Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000275

Physical Location & Seq

Genomic Coordinates Reverse (-)

73886817 .. 73887454

Gene Structure 638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34352

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTCATCTGGCAGCCTATGGTACAGTGTAGACCGTGTTATGTACTTGGGCCCATTCTCTGATGAGGCCCCATCTTACTTCATTGGGGAGTTTCCTGGAGATTACGGTTGGGACACCGCTGGGCTATCAGCGGATCCCGAGATCTTTGCCAAAAACCGTGAGCTTGAGGTCATCCATTCCATATGGGCCATACTTGGGGCCTTGGGCTGTGTTTTCCCTGAACTCCTACCCTGCAATGGAGTCAAGTTCGGGGAGGCTGTTTGGTTCAAGGACGGAGCCCAGATATTTAGCGAGGGTGGAGGTTTAGGTGAAGGAGCTAAAGAATGGGCCATGTTTTCTAAGTTCGGATTTTTCGTGCAAGCCATTGTCACCGGAAAGGGACCAATCGAAAACCTTGCCGATCACTTGGCTGACCCTGTTAACAACAATGCTCGGTCATATGCCACCAACTTTGTTCCCGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

155

Amino Acids

16.8

Weight (kDa)

4.53

Isoelectric Point (pI)

24.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	24 - 120	2.1e-16	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05070 AT2G05100 AT2G05100 AT3G27690 AT3G27690
fragaria_vesca	FvH4_3g37660 FvH4_6g32440 FvH4_6g38383 FvH4_6g38390 FvH4_6g38450 FvH4_6g38460 FvH4_6g40970 FvH4_6g41000
malus_domestica	MD09G1122500.v1.1 MD09G1292900.v1.1 MD17G1109600.v1.1 MD17G1113400.v1.1 MD17G1137800.v1.1 MD17G1281900.v1.1
prunus_persica	Prupe.3G004100_v2.0.a1 Prupe.3G174600_v2.0.a1 Prupe.3G174700_v2.0.a1 Prupe.3G201000_v2.0.a1 Prupe.3G201000_v2.0.a1
pyrus_communis	pycom09g04690
rosa_chinensis	RchiOBHm_Chr2g0138781 RchiOBHm_Chr2g0140601 RchiOBHm_Chr2g0140621 RchiOBHm_Chr2g0140661 RchiOBHm_Chr2g0140671 RchiOBHm_Chr2g0151701 RchiOBHm_Chr2g0156601 RchiOBHm_Chr2g0156611 RchiOBHm_Chr2g0156621 RchiOBHm_Chr3g0486251 RchiOBHm_Chr5g0067271 RchiOBHm_Chr5g0067731 RchiOBHm_Chr5g0067781 RchiOBHm_Chr5g0067851 RchiOBHm_Chr5g0067871 RchiOBHm_Chr5g0067881
rosa_laevigata	RLG00000019760 RLG00000019883 RLG00000019890 RLG00000020570 RLG00000020571 RLG00000020572 RLG00000020573 RLG00000020923 RLG00000020924 RLG00000020925 RLG00000023090 RLG00000035922 RLG00000035943
rosa_multiflora	Rmu_co7992426.1_g000001 Rmu_co8294383.1_g000001 Rmu_sc0000015.1_g000011 Rmu_sc0000435.1_g000050 Rmu_sc0000435.1_g000051 Rmu_sc0001857.1_g000019 Rmu_sc0003342.1_g000007 Rmu_sc0005294.1_g000040 Rmu_sc0005294.1_g000041 Rmu_sc0007131.1_g000005 Rmu_sc0007661.1_g000008 Rmu_sc0009883.1_g000012 Rmu_sc0011512.1_g000011 Rmu_sc0011512.1_g000012 Rmu_sc0011512.1_g000013 Rmu_sc0012576.1_g000001 Rmu_sc0014881.1_g000003 Rmu_sc0014881.1_g000004 Rmu_sc0014881.1_g000005 Rmu_ssc0000213.1_g000119
rosa_roxburghii	Rroxscaffold_1G00013870 Rroxscaffold_2G00092910 Rroxscaffold_2G00092920 Rroxscaffold_2G00096220 Rroxscaffold_2G00096230 Rroxscaffold_2G00105960 Rroxscaffold_6G00395950
rosa_rugosa	Rorug02G0428200 Rorug02G0428300 Rorug02G0454600 Rorug02G0454700 Rorug03G0224200 Rorug05G0383400 Rorug05G0385900
rosa_samantha	Rh2AG402400 Rh2AG415500 Rh2AG489100 Rh2AG489200 Rh2AG489300 Rh2AG489400 Rh2AG520200 Rh2AG520300 Rh2AG520500 Rh2BG405200 Rh2BG501700 Rh2BG501800 Rh2BG533300 Rh2BG533500 Rh2BG533600 Rh2DG422600 Rh2DG434900 Rh2DG435000 Rh2DG435100 Rh2DG512800 Rh2DG512900 Rh2DG542100 Rh2DG542300 Rh2DG542400 Rh3AG274200 Rh3BG309500 Rh3CG308700 Rh5AG442900 Rh5AG444700 Rh5BG460100 Rh5DG475000 Rh5DG476700
rosa_wichuraiana	Rw0G022540 Rw2G032710 Rw2G034000 Rw2G040110 Rw2G042910 Rw2G042920 Rw2G042930 Rw3G024310 Rw5G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	30
AciI	CCGC	2 cut(s)	117, 131
AclWI	GGATC	2 cut(s)	128, 141
AfaI	GTAC	2 cut(s)	23, 44
AfiI	CCNNNNNNNGG	2 cut(s)	195, 236
AgsI	TTSAA	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	2 cut(s)	163, 317
AluI	AGCT	2 cut(s)	163, 317
AlwI	GGATC	2 cut(s)	128, 141
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	5 cut(s)	49, 66, 186, 198, 327
ApaI	GGGCCC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	12
AspS9I	GGNCC	7 cut(s)	49, 50, 67, 186, 198, 327, 380
AsuC2I	CCSGG	1 cut(s)	459
AsuHPI	GGTGA	2 cut(s)	320, 361
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	380
BaeGI	GKGCMC	1 cut(s)	53
BamHI	GGATCC	1 cut(s)	133
BanII	GRGCYC	2 cut(s)	53, 280
BbvI	GCAGC	1 cut(s)	24
BccI	CCATC	1 cut(s)	79
BcgI	CGANNNNNNTGC	4 cut(s)	128, 162, 377, 411
BciT130I	CCWGG	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	459
BglII	AGATCT	1 cut(s)	141
BisI	GCNGC	1 cut(s)	13
BlsI	GCNGC	1 cut(s)	14
Bme1390I	CCNGG	2 cut(s)	96, 459
Bme18I	GGWCC	1 cut(s)	380
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	7 cut(s)	49, 50, 67, 186, 198, 327, 380
BmiI	GGNNCC	6 cut(s)	51, 69, 135, 199, 277, 381
BmrFI	CCNGG	2 cut(s)	96, 459
BpmI	CTGGAG	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	459
BsaJI	CCNNGG	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 236
Bse3DI	GCAATG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	195, 236
BseMI	GCAATG	1 cut(s)	241
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	24
BseYI	CCCAGC	1 cut(s)	119
BshFI	GGCC	5 cut(s)	51, 68, 188, 200, 329
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	2 cut(s)	372, 459
BslFI	GGGAC	2 cut(s)	125, 393
BslI	CCNNNNNNNGG	2 cut(s)	195, 236
BsmFI	GGGAC	2 cut(s)	125, 393
BsnI	GGCC	5 cut(s)	51, 68, 188, 200, 329
BsoBI	CYCGRG	1 cut(s)	137
Bsp120I	GGGCCC	1 cut(s)	49
Bsp1286I	GDGCHC	2 cut(s)	53, 280
Bsp143I	GATC	3 cut(s)	133, 141, 400
BspACI	CCGC	2 cut(s)	117, 131
BspANI	GGCC	5 cut(s)	51, 68, 188, 200, 329
BspLI	GGNNCC	6 cut(s)	51, 69, 135, 199, 277, 381
BspPI	GGATC	2 cut(s)	128, 141
BsrDI	GCAATG	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	3 cut(s)	133, 141, 400
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	4 cut(s)	26, 35, 107, 158
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	171
BstKTI	GATC	3 cut(s)	136, 144, 403
BstMBI	GATC	3 cut(s)	133, 141, 400
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	2 cut(s)	94, 457
BstSLI	GKGCMC	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	24
BstX2I	RGATCY	2 cut(s)	133, 141
BstYI	RGATCY	2 cut(s)	133, 141
BsuRI	GGCC	5 cut(s)	51, 68, 188, 200, 329
BtsCI	GGATG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	360
Cfr13I	GGNCC	7 cut(s)	49, 50, 67, 186, 198, 327, 380
Csp6I	GTAC	2 cut(s)	22, 43
CspCI	CAANNNNNGTGG	2 cut(s)	433, 468
CviAII	CATG	1 cut(s)	331
CviQI	GTAC	2 cut(s)	22, 43
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	3 cut(s)	135, 143, 402
DpnII	GATC	3 cut(s)	133, 141, 400
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	2 cut(s)	53, 280
Eco47I	GGWCC	1 cut(s)	380
Eco88I	CYCGRG	1 cut(s)	137
EcoO109I	RGGNCCY	2 cut(s)	67, 198
EcoRII	CCWGG	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	2 cut(s)	53, 280
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	1 cut(s)	334
FaiI	YATR	8 cut(s)	19, 41, 182, 184, 191, 332, 439, 441
FaqI	GGGAC	2 cut(s)	125, 393
FatI	CATG	1 cut(s)	330
FauNDI	CATATG	2 cut(s)	182, 439
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	1 cut(s)	13
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	2 cut(s)	53, 280
Fsp4HI	GCNGC	1 cut(s)	13
GluI	GCNGC	1 cut(s)	13
GsaI	CCCAGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	5 cut(s)	51, 68, 188, 200, 329
HapII	CCGG	2 cut(s)	372, 459
Hin1II	CATG	1 cut(s)	334
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	1 cut(s)	240
HpaI	GTTAAC	1 cut(s)	421
HpaII	CCGG	2 cut(s)	372, 459
HphI	GGTGA	2 cut(s)	320, 361
Hpy166II	GTNNAC	2 cut(s)	31, 421
Hpy188I	TCNGA	2 cut(s)	61, 347
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	2 cut(s)	31, 421
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	4 cut(s)	26, 35, 107, 158
HpyCH4V	TGCA	2 cut(s)	234, 358
HpyF3I	CTNAG	1 cut(s)	339
Hsp92II	CATG	1 cut(s)	334
KspAI	GTTAAC	1 cut(s)	421
Kzo9I	GATC	3 cut(s)	133, 141, 400
LmnI	GCTCC	2 cut(s)	275, 314
LpnPI	CCDG	8 cut(s)	81, 105, 108, 231, 244, 293, 385, 429
Lsp1109I	GCAGC	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	3 cut(s)	135, 143, 402
MboI	GATC	3 cut(s)	133, 141, 400
MflI	RGATCY	2 cut(s)	133, 141
MhlI	GDGCHC	2 cut(s)	53, 280
MlyI	GAGTC	1 cut(s)	249
MnlI	CCTC	5 cut(s)	58, 160, 247, 286, 293
MseI	TTAA	1 cut(s)	420
MspA1I	CMGCKG	2 cut(s)	119, 131
MspI	CCGG	2 cut(s)	372, 459
MspR9I	CCNGG	2 cut(s)	96, 459
MvaI	CCWGG	1 cut(s)	96
NciI	CCSGG	1 cut(s)	459
NdeI	CATATG	2 cut(s)	182, 439
NdeII	GATC	3 cut(s)	133, 141, 400
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	6 cut(s)	51, 69, 135, 199, 277, 381
NmuCI	GTSAC	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PfoI	TCCNGGA	2 cut(s)	94, 457
PkrI	GCNGC	1 cut(s)	14
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	6 cut(s)	51, 69, 135, 199, 277, 381
PspOMI	GGGCCC	1 cut(s)	49
PspPI	GGNCC	7 cut(s)	49, 50, 67, 186, 198, 327, 380
PsuI	RGATCY	2 cut(s)	133, 141
RsaI	GTAC	2 cut(s)	23, 44
RsaNI	GTAC	2 cut(s)	22, 43
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	1 cut(s)	13
Sau3AI	GATC	3 cut(s)	133, 141, 400
Sau96I	GGNCC	7 cut(s)	49, 50, 67, 186, 198, 327, 380
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	2 cut(s)	96, 459
SduI	GDGCHC	2 cut(s)	53, 280
SetI	ASST	6 cut(s)	165, 171, 304, 310, 319, 396
SinI	GGWCC	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SsiI	CCGC	2 cut(s)	117, 131
StyD4I	CCNGG	2 cut(s)	94, 457
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	4 cut(s)	26, 35, 107, 158
TaqI	TCGA	1 cut(s)	387
TaqII	GACCGA	1 cut(s)	423
TatI	WGTACW	1 cut(s)	42
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	1 cut(s)	12
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	1 cut(s)	70
TspGWI	ACGGA	1 cut(s)	288
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.