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	35, 209
Eco53kI	GAGCTC	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	141
FaeI	CATG	1 cut(s)	163
FaiI	YATR	2 cut(s)	161, 270
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	1 cut(s)	159
FriOI	GRGCYC	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	93, 227
HapII	CCGG	4 cut(s)	30, 68, 201, 288
Hin1II	CATG	1 cut(s)	163
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HpaI	GTTAAC	1 cut(s)	250
HpaII	CCGG	4 cut(s)	30, 68, 201, 288
HphI	GGTGA	2 cut(s)	61, 142
Hpy166II	GTNNAC	2 cut(s)	35, 250
Hpy188III	TCNNGA	2 cut(s)	41, 142
Hpy8I	GTNNAC	2 cut(s)	35, 250
HpyAV	CCTTC	2 cut(s)	8, 127
HpyCH4V	TGCA	2 cut(s)	8, 98
HpyF3I	CTNAG	1 cut(s)	235
Hsp92II	CATG	1 cut(s)	163
KspAI	GTTAAC	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	82
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	5 cut(s)	43, 81, 120, 214, 258
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	1 cut(s)	113
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	2 cut(s)	24, 220
MnlI	CCTC	3 cut(s)	40, 48, 103
MseI	TTAA	2 cut(s)	126, 249
MspCI	CTTAAG	1 cut(s)	125
MspI	CCGG	4 cut(s)	30, 68, 201, 288
MspR9I	CCNGG	2 cut(s)	69, 288
NciI	CCSGG	2 cut(s)	69, 288
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	1 cut(s)	210
NmeAIII	GCCGAG	1 cut(s)	145
PceI	AGGCCT	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PfoI	TCCNGGA	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	2 cut(s)	35, 209
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	126, 249
Sau3AI	GATC	1 cut(s)	82
Sau96I	GGNCC	2 cut(s)	35, 209
ScrFI	CCNGG	2 cut(s)	69, 288
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	5 cut(s)	40, 51, 126, 132, 141
SfcI	CTRYAG	1 cut(s)	19
SinI	GGWCC	2 cut(s)	35, 209
SmlI	CTYRAG	2 cut(s)	125, 140
SmoI	CTYRAG	2 cut(s)	125, 140
Sse9I	AATT	2 cut(s)	24, 220
SseBI	AGGCCT	1 cut(s)	93
SstI	GAGCTC	1 cut(s)	141
StuI	AGGCCT	1 cut(s)	93
StyD4I	CCNGG	2 cut(s)	67, 286
TaqI	TCGA	2 cut(s)	42, 81
TaqII	GACCGA	1 cut(s)	226
TasI	AATT	2 cut(s)	24, 220
Tru1I	TTAA	2 cut(s)	126, 249
Tru9I	TTAA	2 cut(s)	126, 249
TscAI	CASTG	1 cut(s)	15
TspRI	CASTG	1 cut(s)	15
Vha464I	CTTAAG	1 cut(s)	125
VpaK11BI	GGWCC	2 cut(s)	35, 209
XapI	RAATTY	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.