Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7992426.1

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 521

Gene Structure 521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7992426.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 521 bp

gcaaaactgcagccaagtcgaaaaatgtgtcctctggcagcccttggtatggtgcggaccgtgttaagtacttgggcccattctccggtgaggctccgtcttacctcacaggagagtttcccggggactacggttgggacactgctgggctatcagcggatcccgagacctttgccaaaaaccgtgagcttgaggtcatccattccagatgggccatgcttggggccttgggttgtgttttccctgaactcctagcccgcaatggagtgaagttcggcgaagctgtttggttcaaggccggagcccagatatttagcgagggtgggttagattacttgggaaacccgagcttagtccatgcccaaagcattttggcaatttgggccacacaggtcatcttgatgggtgcggttgaaggctatagaattggcggtgggcctcttggtgaggtggtagacccattgtaccctggtgggagctttgatccattaggacttgctgaagatccagaggcatttgca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

173

Amino Acids

18.3

Weight (kDa)

4.67

Isoelectric Point (pI)

26.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	455
AciI	CCGC	5 cut(s)	55, 157, 258, 409, 431
AclWI	GGATC	4 cut(s)	154, 167, 478, 499
AcuI	CTGAAG	1 cut(s)	521
AfaI	GTAC	2 cut(s)	70, 466
AfiI	CCNNNNNNNGG	3 cut(s)	49, 85, 221
AgsI	TTSAA	2 cut(s)	294, 415
AjnI	CCWGG	1 cut(s)	468
AluBI	AGCT	4 cut(s)	189, 283, 350, 479
AluI	AGCT	4 cut(s)	189, 283, 350, 479
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	4 cut(s)	154, 167, 478, 499
Ama87I	CYCGRG	3 cut(s)	121, 163, 345
AoxI	GGCC	6 cut(s)	75, 212, 224, 296, 383, 436
ApaI	GGGCCC	1 cut(s)	79
ApeKI	GCWGC	2 cut(s)	10, 38
ArsI	GACNNNNNNTTYG	2 cut(s)	13, 45
AspS9I	GGNCC	7 cut(s)	57, 75, 76, 212, 224, 383, 436
AsuC2I	CCSGG	2 cut(s)	122, 123
AsuHPI	GGTGA	2 cut(s)	100, 457
AvaI	CYCGRG	3 cut(s)	121, 163, 345
AvaII	GGWCC	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	79
BamHI	GGATCC	1 cut(s)	159
BanII	GRGCYC	2 cut(s)	79, 306
BbvI	GCAGC	2 cut(s)	22, 50
BccI	CCATC	2 cut(s)	203, 396
BcgI	CGANNNNNNTGC	3 cut(s)	33, 154, 188
BciT130I	CCWGG	1 cut(s)	470
BcnI	CCSGG	2 cut(s)	122, 123
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	253
BfmI	CTRYAG	2 cut(s)	8, 420
BisI	GCNGC	2 cut(s)	11, 39
BlsI	GCNGC	2 cut(s)	12, 40
BmcAI	AGTACT	1 cut(s)	70
Bme1390I	CCNGG	3 cut(s)	122, 123, 470
Bme18I	GGWCC	1 cut(s)	57
BmeT110I	CYCGRG	3 cut(s)	121, 163, 345
BmgT120I	GGNCC	7 cut(s)	57, 75, 76, 212, 224, 383, 436
BmiI	GGNNCC	5 cut(s)	77, 95, 161, 225, 303
BmrFI	CCNGG	3 cut(s)	122, 123, 470
BpuEI	CTTGAG	1 cut(s)	211
BpuMI	CCSGG	2 cut(s)	122, 123
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	5 cut(s)	43, 121, 122, 227, 468
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 85, 221
Bse3DI	GCAATG	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	470
BseDI	CCNNGG	5 cut(s)	43, 121, 122, 227, 468
BseGI	GGATG	1 cut(s)	197
BseLI	CCNNNNNNNGG	3 cut(s)	49, 85, 221
BseMI	GCAATG	1 cut(s)	267
BseSI	GKGCMC	1 cut(s)	79
BseXI	GCAGC	2 cut(s)	22, 50
BseYI	CCCAGC	1 cut(s)	145
BshFI	GGCC	6 cut(s)	77, 214, 226, 298, 385, 438
BsiHKCI	CYCGRG	3 cut(s)	121, 163, 345
BsiSI	CCGG	3 cut(s)	86, 122, 299
BslFI	GGGAC	2 cut(s)	139, 151
BslI	CCNNNNNNNGG	3 cut(s)	49, 85, 221
BsmAI	GTCTC	1 cut(s)	160
BsmFI	GGGAC	2 cut(s)	139, 151
BsnI	GGCC	6 cut(s)	77, 214, 226, 298, 385, 438
Bso31I	GGTCTC	1 cut(s)	160
BsoBI	CYCGRG	3 cut(s)	121, 163, 345
Bsp120I	GGGCCC	1 cut(s)	75
Bsp1286I	GDGCHC	2 cut(s)	79, 306
Bsp143I	GATC	3 cut(s)	159, 483, 504
BspACI	CCGC	5 cut(s)	55, 157, 258, 409, 431
BspANI	GGCC	6 cut(s)	77, 214, 226, 298, 385, 438
BspLI	GGNNCC	5 cut(s)	77, 95, 161, 225, 303
BspMAI	CTGCAG	1 cut(s)	12
BspPI	GGATC	4 cut(s)	154, 167, 478, 499
BspTNI	GGTCTC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	267
BssECI	CCNNGG	5 cut(s)	43, 121, 122, 227, 468
BssMI	GATC	3 cut(s)	159, 483, 504
BssT1I	CCWWGG	2 cut(s)	43, 227
Bst2UI	CCWGG	1 cut(s)	470
Bst4CI	ACNGT	3 cut(s)	61, 133, 184
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	351
BstF5I	GGATG	1 cut(s)	197
BstKTI	GATC	3 cut(s)	162, 486, 507
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	3 cut(s)	159, 483, 504
BstMWI	GCNNNNNNNGC	1 cut(s)	382
BstNI	CCWGG	1 cut(s)	470
BstSCI	CCNGG	3 cut(s)	120, 121, 468
BstSFI	CTRYAG	2 cut(s)	8, 420
BstSLI	GKGCMC	1 cut(s)	79
BstV1I	GCAGC	2 cut(s)	22, 50
BstX2I	RGATCY	2 cut(s)	159, 504
BstYI	RGATCY	2 cut(s)	159, 504
BsuRI	GGCC	6 cut(s)	77, 214, 226, 298, 385, 438
BtsCI	GGATG	1 cut(s)	197
BtsI	GCAGTG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	258
Cfr13I	GGNCC	7 cut(s)	57, 75, 76, 212, 224, 383, 436
Cfr9I	CCCGGG	1 cut(s)	121
CpoI	CGGWCCG	1 cut(s)	57
Csp6I	GTAC	2 cut(s)	69, 465
CspI	CGGWCCG	1 cut(s)	57
CviAII	CATG	2 cut(s)	216, 358
CviQI	GTAC	2 cut(s)	69, 465
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	3 cut(s)	161, 485, 506
DpnII	GATC	3 cut(s)	159, 483, 504
Eco130I	CCWWGG	2 cut(s)	43, 227
Eco24I	GRGCYC	2 cut(s)	79, 306
Eco31I	GGTCTC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	521
Eco88I	CYCGRG	3 cut(s)	121, 163, 345
EcoO109I	RGGNCCY	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	468
EcoT14I	CCWWGG	2 cut(s)	43, 227
EcoT38I	GRGCYC	2 cut(s)	79, 306
ErhI	CCWWGG	2 cut(s)	43, 227
FaeI	CATG	2 cut(s)	219, 361
FaiI	YATR	4 cut(s)	50, 217, 359, 422
FaqI	GGGAC	2 cut(s)	139, 151
FatI	CATG	2 cut(s)	215, 357
FauI	CCCGC	1 cut(s)	265
FblI	GTMKAC	1 cut(s)	455
Fnu4HI	GCNGC	2 cut(s)	11, 39
FokI	GGATG	1 cut(s)	184
FriOI	GRGCYC	2 cut(s)	79, 306
Fsp4HI	GCNGC	2 cut(s)	11, 39
FspBI	CTAG	1 cut(s)	253
GluI	GCNGC	2 cut(s)	11, 39
GsaI	CCCAGC	1 cut(s)	149
HaeIII	GGCC	6 cut(s)	77, 214, 226, 298, 385, 438
HapII	CCGG	3 cut(s)	86, 122, 299
Hin1II	CATG	2 cut(s)	219, 361
HpaII	CCGG	3 cut(s)	86, 122, 299
HphI	GGTGA	2 cut(s)	100, 457
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188III	TCNNGA	4 cut(s)	163, 206, 399, 508
Hpy8I	GTNNAC	1 cut(s)	456
HpyAV	CCTTC	1 cut(s)	409
HpyCH4III	ACNGT	3 cut(s)	61, 133, 184
HpyCH4V	TGCA	2 cut(s)	10, 520
HpyF10VI	GCNNNNNNNGC	1 cut(s)	382
HpyF3I	CTNAG	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	219, 361
Kzo9I	GATC	3 cut(s)	159, 483, 504
LmnI	GCTCC	3 cut(s)	99, 301, 476
Lsp1109I	GCAGC	2 cut(s)	22, 50
MaeI	CTAG	1 cut(s)	253
MalI	GATC	3 cut(s)	161, 485, 506
MboI	GATC	3 cut(s)	159, 483, 504
MboII	GAAGA	1 cut(s)	514
MflI	RGATCY	2 cut(s)	159, 504
MhlI	GDGCHC	2 cut(s)	79, 306
MluCI	AATT	2 cut(s)	377, 425
MnlI	CCTC	8 cut(s)	42, 84, 115, 186, 312, 441, 449, 504
MseI	TTAA	1 cut(s)	65
MslI	CAYNNNNRTG	1 cut(s)	400
MspA1I	CMGCKG	1 cut(s)	157
MspI	CCGG	3 cut(s)	86, 122, 299
MspR9I	CCNGG	3 cut(s)	122, 123, 470
MvaI	CCWGG	1 cut(s)	470
MwoI	GCNNNNNNNGC	1 cut(s)	382
NciI	CCSGG	2 cut(s)	122, 123
NdeII	GATC	3 cut(s)	159, 483, 504
NlaIII	CATG	2 cut(s)	219, 361
NlaIV	GGNNCC	5 cut(s)	77, 95, 161, 225, 303
PkrI	GCNGC	2 cut(s)	12, 40
Psp6I	CCWGG	1 cut(s)	468
PspFI	CCCAGC	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	468
PspN4I	GGNNCC	5 cut(s)	77, 95, 161, 225, 303
PspOMI	GGGCCC	1 cut(s)	75
PspPI	GGNCC	7 cut(s)	57, 75, 76, 212, 224, 383, 436
PstI	CTGCAG	1 cut(s)	12
PsuI	RGATCY	2 cut(s)	159, 504
RsaI	GTAC	2 cut(s)	70, 466
RsaNI	GTAC	2 cut(s)	69, 465
RseI	CAYNNNNRTG	1 cut(s)	400
Rsr2I	CGGWCCG	1 cut(s)	57
RsrII	CGGWCCG	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	2 cut(s)	11, 39
Sau3AI	GATC	3 cut(s)	159, 483, 504
Sau96I	GGNCC	7 cut(s)	57, 75, 76, 212, 224, 383, 436
ScaI	AGTACT	1 cut(s)	70
ScrFI	CCNGG	3 cut(s)	122, 123, 470
SduI	GDGCHC	2 cut(s)	79, 306
SetI	ASST	9 cut(s)	107, 172, 191, 197, 285, 352, 395, 452, 481
SfcI	CTRYAG	2 cut(s)	8, 420
SinI	GGWCC	1 cut(s)	57
SmaI	CCCGGG	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	400
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	2 cut(s)	377, 425
SsiI	CCGC	5 cut(s)	55, 157, 258, 409, 431
SspMI	CTAG	1 cut(s)	253
StyD4I	CCNGG	3 cut(s)	120, 121, 468
StyI	CCWWGG	2 cut(s)	43, 227
TaaI	ACNGT	3 cut(s)	61, 133, 184
TaqI	TCGA	1 cut(s)	19
TasI	AATT	2 cut(s)	377, 425
TatI	WGTACW	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	2 cut(s)	10, 38
TspGWI	ACGGA	1 cut(s)	86
TspMI	CCCGGG	1 cut(s)	121
TspRI	CASTG	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	57
XmaI	CCCGGG	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	455
XspI	CTAG	1 cut(s)	253
ZrmI	AGTACT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.